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OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 177-178 http://identifiers.org/oryzabase.gene/11216 denotes 1
T2 1283-1294 http://identifiers.org/oryzabase.gene/8905 denotes pullulanase
T3 1436-1447 http://identifiers.org/oryzabase.gene/8905 denotes pullulanase

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-124 Sentence denotes Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
TextSentencer_T2 125-280 Sentence denotes Starch-branching enzyme catalyzes the cleavage of α-1, 4-linkages and the subsequent transfer of α-1,4 glucan to form an α-1,6 branch point in amylopectin.
TextSentencer_T3 281-504 Sentence denotes Sequence analysis of the rice-branching enzyme I (BEI) indicated a modular structure in which the central α-amylase domain is flanked on each side by the N-terminal carbohydrate-binding module 48 and the α-amylase C-domain.
TextSentencer_T4 505-655 Sentence denotes We determined the crystal structure of BEI at a resolution of 1.9 Å by molecular replacement using the Escherichia coli glycogen BE as a search model.
TextSentencer_T5 656-841 Sentence denotes Despite three modular structures, BEI is roughly ellipsoidal in shape with two globular domains that form a prominent groove which is proposed to serve as the α-polyglucan-binding site.
TextSentencer_T6 842-1042 Sentence denotes Amino acid residues Asp344 and Glu399, which are postulated to play an essential role in catalysis as a nucleophile and a general acid/base, respectively, are located at a central cleft in the groove.
TextSentencer_T7 1043-1295 Sentence denotes Moreover, structural comparison revealed that in BEI, extended loop structures cause a narrowing of the substrate-binding site, whereas shortened loop structures make a larger space at the corresponding subsite in the Klebsiella pneumoniae pullulanase.
TextSentencer_T8 1296-1448 Sentence denotes This structural difference might be attributed to distinct catalytic reactions, transglycosylation and hydrolysis, respectively, by BEI and pullulanase.
T1 0-124 Sentence denotes Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
T2 125-280 Sentence denotes Starch-branching enzyme catalyzes the cleavage of α-1, 4-linkages and the subsequent transfer of α-1,4 glucan to form an α-1,6 branch point in amylopectin.
T3 281-504 Sentence denotes Sequence analysis of the rice-branching enzyme I (BEI) indicated a modular structure in which the central α-amylase domain is flanked on each side by the N-terminal carbohydrate-binding module 48 and the α-amylase C-domain.
T4 505-655 Sentence denotes We determined the crystal structure of BEI at a resolution of 1.9 Å by molecular replacement using the Escherichia coli glycogen BE as a search model.
T5 656-841 Sentence denotes Despite three modular structures, BEI is roughly ellipsoidal in shape with two globular domains that form a prominent groove which is proposed to serve as the α-polyglucan-binding site.
T6 842-1042 Sentence denotes Amino acid residues Asp344 and Glu399, which are postulated to play an essential role in catalysis as a nucleophile and a general acid/base, respectively, are located at a central cleft in the groove.
T7 1043-1295 Sentence denotes Moreover, structural comparison revealed that in BEI, extended loop structures cause a narrowing of the substrate-binding site, whereas shortened loop structures make a larger space at the corresponding subsite in the Klebsiella pneumoniae pullulanase.
T8 1296-1448 Sentence denotes This structural difference might be attributed to distinct catalytic reactions, transglycosylation and hydrolysis, respectively, by BEI and pullulanase.
T1 0-124 Sentence denotes Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
T2 125-280 Sentence denotes Starch-branching enzyme catalyzes the cleavage of α-1, 4-linkages and the subsequent transfer of α-1,4 glucan to form an α-1,6 branch point in amylopectin.
T3 281-504 Sentence denotes Sequence analysis of the rice-branching enzyme I (BEI) indicated a modular structure in which the central α-amylase domain is flanked on each side by the N-terminal carbohydrate-binding module 48 and the α-amylase C-domain.
T4 505-655 Sentence denotes We determined the crystal structure of BEI at a resolution of 1.9 Å by molecular replacement using the Escherichia coli glycogen BE as a search model.
T5 656-841 Sentence denotes Despite three modular structures, BEI is roughly ellipsoidal in shape with two globular domains that form a prominent groove which is proposed to serve as the α-polyglucan-binding site.
T6 842-1042 Sentence denotes Amino acid residues Asp344 and Glu399, which are postulated to play an essential role in catalysis as a nucleophile and a general acid/base, respectively, are located at a central cleft in the groove.
T7 1043-1295 Sentence denotes Moreover, structural comparison revealed that in BEI, extended loop structures cause a narrowing of the substrate-binding site, whereas shortened loop structures make a larger space at the corresponding subsite in the Klebsiella pneumoniae pullulanase.
T8 1296-1448 Sentence denotes This structural difference might be attributed to distinct catalytic reactions, transglycosylation and hydrolysis, respectively, by BEI and pullulanase.

