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PubMed:2112575 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 18-23 DNA denotes c-fos
T2 25-30 DNA denotes c-jun
T3 36-47 DNA denotes c-myc genes
T4 78-98 cell_type denotes human lymphoid cells
T5 150-172 DNA denotes nuclear protooncogenes
T6 173-178 DNA denotes c-fos
T7 180-185 DNA denotes c-jun
T8 191-196 DNA denotes c-myc
T9 212-232 cell_type denotes human lymphoid cells
T10 313-323 RNA denotes c-myc mRNA
T11 334-372 cell_line denotes pre-B (Hyon) and T (DND-41) cell lines
T12 469-483 DNA denotes protooncogenes
T13 487-497 cell_line denotes Hyon cells
T14 662-667 DNA denotes c-fos
T15 672-683 DNA denotes c-myc genes
T16 749-759 cell_line denotes Hyon cells
T17 775-785 RNA denotes c-myc mRNA
T18 875-885 RNA denotes c-myc mRNA
T19 1000-1022 DNA denotes nuclear protooncogenes
T20 1072-1094 DNA denotes nuclear protooncogenes
T21 1121-1135 cell_type denotes lymphoid cells

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 4-14 cui:C0185117 denotes expression
E2-ti-1 18-23 cui:C0085301 denotes c-fos
E3-ti-1 25-30 cui:C0085942 denotes c-jun
E4-ti-1 36-47 cui:C0079068 denotes c-myc genes
E5-ti-1 64-74 cui:C0282498 denotes heat shock
E6-ti-1 78-83 cui:C0020114 denotes human
E7-ti-1 84-98 cui:C0086574 denotes lymphoid cells
T1 78-98 PART_OF denotes human lymphoid cells
T2 75-77 LOCATION_OF denotes in
T3 75-77 LOCATION_OF denotes in
T4 75-77 LOCATION_OF denotes in
E1-ab-1 104-110 cui:C1280500 denotes effect
E2-ab-1 114-124 cui:C0282498 denotes heat shock
E3-ab-1 132-142 cui:C0185117 denotes expression
E4-ab-1 150-157 cui:C0521447 denotes nuclear
E5-ab-1 158-178 cui:C0085940 denotes protooncogenes c-fos
E6-ab-1 180-185 cui:C0085942 denotes c-jun
E7-ab-1 191-196 cui:C0079068 denotes c-myc
E8-ab-1 212-217 cui:C0020114 denotes human
E9-ab-1 218-232 cui:C0086574 denotes lymphoid cells
T5 104-110 AFFECTS denotes effect
T6 104-110 AFFECTS denotes effect
T7 104-110 AFFECTS denotes effect
T8 212-232 PART_OF denotes human lymphoid cells
E1-ab-2 234-244 cui:C0282498 denotes Heat shock
E2-ab-2 255-263 cui:C0442805 denotes increase
E3-ab-2 267-272 cui:C0085301 denotes c-fos
E4-ab-2 277-282 cui:C0085942 denotes c-jun
E5-ab-2 283-287 cui:C0035696 denotes mRNA
E6-ab-2 288-294 cui:C0441889 denotes levels
E7-ab-2 301-309 cui:C0547047 denotes decrease
E8-ab-2 313-318 cui:C0079068 denotes c-myc
E9-ab-2 319-323 cui:C0035696 denotes mRNA
E10-ab-2 324-330 cui:C0441889 denotes levels
E11-ab-2 334-337 cui:C0740175 denotes pre
E12-ab-2 362-372 cui:C0007600 denotes cell lines
E13-ab-2 404-410 cui:C0205307 denotes normal
E14-ab-2 411-416 cui:C0020114 denotes human
E15-ab-2 417-427 cui:C0814999 denotes thymocytes
T9 310-312 COEXISTS_WITH denotes in
T10 411-427 PART_OF denotes human thymocytes
E1-ab-3 433-440 cui:C0392747 denotes changes
E2-ab-3 448-452 cui:C0035696 denotes mRNA
E3-ab-3 453-459 cui:C0441889 denotes levels
E4-ab-3 469-483 cui:C0033713 denotes protooncogenes
E5-ab-3 492-497 cui:C0007634 denotes cells
E6-ab-3 503-507 cui:C0205393 denotes most
E7-ab-3 532-541 cui:C0439237 denotes degrees C
T11 484-486 LOCATION_OF denotes in
E1-ab-4 543-550 cui:C0022702 denotes kinetic
E2-ab-4 551-559 cui:C0936012 denotes analysis
E3-ab-4 582-589 cui:C0392747 denotes changes
