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PubMed:21508921 JSONTXT

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Allie

Id Subject Object Predicate Lexical cue
SS1_21508921_11_0 1124-1160 expanded denotes National Malaria Surveillance System
SS2_21508921_11_0 1162-1166 abbr denotes NMSS
SS1_21508921_11_1 1169-1217 expanded denotes National Notifiable Diseases Surveillance System
SS2_21508921_11_1 1219-1224 abbr denotes NNDSS
SS1_21508921_23_0 2555-2585 expanded denotes visiting friends and relatives
SS2_21508921_23_0 2587-2590 abbr denotes VFR
AE1_21508921_11_0 SS1_21508921_11_0 SS2_21508921_11_0 abbreviatedTo National Malaria Surveillance System,NMSS
AE1_21508921_11_1 SS1_21508921_11_1 SS2_21508921_11_1 abbreviatedTo National Notifiable Diseases Surveillance System,NNDSS
AE1_21508921_23_0 SS1_21508921_23_0 SS2_21508921_23_0 abbreviatedTo visiting friends and relatives,VFR

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-42 Sentence denotes Malaria surveillance--United States, 2009.
TextSentencer_T2 43-61 Sentence denotes PROBLEM/CONDITION:
TextSentencer_T3 62-144 Sentence denotes Malaria in humans is caused by intraerythrocytic protozoa of the genus Plasmodium.
TextSentencer_T4 145-231 Sentence denotes These parasites are transmitted by the bite of an infective female Anopheles mosquito.
TextSentencer_T5 232-369 Sentence denotes The majority of malaria infections in the United States occur among persons who have traveled to areas with ongoing malaria transmission.
TextSentencer_T6 370-514 Sentence denotes In the United States, cases can occur through exposure to infected blood products, congenital transmission, or local mosquitoborne transmission.
TextSentencer_T7 515-646 Sentence denotes Malaria surveillance is conducted to identify episodes of local transmission and to guide prevention recommendations for travelers.
TextSentencer_T8 647-662 Sentence denotes PERIOD COVERED:
TextSentencer_T9 663-777 Sentence denotes This report summarizes cases in persons with onset of illness in 2009 and summarizes trends during previous years.
TextSentencer_T10 778-800 Sentence denotes DESCRIPTION OF SYSTEM:
TextSentencer_T11 801-1003 Sentence denotes Malaria cases diagnosed by blood film, polymerase chain reaction or rapid diagnostic tests are mandated to be reported to local and state health departments by health-care providers or laboratory staff.
TextSentencer_T12 1004-1250 Sentence denotes Case investigations are conducted by local and state health departments, and reports are transmitted to CDC through the National Malaria Surveillance System (NMSS), National Notifiable Diseases Surveillance System (NNDSS), or direct CDC consults.
TextSentencer_T13 1251-1320 Sentence denotes Data from these reporting systems serve as the basis for this report.
TextSentencer_T14 1321-1563 Sentence denotes RESULTS: CDC received reports of 1,484 cases of malaria, including two transfusion-related cases, three possible congenital cases, one transplant case and four fatal cases, with an onset of symptoms in 2009 among persons in the United States.
TextSentencer_T15 1564-1645 Sentence denotes This number represents an increase of 14% from the 1,298 cases reported for 2008.
TextSentencer_T16 1646-1768 Sentence denotes Plasmodium falciparum, P. vivax, P. malariae, and P. ovale were identified in 46%, 11%, 2%, and 2% of cases, respectively.
TextSentencer_T17 1769-1824 Sentence denotes Thirteen patients were infected by two or more species.
TextSentencer_T18 1825-1894 Sentence denotes The infecting species was unreported or undetermined in 38% of cases.
TextSentencer_T19 1895-1951 Sentence denotes Among the 1,484 cases 1,478 were classified as imported.
TextSentencer_T20 1952-2206 Sentence denotes Among the 103 U.S. civilians for whom information on chemoprophylaxis use and travel area was known, only 34 (33%) reported that they had followed and adhered to a chemoprophylactic drug regimen recommended by CDC for the area to which they had traveled.
TextSentencer_T21 2207-2299 Sentence denotes Nineteen cases were reported in pregnant women, among whom none adhered to chemoprophylaxis.
TextSentencer_T22 2300-2510 Sentence denotes Almost 22% of the cases among pregnant women were treated with an inappropriate treatment drug regimen, of which 39% were among cases with either a P. vivax or P. ovale infection where primaquine was not taken.
TextSentencer_T23 2511-2676 Sentence denotes Among all the reasons for travel, travelers visiting friends and relatives (VFR) and missionaries were the groups with the lowest proportion of chemoprophylexis use.
TextSentencer_T24 2677-2692 Sentence denotes INTERPRETATION:
TextSentencer_T25 2693-2897 Sentence denotes A notable increase in the number of malaria cases was reported from 2008 to 2009; however, the number of cases in 2009 is consistent with the average number of cases reported during the preceding 4 years.
TextSentencer_T26 2898-3092 Sentence denotes In the majority of reported cases, U.S. civilians who acquired infection abroad had not adhered to a chemoprophylaxis regimen that was appropriate for the country in which they acquired malaria.
TextSentencer_T27 3093-3293 Sentence denotes Furthermore, treatment of malaria, while appropriate for the majority of cases, was insufficient for a large number of P. vivax and P. ovale infections, putting patients at risk for relapsing malaria.
TextSentencer_T28 3294-3316 Sentence denotes PUBLIC HEALTH ACTIONS:
TextSentencer_T29 3317-3575 Sentence denotes Decreasing the number of malaria cases in subsequent years will require conveying the importance of adhering to appropriate preventive measures for malaria specifically targeting travelers visiting friends and relatives, missionary, and pregnant populations.
TextSentencer_T30 3576-3753 Sentence denotes Clinicians require education on the need to encourage use of malaria prophylaxis and need further information on the appropriate diagnostic and treatment guidelines for malaria.
TextSentencer_T31 3754-3924 Sentence denotes Malaria prevention recommendations are available online (http://www.cdc.gov/malaria/travelers/ or http://wwwnc.cdc.gov/travel/yellowbook/2010/chapter-2/malaria.aspx#990).