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 45-48 http://identifiers.org/oryzabase.gene/730 denotes BEI
T2 331-334 http://identifiers.org/oryzabase.gene/730 denotes BEI
T3 544-547 http://identifiers.org/oryzabase.gene/730 denotes BEI
T4 690-693 http://identifiers.org/oryzabase.gene/730 denotes BEI
T5 1092-1095 http://identifiers.org/oryzabase.gene/730 denotes BEI
T6 1428-1431 http://identifiers.org/oryzabase.gene/730 denotes BEI
T93073 45-48 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T96840 331-334 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T47010 544-547 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T39628 690-693 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T82048 1092-1095 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T570 1428-1431 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 873-879 hunflair:NA:Chemical denotes Glu399
M_1 25-43 hunflair:NA:Gene denotes branching enzyme I
M_2 311-329 hunflair:NA:Gene denotes branching enzyme I
M_3 55-67 hunflair:NA:Species denotes Oryza sativa
M_4 1261-1282 hunflair:NA:Species denotes Klebsiella pneumoniae
M_5 446-458 hunflair:NA:Chemical denotes carbohydrate
M_6 306-329 hunflair:NA:Gene denotes rice-branching enzyme I
M_7 306-310 hunflair:NA:Species denotes rice
M_8 45-48 hunflair:NA:Chemical denotes BEI
M_9 331-334 hunflair:NA:Chemical denotes BEI
M_10 544-547 hunflair:NA:Chemical denotes BEI
M_11 690-693 hunflair:NA:Chemical denotes BEI
M_12 1092-1095 hunflair:NA:Chemical denotes BEI
M_13 1428-1431 hunflair:NA:Chemical denotes BEI
M_14 862-868 hunflair:NA:Chemical denotes Asp344
M_15 125-148 hunflair:NA:Gene denotes Starch-branching enzyme
M_16 45-48 hunflair:NA:Gene denotes BEI
M_17 331-334 hunflair:NA:Gene denotes BEI
M_18 544-547 hunflair:NA:Gene denotes BEI
M_19 690-693 hunflair:NA:Gene denotes BEI
M_20 1092-1095 hunflair:NA:Gene denotes BEI
M_21 1428-1431 hunflair:NA:Gene denotes BEI
M_22 608-624 hunflair:NA:Species denotes Escherichia coli
M_23 1283-1294 hunflair:NA:Gene denotes pullulanase
M_24 1436-1447 hunflair:NA:Gene denotes pullulanase
M_25 842-852 hunflair:NA:Chemical denotes Amino acid
M_26 387-396 hunflair:NA:Gene denotes α-amylase
M_27 485-494 hunflair:NA:Gene denotes α-amylase