E4-ab-4 615-621 cui:C0456693 denotes 30 min
E5-ab-4 625-635 cui:C0282498 denotes heat shock
E1-ab-5 637-644 cui:C0205349 denotes Altered
E2-ab-5 645-658 cui:C0040649 denotes transcription
E3-ab-5 662-667 cui:C0085301 denotes c-fos
E4-ab-5 672-683 cui:C0079068 denotes c-myc genes
E5-ab-5 700-706 cui:C1280500 denotes effect
E6-ab-5 710-720 cui:C0282498 denotes heat shock
T12 700-706 AFFECTS denotes effect
T13 700-706 AFFECTS denotes effect
E1-ab-6 735-745 cui:C0282498 denotes heat shock
E2-ab-6 754-759 cui:C0007634 denotes cells
E3-ab-6 775-780 cui:C0079068 denotes c-myc
E4-ab-6 781-785 cui:C0035696 denotes mRNA
E5-ab-6 795-805 cui:C0442808 denotes increasing
E6-ab-6 810-819 cui:C0018517 denotes half-life
E7-ab-6 834-837 cui:C1524031 denotes min
E1-ab-7 843-850 cui:C1561607 denotes overall
E2-ab-7 851-857 cui:C1280500 denotes effect
E3-ab-7 861-871 cui:C0282498 denotes heat shock
E4-ab-7 875-880 cui:C0079068 denotes c-myc
E5-ab-7 881-885 cui:C0035696 denotes mRNA
E6-ab-7 908-914 cui:C0522501 denotes marked
E7-ab-7 933-946 cui:C0040649 denotes transcription
E1-ab-8 954-961 cui:C1274040 denotes results
E2-ab-8 983-996 cui:C0040649 denotes transcription
E3-ab-8 1000-1007 cui:C0521447 denotes nuclear
E4-ab-8 1008-1022 cui:C0033713 denotes protooncogenes
E5-ab-8 1039-1049 cui:C0282498 denotes heat shock
E6-ab-8 1063-1067 cui:C0035820 denotes role
E7-ab-8 1072-1079 cui:C0521447 denotes nuclear
E8-ab-8 1080-1094 cui:C0033713 denotes protooncogenes
E9-ab-8 1102-1117 cui:C0149784 denotes stress response
E10-ab-8 1121-1135 cui:C0086574 denotes lymphoid cells
T14 1026-1035 AFFECTS denotes regulated
T15 1095-1097 COEXISTS_WITH denotes in
R1 E7-ti-1 T1 subjectOf lymphoid cells,human lymphoid cells
R2 E6-ti-1 T1 objectOf human,human lymphoid cells
R3 E7-ti-1 T2 subjectOf lymphoid cells,in
R4 E4-ti-1 T2 objectOf c-myc genes,in
R5 E7-ti-1 T3 subjectOf lymphoid cells,in
R6 E3-ti-1 T3 objectOf c-jun,in
R7 E7-ti-1 T4 subjectOf lymphoid cells,in
R8 E2-ti-1 T4 objectOf c-fos,in
R9 E5-ab-1 T5 subjectOf protooncogenes c-fos,effect
R10 E2-ab-1 T5 objectOf heat shock,effect
R11 E7-ab-1 T6 subjectOf c-myc,effect
R12 E2-ab-1 T6 objectOf heat shock,effect
R13 E6-ab-1 T7 subjectOf c-jun,effect
R14 E2-ab-1 T7 objectOf heat shock,effect
R15 E9-ab-1 T8 subjectOf lymphoid cells,human lymphoid cells
R16 E8-ab-1 T8 objectOf human,human lymphoid cells
R17 E4-ab-2 T9 subjectOf c-jun,in
R18 E8-ab-2 T9 objectOf c-myc,in
R19 E15-ab-2 T10 subjectOf thymocytes,human thymocytes
R20 E14-ab-2 T10 objectOf human,human thymocytes
R21 E5-ab-3 T11 subjectOf cells,in
R22 E4-ab-3 T11 objectOf protooncogenes,in
R23 E4-ab-5 T12 subjectOf c-myc genes,effect
R24 E6-ab-5 T12 objectOf heat shock,effect
R25 E3-ab-5 T13 subjectOf c-fos,effect
R26 E6-ab-5 T13 objectOf heat shock,effect
R27 E5-ab-8 T14 subjectOf heat shock,regulated
R28 E2-ab-8 T14 objectOf transcription,regulated
R29 E2-ab-8 T15 subjectOf transcription,in
R30 E9-ab-8 T15 objectOf stress response,in

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-99 Sentence denotes The expression of c-fos, c-jun, and c-myc genes is regulated by heat shock in human lymphoid cells.
S2 100-233 Sentence denotes The effect of heat shock on the expression of the nuclear protooncogenes c-fos, c-jun, and c-myc was studied in human lymphoid cells.
