PubMed:21219851 / 1298-1526 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T10 0-228 Sentence denotes Furthermore, we established a small amplicon genotyping (SAG) method for detecting three high frequency coding-region SNPs (rs1800255:G>A, rs1801184:T>C, and rs2271683:A>G) in COL3A1 to differentiate mutations before sequencing.

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 57-60 OrganismTaxon denotes SAG NCBItxid:59303

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
8498 124-133 SequenceVariant denotes rs1800255 DBSNP:rs1800255
8499 134-137 SequenceVariant denotes G>A DBSNP:rs1800255
8500 139-148 SequenceVariant denotes rs1801184 DBSNP:rs1801184
8501 149-152 SequenceVariant denotes T>C DBSNP:rs1801184
8502 158-167 SequenceVariant denotes rs2271683 DBSNP:rs2271683
8503 168-171 SequenceVariant denotes A>G DBSNP:rs2271683
8504 176-182 GeneOrGeneProduct denotes COL3A1 NCBIGene:1281

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T3 124-133 SequenceVariant denotes rs1800255
T4 139-148 SequenceVariant denotes rs1801184
T5 158-167 SequenceVariant denotes rs2271683

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T46 30-35 GeneOrGeneProduct denotes small
T47 57-60 GeneOrGeneProduct denotes SAG
T48 62-68 GeneOrGeneProduct denotes method
T49 89-93 GeneOrGeneProduct denotes high
T50 94-103 GeneOrGeneProduct denotes frequency
T51 176-182 GeneOrGeneProduct denotes COL3A1
T52 200-209 GeneOrGeneProduct denotes mutations

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T19 30-35 GeneOrGeneProduct denotes small
T20 57-60 GeneOrGeneProduct denotes SAG
T21 62-68 GeneOrGeneProduct denotes method
T22 89-93 GeneOrGeneProduct denotes high
T23 94-103 GeneOrGeneProduct denotes frequency
T24 176-182 GeneOrGeneProduct denotes COL3A1

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T8 57-60 GeneOrGeneProduct denotes SAG
T9 176-182 GeneOrGeneProduct denotes COL3A1

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 57-60 ChemicalEntity denotes SAG http://purl.obolibrary.org/obo/CHEBI_138438

LitCoin-training-merged

Id Subject Object Predicate Lexical cue ID:
T1 57-60 ChemicalEntity denotes SAG http://purl.obolibrary.org/obo/CHEBI_138438
T9 176-182 GeneOrGeneProduct denotes COL3A1
T8 57-60 GeneOrGeneProduct denotes SAG
T71565 158-167 SequenceVariant denotes rs2271683
T83194 139-148 SequenceVariant denotes rs1801184
T55173 124-133 SequenceVariant denotes rs1800255

Allie

Id Subject Object Predicate Lexical cue
SS1_21219851_9_0 30-55 expanded denotes small amplicon genotyping
SS2_21219851_9_0 57-60 abbr denotes SAG
AE1_21219851_9_0 SS1_21219851_9_0 SS2_21219851_9_0 abbreviatedTo small amplicon genotyping,SAG

tmVarCorpus

Id Subject Object Predicate Lexical cue
T3 124-133 SNP:rs1800255 denotes rs1800255
T4 134-137 DNAMutation:|SUB|G||A denotes G>A
T5 139-148 SNP:rs1801184 denotes rs1801184
T6 149-152 DNAMutation:|SUB|T||C denotes T>C
T7 158-167 SNP:rs2271683 denotes rs2271683
T8 168-171 DNAMutation:|SUB|A||G denotes A>G