TextSentencer_T32 3925-4181 Sentence denotes Malaria infections can be fatal if not diagnosed and treated promptly with antimalarial medications appropriate for the individual patient's age and medical history, the likely site of malaria acquisition, and previous use of antimalarial chemoprophylaxis.
TextSentencer_T33 4182-4322 Sentence denotes Clinicians should consult the CDC Guidelines for Treatment and contact the CDC's Malaria Hotline for case management advisement when needed.
TextSentencer_T34 4323-4478 Sentence denotes Malaria treatment recommendations can be obtained online (http://www.cdc.gov/malaria/diagnosis_treatment) or by calling the Malaria Hotline (770-488-7788).
T1 0-42 Sentence denotes Malaria surveillance--United States, 2009.
T2 43-61 Sentence denotes PROBLEM/CONDITION:
T3 62-144 Sentence denotes Malaria in humans is caused by intraerythrocytic protozoa of the genus Plasmodium.
T4 145-231 Sentence denotes These parasites are transmitted by the bite of an infective female Anopheles mosquito.
T5 232-369 Sentence denotes The majority of malaria infections in the United States occur among persons who have traveled to areas with ongoing malaria transmission.
T6 370-514 Sentence denotes In the United States, cases can occur through exposure to infected blood products, congenital transmission, or local mosquitoborne transmission.
T7 515-646 Sentence denotes Malaria surveillance is conducted to identify episodes of local transmission and to guide prevention recommendations for travelers.
T8 647-662 Sentence denotes PERIOD COVERED:
T9 663-777 Sentence denotes This report summarizes cases in persons with onset of illness in 2009 and summarizes trends during previous years.
T10 778-800 Sentence denotes DESCRIPTION OF SYSTEM:
T11 801-1003 Sentence denotes Malaria cases diagnosed by blood film, polymerase chain reaction or rapid diagnostic tests are mandated to be reported to local and state health departments by health-care providers or laboratory staff.
T12 1004-1250 Sentence denotes Case investigations are conducted by local and state health departments, and reports are transmitted to CDC through the National Malaria Surveillance System (NMSS), National Notifiable Diseases Surveillance System (NNDSS), or direct CDC consults.
T13 1251-1320 Sentence denotes Data from these reporting systems serve as the basis for this report.
T14 1321-1563 Sentence denotes RESULTS: CDC received reports of 1,484 cases of malaria, including two transfusion-related cases, three possible congenital cases, one transplant case and four fatal cases, with an onset of symptoms in 2009 among persons in the United States.
T15 1564-1645 Sentence denotes This number represents an increase of 14% from the 1,298 cases reported for 2008.
T16 1646-1768 Sentence denotes Plasmodium falciparum, P. vivax, P. malariae, and P. ovale were identified in 46%, 11%, 2%, and 2% of cases, respectively.
T17 1769-1824 Sentence denotes Thirteen patients were infected by two or more species.
T18 1825-1894 Sentence denotes The infecting species was unreported or undetermined in 38% of cases.
T19 1895-1951 Sentence denotes Among the 1,484 cases 1,478 were classified as imported.
T20 1952-2206 Sentence denotes Among the 103 U.S. civilians for whom information on chemoprophylaxis use and travel area was known, only 34 (33%) reported that they had followed and adhered to a chemoprophylactic drug regimen recommended by CDC for the area to which they had traveled.
T21 2207-2299 Sentence denotes Nineteen cases were reported in pregnant women, among whom none adhered to chemoprophylaxis.
T22 2300-2510 Sentence denotes Almost 22% of the cases among pregnant women were treated with an inappropriate treatment drug regimen, of which 39% were among cases with either a P. vivax or P. ovale infection where primaquine was not taken.
T23 2511-2676 Sentence denotes Among all the reasons for travel, travelers visiting friends and relatives (VFR) and missionaries were the groups with the lowest proportion of chemoprophylexis use.
T24 2677-2692 Sentence denotes INTERPRETATION:
T25 2693-2897 Sentence denotes A notable increase in the number of malaria cases was reported from 2008 to 2009; however, the number of cases in 2009 is consistent with the average number of cases reported during the preceding 4 years.
T26 2898-3092 Sentence denotes In the majority of reported cases, U.S. civilians who acquired infection abroad had not adhered to a chemoprophylaxis regimen that was appropriate for the country in which they acquired malaria.
T27 3093-3293 Sentence denotes Furthermore, treatment of malaria, while appropriate for the majority of cases, was insufficient for a large number of P. vivax and P. ovale infections, putting patients at risk for relapsing malaria.
T28 3294-3316 Sentence denotes PUBLIC HEALTH ACTIONS:
T29 3317-3575 Sentence denotes Decreasing the number of malaria cases in subsequent years will require conveying the importance of adhering to appropriate preventive measures for malaria specifically targeting travelers visiting friends and relatives, missionary, and pregnant populations.
T30 3576-3753 Sentence denotes Clinicians require education on the need to encourage use of malaria prophylaxis and need further information on the appropriate diagnostic and treatment guidelines for malaria.
T31 3754-3924 Sentence denotes Malaria prevention recommendations are available online (http://www.cdc.gov/malaria/travelers/ or http://wwwnc.cdc.gov/travel/yellowbook/2010/chapter-2/malaria.aspx#990).
T32 3925-4181 Sentence denotes Malaria infections can be fatal if not diagnosed and treated promptly with antimalarial medications appropriate for the individual patient's age and medical history, the likely site of malaria acquisition, and previous use of antimalarial chemoprophylaxis.
T33 4182-4322 Sentence denotes Clinicians should consult the CDC Guidelines for Treatment and contact the CDC's Malaria Hotline for case management advisement when needed.
T34 4323-4478 Sentence denotes Malaria treatment recommendations can be obtained online (http://www.cdc.gov/malaria/diagnosis_treatment) or by calling the Malaria Hotline (770-488-7788).