S3 234-428 Sentence denotes Heat shock caused an increase in c-fos and c-jun mRNA levels and a decrease in c-myc mRNA levels in pre-B (Hyon) and T (DND-41) cell lines as well as in freshly isolated normal human thymocytes.
S4 429-636 Sentence denotes The changes in the mRNA levels of these protooncogenes in Hyon cells were most pronounced at 42 and 43 degrees C; kinetic analysis demonstrated that the changes could be detected within 30 min of heat shock.
S5 637-721 Sentence denotes Altered transcription of c-fos and c-myc genes was the primary effect of heat shock.
S6 722-838 Sentence denotes Secondarily, heat shock of Hyon cells stabilized the c-myc mRNA level by increasing its half-life from 24 to 45 min.
S7 839-947 Sentence denotes The overall effect of heat shock on c-myc mRNA level, however, was a marked inhibition of its transcription.
S8 948-1136 Sentence denotes These results demonstrate that the transcription of nuclear protooncogenes is regulated by heat shock indicating a role for nuclear protooncogenes in the stress response of lymphoid cells.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 18-47 NP denotes c-fos, c-jun, and c-myc genes
C1 0-47 NP denotes The expression of c-fos, c-jun, and c-myc genes
C3 64-74 NP denotes heat shock
C4 78-98 NP denotes human lymphoid cells
C5 114-124 NP denotes heat shock
C7 146-196 NP denotes the nuclear protooncogenes c-fos, c-jun, and c-myc
C6 128-196 NP denotes the expression of the nuclear protooncogenes c-fos, c-jun, and c-myc
C8 212-232 NP denotes human lymphoid cells
C9 234-244 NP denotes Heat shock
C11 463-483 NP denotes these protooncogenes
C12 487-497 NP denotes Hyon cells
C10 429-497 NP denotes The changes in the mRNA levels of these protooncogenes in Hyon cells
C13 578-589 NP denotes the changes
C14 625-635 NP denotes heat shock
C15 710-720 NP denotes heat shock
C16 735-745 NP denotes heat shock
C17 749-759 NP denotes Hyon cells
C18 771-791 NP denotes the c-myc mRNA level
C19 861-871 NP denotes heat shock
C20 875-891 NP denotes c-myc mRNA level
C21 929-932 NP denotes its
C22 1000-1022 NP denotes nuclear protooncogenes
C23 1039-1049 NP denotes heat shock
C24 1072-1094 NP denotes nuclear protooncogenes
C25 1121-1135 NP denotes lymphoid cells
R1 C5 C3 coref-ident heat shock,heat shock
R2 C7 C2 coref-ident "the nuclear protooncogenes c-fos, c-jun, and c-myc","c-fos, c-jun, and c-myc genes"
R3 C6 C1 coref-ident "the expression of the nuclear protooncogenes c-fos, c-jun, and c-myc","The expression of c-fos, c-jun, and c-myc genes"
R4 C8 C4 coref-ident human lymphoid cells,human lymphoid cells
R5 C9 C5 coref-ident Heat shock,heat shock
R6 C11 C7 coref-ident these protooncogenes,"the nuclear protooncogenes c-fos, c-jun, and c-myc"
R7 C13 C10 coref-ident the changes,The changes in the mRNA levels of these protooncogenes in Hyon cells
R8 C14 C9 coref-ident heat shock,Heat shock
R9 C15 C14 coref-ident heat shock,heat shock
R10 C16 C15 coref-ident heat shock,heat shock
R11 C17 C12 coref-ident Hyon cells,Hyon cells
R12 C19 C16 coref-ident heat shock,heat shock
R13 C20 C18 coref-ident c-myc mRNA level,the c-myc mRNA level
R14 C21 C20 coref-pron its,c-myc mRNA level
R15 C22 C11 coref-ident nuclear protooncogenes,these protooncogenes
R16 C23 C19 coref-ident heat shock,heat shock
R17 C24 C22 coref-ident nuclear protooncogenes,nuclear protooncogenes
R18 C25 C8 coref-ident lymphoid cells,human lymphoid cells

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 18-23 DNA_domain_or_region denotes c-fos
T2 25-30 DNA_domain_or_region denotes c-jun
T3 36-47 DNA_domain_or_region denotes c-myc genes
T4 64-74 other_name denotes heat shock
T5 78-98 cell_type denotes human lymphoid cells
T6 114-124 other_name denotes heat shock
T7 150-172 DNA_family_or_group denotes nuclear protooncogenes
T8 173-178 DNA_domain_or_region denotes c-fos
T9 180-185 DNA_domain_or_region denotes c-jun
T10 191-196 DNA_domain_or_region denotes c-myc
T11 212-232 cell_type denotes human lymphoid cells
T12 313-318 DNA_domain_or_region denotes c-myc
T13 448-459 other_name denotes mRNA levels
T14 469-483 DNA_family_or_group denotes protooncogenes
T15 487-497 cell_line denotes Hyon cells
T16 625-635 other_name denotes heat shock
T17 662-667 DNA_domain_or_region denotes c-fos
T18 672-677 DNA_domain_or_region denotes c-myc
T19 710-720 other_name denotes heat shock
T20 735-745 other_name denotes heat shock
T21 749-759 cell_line denotes Hyon cells
T22 775-780 DNA_domain_or_region denotes c-myc
T23 810-819 other_name denotes half-life
T24 861-871 other_name denotes heat shock
T25 875-880 DNA_domain_or_region denotes c-myc
T26 933-946 other_name denotes transcription
T27 983-996 other_name denotes transcription
T28 1000-1007 DNA_domain_or_region denotes nuclear
T29 1008-1022 DNA_family_or_group denotes protooncogenes
T30 1039-1049 other_name denotes heat shock
T31 1072-1079 DNA_family_or_group denotes nuclear
T32 1080-1094 DNA_family_or_group denotes protooncogenes
T33 1121-1135 cell_type denotes lymphoid cells

metamap-sample

Id Subject Object Predicate Lexical cue
T1 673-684 C0079068 denotes -myc genes
T2 37-48 C0079068 denotes -myc genes
T3 412-417 C0086418 denotes uman
T4 79-84 C0086418 denotes uman
T5 1122-1136 C0086574 denotes ymphoid cells.
