PubMed:21057870
Annnotations
GlyCosmos600-Glycan-Motif-Structure
{"project":"GlyCosmos600-Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":55,"end":71},"obj":"https://glytoucan.org/Structures/Glycans/G84224TW"},{"id":"T2","span":{"begin":55,"end":71},"obj":"https://glytoucan.org/Structures/Glycans/G74621DY"},{"id":"T3","span":{"begin":55,"end":71},"obj":"https://glytoucan.org/Structures/Glycans/G20420WT"},{"id":"T4","span":{"begin":208,"end":224},"obj":"https://glytoucan.org/Structures/Glycans/G84224TW"},{"id":"T5","span":{"begin":208,"end":224},"obj":"https://glytoucan.org/Structures/Glycans/G74621DY"},{"id":"T6","span":{"begin":208,"end":224},"obj":"https://glytoucan.org/Structures/Glycans/G20420WT"},{"id":"T7","span":{"begin":1284,"end":1300},"obj":"https://glytoucan.org/Structures/Glycans/G71142DF"},{"id":"T8","span":{"begin":1552,"end":1555},"obj":"https://glytoucan.org/Structures/Glycans/G91237TK"},{"id":"T9","span":{"begin":1552,"end":1555},"obj":"https://glytoucan.org/Structures/Glycans/G56516VH"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos600-CLO
{"project":"GlyCosmos600-CLO","denotations":[{"id":"T1","span":{"begin":352,"end":378},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T2","span":{"begin":380,"end":383},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T3","span":{"begin":385,"end":390},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T4","span":{"begin":595,"end":604},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T5","span":{"begin":595,"end":598},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T6","span":{"begin":674,"end":683},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T7","span":{"begin":674,"end":677},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T8","span":{"begin":756,"end":765},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T9","span":{"begin":756,"end":759},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T10","span":{"begin":1014,"end":1023},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T11","span":{"begin":1014,"end":1017},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T12","span":{"begin":1222,"end":1231},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T13","span":{"begin":1222,"end":1225},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T14","span":{"begin":1247,"end":1251},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T15","span":{"begin":1411,"end":1420},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T16","span":{"begin":1411,"end":1414},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T17","span":{"begin":1481,"end":1490},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T18","span":{"begin":1481,"end":1484},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T19","span":{"begin":1584,"end":1593},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T20","span":{"begin":1584,"end":1587},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T21","span":{"begin":1667,"end":1676},"obj":"http://purl.obolibrary.org/obo/CLO_0053348"},{"id":"T22","span":{"begin":1667,"end":1670},"obj":"http://purl.obolibrary.org/obo/CL_0000057"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos6-Glycan-Motif-Image
{"project":"GlyCosmos6-Glycan-Motif-Image","denotations":[{"id":"T1","span":{"begin":55,"end":71},"obj":"Glycan_Motif"},{"id":"T4","span":{"begin":208,"end":224},"obj":"Glycan_Motif"},{"id":"T7","span":{"begin":1284,"end":1300},"obj":"Glycan_Motif"},{"id":"T8","span":{"begin":1552,"end":1555},"obj":"Glycan_Motif"}],"attributes":[{"id":"A1","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G84224TW"},{"id":"A2","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G74621DY"},{"id":"A3","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G20420WT"},{"id":"A4","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G84224TW"},{"id":"A5","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G74621DY"},{"id":"A6","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G20420WT"},{"id":"A7","pred":"image","subj":"T7","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G71142DF"},{"id":"A8","pred":"image","subj":"T8","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G91237TK"},{"id":"A9","pred":"image","subj":"T8","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56516VH"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
Glycosmos6-GlycoEpitope
{"project":"Glycosmos6-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":55,"end":71},"obj":"http://www.glycoepitope.jp/epitopes/EP0078"},{"id":"T2","span":{"begin":208,"end":224},"obj":"http://www.glycoepitope.jp/epitopes/EP0078"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos6-Glycan-Motif-Structure