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 25-43 http://identifiers.org/oryzabase.gene/730 denotes branching enzyme I
T2 45-48 http://identifiers.org/oryzabase.gene/730 denotes BEI
T3 311-329 http://identifiers.org/oryzabase.gene/730 denotes branching enzyme I
T4 331-334 http://identifiers.org/oryzabase.gene/730 denotes BEI
T5 544-547 http://identifiers.org/oryzabase.gene/730 denotes BEI
T6 690-693 http://identifiers.org/oryzabase.gene/730 denotes BEI
T7 1092-1095 http://identifiers.org/oryzabase.gene/730 denotes BEI
T8 1283-1294 http://identifiers.org/oryzabase.gene/8905 denotes pullulanase
T9 1428-1431 http://identifiers.org/oryzabase.gene/730 denotes BEI
T10 1436-1447 http://identifiers.org/oryzabase.gene/8905 denotes pullulanase
T22276 25-43 http://identifiers.org/ricegap/LOC_Os06g51084 denotes branching enzyme I
T1213 45-48 http://identifiers.org/ricegap/LOC_Os06g51084 denotes BEI
T80850 311-329 http://identifiers.org/ricegap/LOC_Os06g51084 denotes branching enzyme I
T50576 331-334 http://identifiers.org/ricegap/LOC_Os06g51084 denotes BEI
T99791 544-547 http://identifiers.org/ricegap/LOC_Os06g51084 denotes BEI
T73511 690-693 http://identifiers.org/ricegap/LOC_Os06g51084 denotes BEI
T28812 1092-1095 http://identifiers.org/ricegap/LOC_Os06g51084 denotes BEI
T86823 1428-1431 http://identifiers.org/ricegap/LOC_Os06g51084 denotes BEI
T37879 25-43 http://identifiers.org/rapdb.locus/Os06g0726400 denotes branching enzyme I
T55293 45-48 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T27566 311-329 http://identifiers.org/rapdb.locus/Os06g0726400 denotes branching enzyme I
T75723 331-334 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T44133 544-547 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T44181 690-693 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T85707 1092-1095 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T5622 1283-1294 http://identifiers.org/rapdb.locus/Os04g0164900 denotes pullulanase
T10241 1428-1431 http://identifiers.org/rapdb.locus/Os06g0726400 denotes BEI
T55738 1436-1447 http://identifiers.org/rapdb.locus/Os04g0164900 denotes pullulanase
T102 25-43 http://identifiers.org/uniprot/Q01401 denotes branching enzyme I
T54332 25-43 http://identifiers.org/uniprot/D0TZI4 denotes branching enzyme I
T4595 25-43 http://identifiers.org/uniprot/A3BFK2 denotes branching enzyme I
T46561 45-48 http://identifiers.org/uniprot/Q01401 denotes BEI
T35393 45-48 http://identifiers.org/uniprot/D0TZI4 denotes BEI
T32494 45-48 http://identifiers.org/uniprot/A3BFK2 denotes BEI
T65398 311-329 http://identifiers.org/uniprot/Q01401 denotes branching enzyme I
T96855 311-329 http://identifiers.org/uniprot/D0TZI4 denotes branching enzyme I
T92159 311-329 http://identifiers.org/uniprot/A3BFK2 denotes branching enzyme I
T75973 331-334 http://identifiers.org/uniprot/Q01401 denotes BEI
T11 331-334 http://identifiers.org/uniprot/D0TZI4 denotes BEI
T12 331-334 http://identifiers.org/uniprot/A3BFK2 denotes BEI
T13 544-547 http://identifiers.org/uniprot/Q01401 denotes BEI
T14 544-547 http://identifiers.org/uniprot/D0TZI4 denotes BEI
T15 544-547 http://identifiers.org/uniprot/A3BFK2 denotes BEI
T16 690-693 http://identifiers.org/uniprot/Q01401 denotes BEI
T17 690-693 http://identifiers.org/uniprot/D0TZI4 denotes BEI
T18 690-693 http://identifiers.org/uniprot/A3BFK2 denotes BEI
T19 1092-1095 http://identifiers.org/uniprot/Q01401 denotes BEI
T20 1092-1095 http://identifiers.org/uniprot/D0TZI4 denotes BEI
T21 1092-1095 http://identifiers.org/uniprot/A3BFK2 denotes BEI
T22 1428-1431 http://identifiers.org/uniprot/Q01401 denotes BEI
T23 1428-1431 http://identifiers.org/uniprot/D0TZI4 denotes BEI
T24 1428-1431 http://identifiers.org/uniprot/A3BFK2 denotes BEI
M_0 873-879 hunflair:NA:Chemical denotes Glu399
M_1 25-43 hunflair:NA:Gene denotes branching enzyme I
M_2 311-329 hunflair:NA:Gene denotes branching enzyme I
M_3 55-67 hunflair:NA:Species denotes Oryza sativa
M_4 1261-1282 hunflair:NA:Species denotes Klebsiella pneumoniae
M_5 446-458 hunflair:NA:Chemical denotes carbohydrate
M_6 306-329 hunflair:NA:Gene denotes rice-branching enzyme I
M_7 306-310 hunflair:NA:Species denotes rice
M_8 45-48 hunflair:NA:Chemical denotes BEI
M_9 331-334 hunflair:NA:Chemical denotes BEI
M_10 544-547 hunflair:NA:Chemical denotes BEI
M_11 690-693 hunflair:NA:Chemical denotes BEI
M_12 1092-1095 hunflair:NA:Chemical denotes BEI
M_13 1428-1431 hunflair:NA:Chemical denotes BEI
M_14 862-868 hunflair:NA:Chemical denotes Asp344
M_15 125-148 hunflair:NA:Gene denotes Starch-branching enzyme
M_16 45-48 hunflair:NA:Gene denotes BEI
M_17 331-334 hunflair:NA:Gene denotes BEI
M_18 544-547 hunflair:NA:Gene denotes BEI
M_19 690-693 hunflair:NA:Gene denotes BEI
M_20 1092-1095 hunflair:NA:Gene denotes BEI
M_21 1428-1431 hunflair:NA:Gene denotes BEI
M_22 608-624 hunflair:NA:Species denotes Escherichia coli
M_23 1283-1294 hunflair:NA:Gene denotes pullulanase
M_24 1436-1447 hunflair:NA:Gene denotes pullulanase
M_25 842-852 hunflair:NA:Chemical denotes Amino acid
M_26 387-396 hunflair:NA:Gene denotes α-amylase
M_27 485-494 hunflair:NA:Gene denotes α-amylase