T6 219-233 C0086574 denotes ymphoid cells.
T7 85-99 C0086574 denotes ymphoid cells.
T8 1040-1050 C0282498 denotes eat shock
T9 862-872 C0282498 denotes eat shock
T10 736-746 C0282498 denotes eat shock
T11 711-721 C0282498 denotes eat shock.
T12 626-636 C0282498 denotes eat shock.
T13 235-245 C0282498 denotes eat shock
T14 115-125 C0282498 denotes eat shock
T15 65-75 C0282498 denotes eat shock
T16 1027-1035 C0851285 denotes egulated
T17 52-61 C0851285 denotes egulated
T18 278-283 C0162508 denotes -jun
T19 181-186 C0162508 denotes -jun,
T20 26-31 C0162508 denotes -jun,
T21 133-143 C0185117 denotes xpression
T22 5-15 C0185117 denotes xpression
T23 85-93 C1518071 denotes ymphoid
T24 470-484 C0033713 denotes rotooncogenes
T25 882-886 C0035696 denotes RNA
T26 782-786 C0035696 denotes RNA
T27 449-453 C0035696 denotes RNA
T28 984-997 C0040649 denotes ranscription
T29 934-947 C0040649 denotes ranscription.
T30 646-659 C0040649 denotes ranscription
T31 867-872 C0036974 denotes hock
T32 716-721 C0036974 denotes hock.
T33 120-125 C0036974 denotes hock
T34 418-428 C0814999 denotes hymocytes.
T35 430-441 C0025320 denotes he changes
T36 887-892 C0441889 denotes evel,
T37 787-792 C0441889 denotes evel
T38 454-460 C0441889 denotes evels
T39 552-560 C1524024 denotes nalysis
T40 363-373 C0007600 denotes ell lines
T41 852-858 C1280500 denotes ffect
T42 701-707 C1280500 denotes ffect
T43 105-111 C1280500 denotes ffect
T44 151-158 C0521447 denotes uclear
T45 246-252 C0015127 denotes aused
T46 811-820 C0018517 denotes alf-life
T47 544-551 C0022702 denotes inetic
T48 844-851 C0282416 denotes verall
T49 876-881 C0086661 denotes -myc
T50 192-197 C0086661 denotes -myc
T51 755-760 C0007634 denotes ells
T52 493-498 C0007634 denotes ells
T53 396-404 C1548221 denotes solated
T54 583-590 C0443172 denotes hanges
T55 504-508 C0205393 denotes ost
T56 761-771 C0184512 denotes tabilized
T57 1103-1117 C0149784 denotes tress response
T58 955-962 C1274040 denotes esults
T59 533-542 C0439237 denotes egrees C;
T60 835-838 C0702093 denotes in.
T61 352-353 C2603360 denotes
T62 616-622 C1442458 denotes 0 min
T63 1064-1068 C1705810 denotes ole
T64 377-381 C0205170 denotes ell
T65 256-264 C0442805 denotes ncrease
T66 916-926 C0021469 denotes nhibition
T67 302-310 C0547047 denotes ecrease
T68 600-608 C0442726 denotes etected
T69 335-340 C1292769 denotes re-B
T70 405-410 C0439166 denotes ormal
T71 638-644 C0392747 denotes ltered
T72 909-915 C0522501 denotes arked
T73 693-700 C0205225 denotes rimary
T74 796-806 C0442808 denotes ncreasing