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PubMed:21062783 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 115-134 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T2 852-865 https://glytoucan.org/Structures/Glycans/G00023MO denotes peptidoglycan
T3 1261-1280 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 115-134 Glycan_Motif denotes N-acetyllactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO
T2 852-865 Glycan_Motif denotes peptidoglycan https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00023MO
T3 1261-1280 Glycan_Motif denotes N-acetyllactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 115-134 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T2 852-865 https://glytoucan.org/Structures/Glycans/G00023MO denotes peptidoglycan
T3 1261-1280 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-145 Sentence denotes Characterization of a novel Salmonella Typhimurium chitinase which hydrolyzes chitin, chitooligosaccharides and an N-acetyllactosamine conjugate.
TextSentencer_T2 146-260 Sentence denotes Salmonella contain genes annotated as chitinases; however, their chitinolytic activities have never been verified.
TextSentencer_T3 261-431 Sentence denotes We now demonstrate such an activity for a chitinase assigned to glycoside hydrolase family 18 encoded by the SL0018 (chiA) gene in Salmonella enterica Typhimurium SL1344.
TextSentencer_T4 432-615 Sentence denotes A C-terminal truncated form of chiA lacking a putative chitin-binding domain was amplified by PCR, cloned and expressed in Escherichia coli BL21 (DE3) with an N-terminal (His)(6) tag.
TextSentencer_T5 616-900 Sentence denotes The purified enzyme hydrolyzes 4-nitrophenyl N,N'-diacetyl-β-D-chitobioside, 4-nitrophenyl β-D-N,N',N″-triacetylchitotriose and carboxymethyl chitin Remazol Brilliant Violet but does not act on 4-nitrophenyl N-acetyl-β-D-glucosaminide, peptidoglycan or 4-nitrophenyl β-D-cellobioside.
TextSentencer_T6 901-1103 Sentence denotes Enzyme activity was also characterized by directly monitoring product formation using (1)H-nuclear magnetic resonance which showed that chitin is a substrate with the release of N,N'-diacetylchitobiose.
TextSentencer_T7 1104-1235 Sentence denotes Hydrolysis occurs with the retention of configuration and the enzyme acts on only the β-anomers of chitooligosaccharide substrates.
TextSentencer_T8 1236-1440 Sentence denotes The enzyme also released N-acetyllactosamine disaccharide from Galβ1 → 4GlcNAcβ-O-(CH(2))(8)CONH(CH(2))(2)NHCO-tetramethylrhodamine, a model substrate for LacNAc terminating glycoproteins and glycolipids.
T1 0-145 Sentence denotes Characterization of a novel Salmonella Typhimurium chitinase which hydrolyzes chitin, chitooligosaccharides and an N-acetyllactosamine conjugate.
T2 146-260 Sentence denotes Salmonella contain genes annotated as chitinases; however, their chitinolytic activities have never been verified.
T3 261-431 Sentence denotes We now demonstrate such an activity for a chitinase assigned to glycoside hydrolase family 18 encoded by the SL0018 (chiA) gene in Salmonella enterica Typhimurium SL1344.
T4 432-615 Sentence denotes A C-terminal truncated form of chiA lacking a putative chitin-binding domain was amplified by PCR, cloned and expressed in Escherichia coli BL21 (DE3) with an N-terminal (His)(6) tag.
T5 616-900 Sentence denotes The purified enzyme hydrolyzes 4-nitrophenyl N,N'-diacetyl-β-D-chitobioside, 4-nitrophenyl β-D-N,N',N″-triacetylchitotriose and carboxymethyl chitin Remazol Brilliant Violet but does not act on 4-nitrophenyl N-acetyl-β-D-glucosaminide, peptidoglycan or 4-nitrophenyl β-D-cellobioside.
T6 901-1103 Sentence denotes Enzyme activity was also characterized by directly monitoring product formation using (1)H-nuclear magnetic resonance which showed that chitin is a substrate with the release of N,N'-diacetylchitobiose.
T7 1104-1235 Sentence denotes Hydrolysis occurs with the retention of configuration and the enzyme acts on only the β-anomers of chitooligosaccharide substrates.
T8 1236-1440 Sentence denotes The enzyme also released N-acetyllactosamine disaccharide from Galβ1 → 4GlcNAcβ-O-(CH(2))(8)CONH(CH(2))(2)NHCO-tetramethylrhodamine, a model substrate for LacNAc terminating glycoproteins and glycolipids.
T1 0-145 Sentence denotes Characterization of a novel Salmonella Typhimurium chitinase which hydrolyzes chitin, chitooligosaccharides and an N-acetyllactosamine conjugate.
T2 146-260 Sentence denotes Salmonella contain genes annotated as chitinases; however, their chitinolytic activities have never been verified.
T3 261-431 Sentence denotes We now demonstrate such an activity for a chitinase assigned to glycoside hydrolase family 18 encoded by the SL0018 (chiA) gene in Salmonella enterica Typhimurium SL1344.
T4 432-615 Sentence denotes A C-terminal truncated form of chiA lacking a putative chitin-binding domain was amplified by PCR, cloned and expressed in Escherichia coli BL21 (DE3) with an N-terminal (His)(6) tag.
T5 616-900 Sentence denotes The purified enzyme hydrolyzes 4-nitrophenyl N,N'-diacetyl-β-D-chitobioside, 4-nitrophenyl β-D-N,N',N″-triacetylchitotriose and carboxymethyl chitin Remazol Brilliant Violet but does not act on 4-nitrophenyl N-acetyl-β-D-glucosaminide, peptidoglycan or 4-nitrophenyl β-D-cellobioside.
T6 901-1103 Sentence denotes Enzyme activity was also characterized by directly monitoring product formation using (1)H-nuclear magnetic resonance which showed that chitin is a substrate with the release of N,N'-diacetylchitobiose.
T7 1104-1235 Sentence denotes Hydrolysis occurs with the retention of configuration and the enzyme acts on only the β-anomers of chitooligosaccharide substrates.
T8 1236-1440 Sentence denotes The enzyme also released N-acetyllactosamine disaccharide from Galβ1 → 4GlcNAcβ-O-(CH(2))(8)CONH(CH(2))(2)NHCO-tetramethylrhodamine, a model substrate for LacNAc terminating glycoproteins and glycolipids.

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 28-50 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC249,LEC700 denotes Salmonella Typhimurium
_T2 392-411 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC743 denotes Salmonella enterica
_T3 392-423 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC249,LEC700 denotes Salmonella enterica Typhimurium
_T4 555-571 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 denotes Escherichia coli
_T5 555-571 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 denotes Escherichia coli
_T6 555-571 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 denotes Escherichia coli
_T7 555-571 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 denotes Escherichia coli
_T8 555-571 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 denotes Escherichia coli
_T9 555-571 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 denotes Escherichia coli
_T10 555-571 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 denotes Escherichia coli
_T11 555-571 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 denotes Escherichia coli
_T12 555-576 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 denotes Escherichia coli BL21
_T13 555-576 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 denotes Escherichia coli BL21
_T14 555-576 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC263,LEC665 denotes Escherichia coli BL21
_T15 555-576 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC324 denotes Escherichia coli BL21

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T18 1410-1423 FMAID:62925 denotes glycoproteins
_T1 86-107 FMAID:196731 denotes chitooligosaccharides
_T2 86-107 FMAID:82742 denotes chitooligosaccharides
_T3 115-134 FMAID:196780 denotes N-acetyllactosamine
_T4 115-134 FMAID:82786 denotes N-acetyllactosamine
_T5 165-170 FMAID:198663 denotes genes
_T6 384-388 FMAID:198663 denotes gene
_T7 837-850 FMAID:82797 denotes glucosaminide
_T8 837-850 FMAID:196792 denotes glucosaminide
_T9 852-865 FMAID:82783 denotes peptidoglycan
_T10 852-865 FMAID:196777 denotes peptidoglycan
_T11 1203-1223 FMAID:196731 denotes chitooligosaccharide
_T12 1203-1223 FMAID:82742 denotes chitooligosaccharide
_T13 1261-1280 FMAID:82786 denotes N-acetyllactosamine
_T14 1261-1280 FMAID:196780 denotes N-acetyllactosamine
_T15 1281-1293 FMAID:196733 denotes disaccharide
_T16 1281-1293 FMAID:82744 denotes disaccharide
_T17 1410-1423 FMAID:167256 denotes glycoproteins
_T19 1428-1439 FMAID:196773 denotes glycolipids
_T20 1428-1439 FMAID:82780 denotes glycolipids

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 28-38 http://purl.bioontology.org/ontology/NCBITAXON/590 denotes Salmonella
T2 146-156 http://purl.bioontology.org/ontology/NCBITAXON/590 denotes Salmonella
T3 240-245 http://purl.bioontology.org/ontology/NCBITAXON/617048 denotes never
T4 378-382 http://purl.bioontology.org/ontology/NCBITAXON/281823 denotes chiA
T5 392-402 http://purl.bioontology.org/ontology/NCBITAXON/590 denotes Salmonella
T6 463-467 http://purl.bioontology.org/ontology/NCBITAXON/281823 denotes chiA
T7 555-566 http://purl.bioontology.org/ontology/NCBITAXON/561 denotes Escherichia

GO-BP

Id Subject Object Predicate Lexical cue
T1 135-144 http://purl.obolibrary.org/obo/GO_0000746 denotes conjugate
T2 288-312 http://purl.obolibrary.org/obo/GO_0004568 denotes activity for a chitinase
T3 901-916 http://purl.obolibrary.org/obo/GO_0003824 denotes Enzyme activity
T4 971-980 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T5 1131-1140 http://purl.obolibrary.org/obo/GO_0051235 denotes retention

GO-MF

Id Subject Object Predicate Lexical cue
T1 487-501 http://purl.obolibrary.org/obo/GO_0008061 denotes chitin-binding
T2 494-501 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T3 494-501 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T4 494-501 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T5 494-501 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T1 852-865 http://purl.obolibrary.org/obo/GO_0009274 denotes peptidoglycan

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 852-865 http://rdf.glycoinfo.org/glycan/G00023MO denotes peptidoglycan

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 78-84 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T2 487-493 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T3 758-764 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T4 1037-1043 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T5 1391-1397 Glycan denotes LacNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G66213AR

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 28-38 OrganismTaxon denotes Salmonella 590
T2 146-156 OrganismTaxon denotes Salmonella 590
T3 392-411 OrganismTaxon denotes Salmonella enterica 28901
T4 555-571 OrganismTaxon denotes Escherichia coli 562

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-145 Sentence denotes Characterization of a novel Salmonella Typhimurium chitinase which hydrolyzes chitin, chitooligosaccharides and an N-acetyllactosamine conjugate.
TextSentencer_T2 146-260 Sentence denotes Salmonella contain genes annotated as chitinases; however, their chitinolytic activities have never been verified.
TextSentencer_T3 261-431 Sentence denotes We now demonstrate such an activity for a chitinase assigned to glycoside hydrolase family 18 encoded by the SL0018 (chiA) gene in Salmonella enterica Typhimurium SL1344.
TextSentencer_T4 432-615 Sentence denotes A C-terminal truncated form of chiA lacking a putative chitin-binding domain was amplified by PCR, cloned and expressed in Escherichia coli BL21 (DE3) with an N-terminal (His)(6) tag.
TextSentencer_T5 616-900 Sentence denotes The purified enzyme hydrolyzes 4-nitrophenyl N,N'-diacetyl-β-D-chitobioside, 4-nitrophenyl β-D-N,N',N″-triacetylchitotriose and carboxymethyl chitin Remazol Brilliant Violet but does not act on 4-nitrophenyl N-acetyl-β-D-glucosaminide, peptidoglycan or 4-nitrophenyl β-D-cellobioside.
TextSentencer_T6 901-1103 Sentence denotes Enzyme activity was also characterized by directly monitoring product formation using (1)H-nuclear magnetic resonance which showed that chitin is a substrate with the release of N,N'-diacetylchitobiose.
TextSentencer_T7 1104-1235 Sentence denotes Hydrolysis occurs with the retention of configuration and the enzyme acts on only the β-anomers of chitooligosaccharide substrates.
TextSentencer_T8 1236-1440 Sentence denotes The enzyme also released N-acetyllactosamine disaccharide from Galβ1 → 4GlcNAcβ-O-(CH(2))(8)CONH(CH(2))(2)NHCO-tetramethylrhodamine, a model substrate for LacNAc terminating glycoproteins and glycolipids.
T1 0-145 Sentence denotes Characterization of a novel Salmonella Typhimurium chitinase which hydrolyzes chitin, chitooligosaccharides and an N-acetyllactosamine conjugate.
T2 146-260 Sentence denotes Salmonella contain genes annotated as chitinases; however, their chitinolytic activities have never been verified.
T3 261-431 Sentence denotes We now demonstrate such an activity for a chitinase assigned to glycoside hydrolase family 18 encoded by the SL0018 (chiA) gene in Salmonella enterica Typhimurium SL1344.
T4 432-615 Sentence denotes A C-terminal truncated form of chiA lacking a putative chitin-binding domain was amplified by PCR, cloned and expressed in Escherichia coli BL21 (DE3) with an N-terminal (His)(6) tag.
T5 616-900 Sentence denotes The purified enzyme hydrolyzes 4-nitrophenyl N,N'-diacetyl-β-D-chitobioside, 4-nitrophenyl β-D-N,N',N″-triacetylchitotriose and carboxymethyl chitin Remazol Brilliant Violet but does not act on 4-nitrophenyl N-acetyl-β-D-glucosaminide, peptidoglycan or 4-nitrophenyl β-D-cellobioside.
T6 901-1103 Sentence denotes Enzyme activity was also characterized by directly monitoring product formation using (1)H-nuclear magnetic resonance which showed that chitin is a substrate with the release of N,N'-diacetylchitobiose.
T7 1104-1235 Sentence denotes Hydrolysis occurs with the retention of configuration and the enzyme acts on only the β-anomers of chitooligosaccharide substrates.
T8 1236-1440 Sentence denotes The enzyme also released N-acetyllactosamine disaccharide from Galβ1 → 4GlcNAcβ-O-(CH(2))(8)CONH(CH(2))(2)NHCO-tetramethylrhodamine, a model substrate for LacNAc terminating glycoproteins and glycolipids.
T1 0-145 Sentence denotes Characterization of a novel Salmonella Typhimurium chitinase which hydrolyzes chitin, chitooligosaccharides and an N-acetyllactosamine conjugate.
T2 146-260 Sentence denotes Salmonella contain genes annotated as chitinases; however, their chitinolytic activities have never been verified.
T3 261-431 Sentence denotes We now demonstrate such an activity for a chitinase assigned to glycoside hydrolase family 18 encoded by the SL0018 (chiA) gene in Salmonella enterica Typhimurium SL1344.
T4 432-615 Sentence denotes A C-terminal truncated form of chiA lacking a putative chitin-binding domain was amplified by PCR, cloned and expressed in Escherichia coli BL21 (DE3) with an N-terminal (His)(6) tag.
T5 616-900 Sentence denotes The purified enzyme hydrolyzes 4-nitrophenyl N,N'-diacetyl-β-D-chitobioside, 4-nitrophenyl β-D-N,N',N″-triacetylchitotriose and carboxymethyl chitin Remazol Brilliant Violet but does not act on 4-nitrophenyl N-acetyl-β-D-glucosaminide, peptidoglycan or 4-nitrophenyl β-D-cellobioside.
T6 901-1103 Sentence denotes Enzyme activity was also characterized by directly monitoring product formation using (1)H-nuclear magnetic resonance which showed that chitin is a substrate with the release of N,N'-diacetylchitobiose.
T7 1104-1235 Sentence denotes Hydrolysis occurs with the retention of configuration and the enzyme acts on only the β-anomers of chitooligosaccharide substrates.
T8 1236-1440 Sentence denotes The enzyme also released N-acetyllactosamine disaccharide from Galβ1 → 4GlcNAcβ-O-(CH(2))(8)CONH(CH(2))(2)NHCO-tetramethylrhodamine, a model substrate for LacNAc terminating glycoproteins and glycolipids.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-145 Sentence denotes Characterization of a novel Salmonella Typhimurium chitinase which hydrolyzes chitin, chitooligosaccharides and an N-acetyllactosamine conjugate.
T2 146-260 Sentence denotes Salmonella contain genes annotated as chitinases; however, their chitinolytic activities have never been verified.
T3 261-431 Sentence denotes We now demonstrate such an activity for a chitinase assigned to glycoside hydrolase family 18 encoded by the SL0018 (chiA) gene in Salmonella enterica Typhimurium SL1344.
T4 432-615 Sentence denotes A C-terminal truncated form of chiA lacking a putative chitin-binding domain was amplified by PCR, cloned and expressed in Escherichia coli BL21 (DE3) with an N-terminal (His)(6) tag.
T5 616-900 Sentence denotes The purified enzyme hydrolyzes 4-nitrophenyl N,N'-diacetyl-β-D-chitobioside, 4-nitrophenyl β-D-N,N',N″-triacetylchitotriose and carboxymethyl chitin Remazol Brilliant Violet but does not act on 4-nitrophenyl N-acetyl-β-D-glucosaminide, peptidoglycan or 4-nitrophenyl β-D-cellobioside.
T6 901-1103 Sentence denotes Enzyme activity was also characterized by directly monitoring product formation using (1)H-nuclear magnetic resonance which showed that chitin is a substrate with the release of N,N'-diacetylchitobiose.
T7 1104-1235 Sentence denotes Hydrolysis occurs with the retention of configuration and the enzyme acts on only the β-anomers of chitooligosaccharide substrates.
T8 1236-1440 Sentence denotes The enzyme also released N-acetyllactosamine disaccharide from Galβ1 → 4GlcNAcβ-O-(CH(2))(8)CONH(CH(2))(2)NHCO-tetramethylrhodamine, a model substrate for LacNAc terminating glycoproteins and glycolipids.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 78-84 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T2 487-493 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T3 758-764 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T4 1037-1043 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T5 1391-1397 Glycan denotes LacNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G66213AR

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 28-38 OrganismTaxon denotes Salmonella 590
T2 146-156 OrganismTaxon denotes Salmonella 590
T3 392-411 OrganismTaxon denotes Salmonella enterica 28901
T4 555-571 OrganismTaxon denotes Escherichia coli 562