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 denotes Escherichia coli
_T2 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 denotes Escherichia coli
_T3 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 denotes Escherichia coli
_T4 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 denotes Escherichia coli
_T5 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 denotes Escherichia coli
_T6 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 denotes Escherichia coli
_T7 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 denotes Escherichia coli
_T8 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 denotes Escherichia coli
_T9 608-624 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 denotes Escherichia coli
_T10 1261-1282 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC136,LEC221,LEC595 denotes Klebsiella pneumoniae

ICD10

Id Subject Object Predicate Lexical cue
T1 1272-1282 http://purl.bioontology.org/ontology/ICD10/J18.9 denotes pneumoniae

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 25-34 FMAID:226027 denotes branching
_T2 25-34 FMAID:226028 denotes branching
_T3 132-141 FMAID:226028 denotes branching
_T4 132-141 FMAID:226027 denotes branching
_T5 252-258 FMAID:226028 denotes branch
_T6 252-258 FMAID:226027 denotes branch
_T7 259-264 FMAID:50596 denotes point
_T8 259-264 FMAID:146304 denotes point
_T9 311-320 FMAID:226028 denotes branching
_T10 311-320 FMAID:226027 denotes branching
_T11 379-386 FMAID:242678 denotes central
_T12 379-386 FMAID:174816 denotes central
_T13 379-386 FMAID:30328 denotes central
_T14 407-414 FMAID:104341 denotes flanked
_T15 446-458 FMAID:197276 denotes carbohydrate
_T16 446-458 FMAID:82737 denotes carbohydrate
_T17 625-633 FMAID:82747 denotes glycogen
_T18 625-633 FMAID:196736 denotes glycogen
_T19 774-780 FMAID:180723 denotes groove
_T20 774-780 FMAID:75037 denotes groove
_T21 842-852 FMAID:196728 denotes Amino acid
_T22 842-852 FMAID:82739 denotes Amino acid
_T23 1014-1021 FMAID:30328 denotes central
_T24 1014-1021 FMAID:174816 denotes central
_T25 1014-1021 FMAID:242678 denotes central
_T26 1035-1041 FMAID:75037 denotes groove
_T27 1035-1041 FMAID:180723 denotes groove

uniprot-human

Id Subject Object Predicate Lexical cue
T1 25-41 http://www.uniprot.org/uniprot/Q04446 denotes branching enzyme
T2 132-148 http://www.uniprot.org/uniprot/Q04446 denotes branching enzyme
T3 311-327 http://www.uniprot.org/uniprot/Q04446 denotes branching enzyme
T4 175-181 http://www.uniprot.org/uniprot/P13674 denotes α-1, 4
T5 222-234 http://www.uniprot.org/uniprot/O43451 denotes α-1,4 glucan
T6 222-234 http://www.uniprot.org/uniprot/Q2M2H8 denotes α-1,4 glucan

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 25-41 http://www.uniprot.org/uniprot/Q9D6Y9 denotes branching enzyme
T2 132-148 http://www.uniprot.org/uniprot/Q9D6Y9 denotes branching enzyme
T3 311-327 http://www.uniprot.org/uniprot/Q9D6Y9 denotes branching enzyme

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 55-60 http://purl.bioontology.org/ontology/NCBITAXON/4527 denotes Oryza
T2 55-67 http://purl.bioontology.org/ontology/NCBITAXON/4530 denotes Oryza sativa
T3 608-619 http://purl.bioontology.org/ontology/NCBITAXON/561 denotes Escherichia
T4 1261-1271 http://purl.bioontology.org/ontology/NCBITAXON/415850 denotes Klebsiella
T5 1261-1271 http://purl.bioontology.org/ontology/NCBITAXON/570 denotes Klebsiella
T6 1261-1282 http://purl.bioontology.org/ontology/NCBITAXON/573 denotes Klebsiella pneumoniae