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 437-442 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 828-833 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

PubCasesORDO

Id Subject Object Predicate Lexical cue
TI1 0-7 ORDO:673 denotes Malaria
AB1 248-255 ORDO:673 denotes malaria
AB2 348-355 ORDO:673 denotes malaria
AB3 515-522 ORDO:673 denotes Malaria
AB4 798-808 ORDO:673 denotes M: Malaria
AB5 1133-1140 ORDO:673 denotes Malaria
AB6 1369-1376 ORDO:673 denotes malaria
AB7 1682-1690 ORDO:673 denotes malariae
AB8 2729-2736 ORDO:673 denotes malaria
AB9 3084-3091 ORDO:673 denotes malaria
AB10 3119-3126 ORDO:673 denotes malaria
AB11 3285-3292 ORDO:673 denotes malaria
AB12 3342-3349 ORDO:673 denotes malaria
AB13 3465-3472 ORDO:673 denotes malaria
AB14 3637-3644 ORDO:673 denotes malaria
AB15 3745-3752 ORDO:673 denotes malaria
AB16 3754-3761 ORDO:673 denotes Malaria
AB17 3830-3837 ORDO:673 denotes malaria
AB18 3906-3913 ORDO:673 denotes malaria
AB19 3925-3932 ORDO:673 denotes Malaria
AB20 4110-4117 ORDO:673 denotes malaria
AB21 4263-4270 ORDO:673 denotes Malaria
AB22 4323-4330 ORDO:673 denotes Malaria
AB23 4400-4407 ORDO:673 denotes malaria
AB24 4447-4454 ORDO:673 denotes Malaria

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 437-442 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 828-833 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood