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PubMed:21325775 / 0-182 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-118 Sentence denotes A novel apolipoprotein E mutation, ApoE Osaka (Arg158 Pro), in a dyslipidemic patient with lipoprotein glomerulopathy.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
8534 8-24 GeneOrGeneProduct denotes apolipoprotein E NCBIGene:348
8535 35-39 GeneOrGeneProduct denotes ApoE NCBIGene:348
8536 47-57 SequenceVariant denotes Arg158 Pro p|SUB|R|158|P
8537 65-77 DiseaseOrPhenotypicFeature denotes dyslipidemic MESH:D050171
8538 78-85 OrganismTaxon denotes patient NCBITaxon:9606
8539 91-117 DiseaseOrPhenotypicFeature denotes lipoprotein glomerulopathy MESH:C567089
8540 119-145 DiseaseOrPhenotypicFeature denotes Lipoprotein glomerulopathy MESH:C567089
8541 147-150 DiseaseOrPhenotypicFeature denotes LPG MESH:C567089

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 91-117 DiseaseOrPhenotypicFeature denotes lipoprotein glomerulopathy 0012725
T2 119-145 DiseaseOrPhenotypicFeature denotes Lipoprotein glomerulopathy 0012725
T3 157-161 DiseaseOrPhenotypicFeature denotes rare 0021136

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T1 47-57 SequenceVariant denotes Arg158 Pro

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 2-7 GeneOrGeneProduct denotes novel
T2 8-24 GeneOrGeneProduct denotes apolipoprotein E
T3 25-33 GeneOrGeneProduct denotes mutation
T4 35-39 GeneOrGeneProduct denotes ApoE
T5 60-64 GeneOrGeneProduct denotes in a
T6 91-102 GeneOrGeneProduct denotes lipoprotein
T7 119-130 GeneOrGeneProduct denotes Lipoprotein
T8 157-161 GeneOrGeneProduct denotes rare

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 2-7 GeneOrGeneProduct denotes novel
T2 8-24 GeneOrGeneProduct denotes apolipoprotein E
T3 91-102 GeneOrGeneProduct denotes lipoprotein
T4 119-130 GeneOrGeneProduct denotes Lipoprotein
T5 157-161 GeneOrGeneProduct denotes rare

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 91-117 DiseaseOrPhenotypicFeature denotes lipoprotein glomerulopathy C567089
T2 119-145 DiseaseOrPhenotypicFeature denotes Lipoprotein glomerulopathy C567089
T3 147-150 DiseaseOrPhenotypicFeature denotes LPG C567089
T4 157-169 DiseaseOrPhenotypicFeature denotes rare disease D035583

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 8-24 GeneOrGeneProduct denotes apolipoprotein E
T2 91-102 GeneOrGeneProduct denotes lipoprotein
T3 119-130 GeneOrGeneProduct denotes Lipoprotein

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 91-117 DiseaseOrPhenotypicFeature denotes lipoprotein glomerulopathy 0012725
T2 119-145 DiseaseOrPhenotypicFeature denotes Lipoprotein glomerulopathy 0012725
T3 147-150 DiseaseOrPhenotypicFeature denotes LPG 0012725

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 65-77 DiseaseOrPhenotypicFeature denotes dyslipidemic DISEASE
T2 91-117 DiseaseOrPhenotypicFeature denotes lipoprotein glomerulopathy C567089
T3 119-145 DiseaseOrPhenotypicFeature denotes Lipoprotein glomerulopathy C567089
T4 147-150 DiseaseOrPhenotypicFeature denotes LPG C567089
T5 157-169 DiseaseOrPhenotypicFeature denotes rare disease D035583

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 65-77 DiseaseOrPhenotypicFeature denotes dyslipidemic DISEASE
T2 91-117 DiseaseOrPhenotypicFeature denotes lipoprotein glomerulopathy C567089
T3 119-145 DiseaseOrPhenotypicFeature denotes Lipoprotein glomerulopathy C567089
T4 147-150 DiseaseOrPhenotypicFeature denotes LPG C567089

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 8-22 ChemicalEntity denotes apolipoprotein http://purl.obolibrary.org/obo/CHEBI_39015
T2 54-57 ChemicalEntity denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342
T3 147-150 ChemicalEntity denotes LPG http://purl.obolibrary.org/obo/CHEBI_59681

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 78-85 OrganismTaxon denotes patient

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T3 147-150 ChemicalEntity denotes LPG http://purl.obolibrary.org/obo/CHEBI_59681
T2 54-57 ChemicalEntity denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342
T1 8-22 ChemicalEntity denotes apolipoprotein http://purl.obolibrary.org/obo/CHEBI_39015
T86738 119-130 GeneOrGeneProduct denotes Lipoprotein
T85608 91-102 GeneOrGeneProduct denotes lipoprotein
T9920 8-24 GeneOrGeneProduct denotes apolipoprotein E
T91188 147-150 DiseaseOrPhenotypicFeature denotes LPG C567089
T65387 119-145 DiseaseOrPhenotypicFeature denotes Lipoprotein glomerulopathy C567089
T19616 91-117 DiseaseOrPhenotypicFeature denotes lipoprotein glomerulopathy C567089
T53256 65-77 DiseaseOrPhenotypicFeature denotes dyslipidemic DISEASE
T69208 78-85 OrganismTaxon denotes patient
T38839 47-57 SequenceVariant denotes Arg158 Pro

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-118 Sentence denotes A novel apolipoprotein E mutation, ApoE Osaka (Arg158 Pro), in a dyslipidemic patient with lipoprotein glomerulopathy.
T1 0-118 Sentence denotes A novel apolipoprotein E mutation, ApoE Osaka (Arg158 Pro), in a dyslipidemic patient with lipoprotein glomerulopathy.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 8-24 gene:348 denotes apolipoprotein E
T1 91-117 disease:C2673196 denotes lipoprotein glomerulopathy
T3 119-145 disease:C2673196 denotes Lipoprotein glomerulopathy
T5 157-169 disease:C0678236 denotes rare disease
T7 147-150 disease:C2673196 denotes LPG
T9 119-145 disease:C2673196 denotes Lipoprotein glomerulopathy
T11 157-169 disease:C0678236 denotes rare disease
T13 147-150 disease:C2673196 denotes LPG
R1 T0 T1 associated_with apolipoprotein E,lipoprotein glomerulopathy

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 131-145 HP_0100820 denotes glomerulopathy

Allie

Id Subject Object Predicate Lexical cue
SS1_21325775_1_0 119-145 expanded denotes Lipoprotein glomerulopathy
SS2_21325775_1_0 147-150 abbr denotes LPG
AE1_21325775_1_0 SS1_21325775_1_0 SS2_21325775_1_0 abbreviatedTo Lipoprotein glomerulopathy,LPG

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
21325775-0#8#24#gene348 8-24 gene348 denotes apolipoprotein E
21325775-0#91#117#diseaseC2673196 91-117 diseaseC2673196 denotes lipoprotein glomerulopathy
8#24#gene34891#117#diseaseC2673196 21325775-0#8#24#gene348 21325775-0#91#117#diseaseC2673196 associated_with apolipoprotein E,lipoprotein glomerulopathy

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 131-145 HP:0100820 denotes glomerulopathy
TI1 103-117 HP:0100820 denotes glomerulopathy

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 119-145 ORDO:329481 denotes Lipoprotein glomerulopathy
AB2 147-150 ORDO:329481 denotes LPG
TI1 91-117 ORDO:329481 denotes lipoprotein glomerulopathy

tmVarCorpus

Id Subject Object Predicate Lexical cue
T1 47-57 ProteinMutation:p|SUB|R|158|P denotes Arg158 Pro