GO-BP

Id Subject Object Predicate Lexical cue
T1 125-148 http://purl.obolibrary.org/obo/GO_0003844 denotes Starch-branching enzyme

GO-MF

Id Subject Object Predicate Lexical cue
T1 116-123 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T2 459-466 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T3 828-835 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T4 1157-1164 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T5 116-123 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T6 459-466 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T7 828-835 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T8 1157-1164 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T9 116-123 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T10 459-466 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T11 828-835 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T12 1157-1164 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T13 116-123 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T14 459-466 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T15 828-835 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T16 1157-1164 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17 116-131 http://purl.obolibrary.org/obo/GO_2001070 denotes binding. Starch
T18 446-466 http://purl.obolibrary.org/obo/GO_0030246 denotes carbohydrate-binding

GO-CC

Id Subject Object Predicate Lexical cue
T1 774-780 http://purl.obolibrary.org/obo/GO_0097610 denotes groove
T2 1035-1041 http://purl.obolibrary.org/obo/GO_0097610 denotes groove

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 379-386 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central
T2 1014-1021 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central

Allie

Id Subject Object Predicate Lexical cue
SS1_21493662_0_0 25-43 expanded denotes branching enzyme I
SS2_21493662_0_0 45-48 abbr denotes BEI
SS1_21493662_2_0 306-329 expanded denotes rice-branching enzyme I
SS2_21493662_2_0 331-334 abbr denotes BEI
AE1_21493662_0_0 SS1_21493662_0_0 SS2_21493662_0_0 abbreviatedTo branching enzyme I,BEI
AE1_21493662_2_0 SS1_21493662_2_0 SS2_21493662_2_0 abbreviatedTo rice-branching enzyme I,BEI

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 379-386 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central
PD-UBERON-AE-B_T2 1014-1021 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 1261-1282 Disease denotes Klebsiella pneumoniae http://purl.obolibrary.org/obo/MONDO_0030602

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-124 Sentence denotes Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
T2 125-280 Sentence denotes Starch-branching enzyme catalyzes the cleavage of α-1, 4-linkages and the subsequent transfer of α-1,4 glucan to form an α-1,6 branch point in amylopectin.
T3 281-504 Sentence denotes Sequence analysis of the rice-branching enzyme I (BEI) indicated a modular structure in which the central α-amylase domain is flanked on each side by the N-terminal carbohydrate-binding module 48 and the α-amylase C-domain.
T4 505-655 Sentence denotes We determined the crystal structure of BEI at a resolution of 1.9 Å by molecular replacement using the Escherichia coli glycogen BE as a search model.
T5 656-841 Sentence denotes Despite three modular structures, BEI is roughly ellipsoidal in shape with two globular domains that form a prominent groove which is proposed to serve as the α-polyglucan-binding site.
T6 842-1042 Sentence denotes Amino acid residues Asp344 and Glu399, which are postulated to play an essential role in catalysis as a nucleophile and a general acid/base, respectively, are located at a central cleft in the groove.
T7 1043-1295 Sentence denotes Moreover, structural comparison revealed that in BEI, extended loop structures cause a narrowing of the substrate-binding site, whereas shortened loop structures make a larger space at the corresponding subsite in the Klebsiella pneumoniae pullulanase.
T8 1296-1448 Sentence denotes This structural difference might be attributed to distinct catalytic reactions, transglycosylation and hydrolysis, respectively, by BEI and pullulanase.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 55-67 OrganismTaxon denotes Oryza sativa 4530
T2 306-310 OrganismTaxon denotes rice 4530
T3 608-624 OrganismTaxon denotes Escherichia coli 562
T4 764-773 OrganismTaxon denotes prominent 37571
T5 1261-1282 OrganismTaxon denotes Klebsiella pneumoniae 573

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 774-780 Body_part denotes groove http://purl.obolibrary.org/obo/UBERON_0004704|http://purl.obolibrary.org/obo/UBERON_0006846|http://purl.obolibrary.org/obo/UBERON_0014764
T4 1035-1041 Body_part denotes groove http://purl.obolibrary.org/obo/UBERON_0004704|http://purl.obolibrary.org/obo/UBERON_0006846|http://purl.obolibrary.org/obo/UBERON_0014764
T7 1219-1224 Body_part denotes space http://purl.obolibrary.org/obo/UBERON_0000464

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 1272-1282 Phenotype denotes pneumoniae HP:0002090