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PubMed:2116413 JSONTXT

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Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 269-273 http://purl.obolibrary.org/obo/MAT_0000284 denotes skin

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-103 Sentence denotes Mutations that substitute serine for glycine alpha 1-598 and glycine alpha 1-631 in type I procollagen.
TextSentencer_T2 104-259 Sentence denotes The effects on thermal unfolding of the triple helix are position-specific and demonstrate that the protein unfolds through a series of cooperative blocks.
TextSentencer_T3 260-426 Sentence denotes Cultured skin fibroblasts from two probands with lethal variants of osteogenesis imperfecta synthesized type I procollagen that was posttranslationally over-modified.
TextSentencer_T4 427-724 Sentence denotes Analysis of cDNAs and genomic DNAs from the two probands demonstrated that proband I had a single-base mutation that converted the codon for glycine alpha 1-631 to a codon for serine, and proband II had a single-base mutation that converted the codon for glycine alpha 1-598 to a codon for serine.
TextSentencer_T5 725-940 Sentence denotes Although the two serine-for-glycine substitutions were separated by only 35 residues, they had markedly different effects on the thermal unfolding of the collagen triple helix as assayed by brief protease digestion.
TextSentencer_T6 941-1060 Sentence denotes The type I procollagen from proband I (serine alpha 1-631) had an essentially normal temperature for thermal unfolding.
TextSentencer_T7 1061-1227 Sentence denotes In contrast, type I procollagen from proband II (serine alpha 1-598) was cleaved to readily identifiable intermediate fragments of about 630 residues at 20 degrees C.
TextSentencer_T8 1228-1441 Sentence denotes With procollagens from both probands, collagenase A fragments containing the first 775 amino acids of the alpha chain domains had a lowered temperature for thermal unfolding as assayed by brief protease digestion.
TextSentencer_T9 1442-1611 Sentence denotes The collagenase A fragments from proband I were cleaved to intermediates of about 600 amino acids at 36 degrees C and to fragments of about 510 residues at 37 degrees C.
TextSentencer_T10 1612-1823 Sentence denotes The collagenase A fragments from proband II were cleaved to intermediates of about 630 residues at 32 degrees C, to fragments of about 600 residues at 36 degrees C, and to fragments of about 510 at 37 degrees C.
TextSentencer_T11 1824-2007 Sentence denotes The fragments of about 510 residues from both mutated procollagens were more stable to protease digestion than the collagenase A fragments of 775 residues from normal type I collagen.
TextSentencer_T12 2008-2147 Sentence denotes The results demonstrate that the effects of glycine substitutions on the thermal unfolding of type I collagen are highly position-specific.
TextSentencer_T13 2148-2374 Sentence denotes They also provide direct evidence for previous indications that the triple helix of the protein undergoes micro-unfolding of a series of relatively independent "cooperative blocks" in the predenaturation range of temperatures.
T1 0-103 Sentence denotes Mutations that substitute serine for glycine alpha 1-598 and glycine alpha 1-631 in type I procollagen.
T2 104-259 Sentence denotes The effects on thermal unfolding of the triple helix are position-specific and demonstrate that the protein unfolds through a series of cooperative blocks.
T3 260-426 Sentence denotes Cultured skin fibroblasts from two probands with lethal variants of osteogenesis imperfecta synthesized type I procollagen that was posttranslationally over-modified.
T4 427-724 Sentence denotes Analysis of cDNAs and genomic DNAs from the two probands demonstrated that proband I had a single-base mutation that converted the codon for glycine alpha 1-631 to a codon for serine, and proband II had a single-base mutation that converted the codon for glycine alpha 1-598 to a codon for serine.
T5 725-940 Sentence denotes Although the two serine-for-glycine substitutions were separated by only 35 residues, they had markedly different effects on the thermal unfolding of the collagen triple helix as assayed by brief protease digestion.
T6 941-1060 Sentence denotes The type I procollagen from proband I (serine alpha 1-631) had an essentially normal temperature for thermal unfolding.
T7 1061-1227 Sentence denotes In contrast, type I procollagen from proband II (serine alpha 1-598) was cleaved to readily identifiable intermediate fragments of about 630 residues at 20 degrees C.
T8 1228-1441 Sentence denotes With procollagens from both probands, collagenase A fragments containing the first 775 amino acids of the alpha chain domains had a lowered temperature for thermal unfolding as assayed by brief protease digestion.
T9 1442-1611 Sentence denotes The collagenase A fragments from proband I were cleaved to intermediates of about 600 amino acids at 36 degrees C and to fragments of about 510 residues at 37 degrees C.
T10 1612-1823 Sentence denotes The collagenase A fragments from proband II were cleaved to intermediates of about 630 residues at 32 degrees C, to fragments of about 600 residues at 36 degrees C, and to fragments of about 510 at 37 degrees C.
T11 1824-2007 Sentence denotes The fragments of about 510 residues from both mutated procollagens were more stable to protease digestion than the collagenase A fragments of 775 residues from normal type I collagen.
T12 2008-2147 Sentence denotes The results demonstrate that the effects of glycine substitutions on the thermal unfolding of type I collagen are highly position-specific.
T13 2148-2374 Sentence denotes They also provide direct evidence for previous indications that the triple helix of the protein undergoes micro-unfolding of a series of relatively independent "cooperative blocks" in the predenaturation range of temperatures.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 364-382 gene:1278 denotes type I procollagen
T1 328-351 disease:C0029434 denotes osteogenesis imperfecta
R1 T0 T1 associated_with type I procollagen,osteogenesis imperfecta

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
2116413-1#104#122#gene1278 364-382 gene1278 denotes type I procollagen
2116413-1#68#91#diseaseC0029434 328-351 diseaseC0029434 denotes osteogenesis imperfecta
104#122#gene127868#91#diseaseC0029434 2116413-1#104#122#gene1278 2116413-1#68#91#diseaseC0029434 associated_with type I procollagen,osteogenesis imperfecta

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 151-156 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T2 895-900 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T3 2223-2228 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 151-156 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T2 895-900 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T3 2223-2228 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 328-351 ORDO:666 denotes osteogenesis imperfecta

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 328-351 Disease denotes osteogenesis imperfecta http://purl.obolibrary.org/obo/MONDO_0019019

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 269-273 Body_part denotes skin http://purl.obolibrary.org/obo/MAT_0000284

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 37-44 OrganismTaxon denotes glycine 3846
T2 61-68 OrganismTaxon denotes glycine 3846
T3 568-575 OrganismTaxon denotes glycine 3846
T4 682-689 OrganismTaxon denotes glycine 3846
T5 753-760 OrganismTaxon denotes glycine 3846
T6 2052-2059 OrganismTaxon denotes glycine 3846

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 151-156 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T2 269-285 Body_part denotes skin fibroblasts http://purl.obolibrary.org/obo/CL_0002620
T3 895-900 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T4 2223-2228 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 84-90 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T3 269-285 Cell denotes skin fibroblasts http://purl.obolibrary.org/obo/CL:0002620
T4 364-370 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T6 945-951 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T8 1074-1080 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T10 1991-1997 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T12 2102-2108 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138