{"project":"GlyCosmos6-Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":55,"end":71},"obj":"https://glytoucan.org/Structures/Glycans/G20420WT"},{"id":"T2","span":{"begin":55,"end":71},"obj":"https://glytoucan.org/Structures/Glycans/G74621DY"},{"id":"T3","span":{"begin":55,"end":71},"obj":"https://glytoucan.org/Structures/Glycans/G84224TW"},{"id":"T4","span":{"begin":208,"end":224},"obj":"https://glytoucan.org/Structures/Glycans/G20420WT"},{"id":"T5","span":{"begin":208,"end":224},"obj":"https://glytoucan.org/Structures/Glycans/G74621DY"},{"id":"T6","span":{"begin":208,"end":224},"obj":"https://glytoucan.org/Structures/Glycans/G84224TW"},{"id":"T7","span":{"begin":1284,"end":1300},"obj":"https://glytoucan.org/Structures/Glycans/G71142DF"},{"id":"T8","span":{"begin":1552,"end":1555},"obj":"https://glytoucan.org/Structures/Glycans/G56516VH"},{"id":"T9","span":{"begin":1552,"end":1555},"obj":"https://glytoucan.org/Structures/Glycans/G91237TK"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
sentences
{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":85},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":86,"end":255},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":256,"end":431},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":432,"end":749},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":750,"end":812},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":813,"end":1024},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":1025,"end":1232},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":1233,"end":1491},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":1492,"end":1677},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":1678,"end":1762},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":85},"obj":"Sentence"},{"id":"T2","span":{"begin":86,"end":255},"obj":"Sentence"},{"id":"T3","span":{"begin":256,"end":431},"obj":"Sentence"},{"id":"T4","span":{"begin":432,"end":749},"obj":"Sentence"},{"id":"T5","span":{"begin":750,"end":812},"obj":"Sentence"},{"id":"T6","span":{"begin":813,"end":1024},"obj":"Sentence"},{"id":"T7","span":{"begin":1025,"end":1232},"obj":"Sentence"},{"id":"T8","span":{"begin":1233,"end":1491},"obj":"Sentence"},{"id":"T9","span":{"begin":1492,"end":1677},"obj":"Sentence"},{"id":"T10","span":{"begin":1678,"end":1762},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
Allie
{"project":"Allie","denotations":[{"id":"SS1_21057870_1_0","span":{"begin":92,"end":119},"obj":"expanded"},{"id":"SS2_21057870_1_0","span":{"begin":121,"end":131},"obj":"abbr"},{"id":"SS1_21057870_1_1","span":{"begin":208,"end":224},"obj":"expanded"},{"id":"SS2_21057870_1_1","span":{"begin":226,"end":233},"obj":"abbr"},{"id":"SS1_21057870_2_0","span":{"begin":352,"end":378},"obj":"expanded"},{"id":"SS2_21057870_2_0","span":{"begin":380,"end":383},"obj":"abbr"},{"id":"SS1_21057870_2_1","span":{"begin":396,"end":408},"obj":"expanded"},{"id":"SS2_21057870_2_1","span":{"begin":410,"end":417},"obj":"abbr"}],"relations":[{"id":"AE1_21057870_1_0","pred":"abbreviatedTo","subj":"SS1_21057870_1_0","obj":"SS2_21057870_1_0"},{"id":"AE1_21057870_1_1","pred":"abbreviatedTo","subj":"SS1_21057870_1_1","obj":"SS2_21057870_1_1"},{"id":"AE1_21057870_2_0","pred":"abbreviatedTo","subj":"SS1_21057870_2_0","obj":"SS2_21057870_2_0"},{"id":"AE1_21057870_2_1","pred":"abbreviatedTo","subj":"SS1_21057870_2_1","obj":"SS2_21057870_2_1"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos600-GlycoEpitope
{"project":"GlyCosmos600-GlycoEpitope","denotations":[{"id":"PD-GlycoEpitope-B_T1","span":{"begin":55,"end":71},"obj":"http://www.glycoepitope.jp/epitopes/EP0078"},{"id":"PD-GlycoEpitope-B_T2","span":{"begin":208,"end":224},"obj":"http://www.glycoepitope.jp/epitopes/EP0078"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos600-FMA
{"project":"GlyCosmos600-FMA","denotations":[{"id":"T1","span":{"begin":127,"end":131},"obj":"Body_part"},{"id":"T2","span":{"begin":368,"end":378},"obj":"Body_part"},{"id":"T3","span":{"begin":385,"end":390},"obj":"Body_part"},{"id":"T4","span":{"begin":402,"end":406},"obj":"Body_part"},{"id":"T5","span":{"begin":475,"end":479},"obj":"Body_part"},{"id":"T6","span":{"begin":533,"end":537},"obj":"Body_part"},{"id":"T7","span":{"begin":540,"end":544},"obj":"Body_part"},{"id":"T8","span":{"begin":599,"end":604},"obj":"Body_part"},{"id":"T9","span":{"begin":678,"end":683},"obj":"Body_part"},{"id":"T10","span":{"begin":738,"end":742},"obj":"Body_part"},{"id":"T11","span":{"begin":760,"end":765},"obj":"Body_part"},{"id":"T12","span":{"begin":824,"end":828},"obj":"Body_part"},{"id":"T13","span":{"begin":1018,"end":1023},"obj":"Body_part"},{"id":"T14","span":{"begin":1137,"end":1150},"obj":"Body_part"},{"id":"T15","span":{"begin":1226,"end":1231},"obj":"Body_part"},{"id":"T16","span":{"begin":1247,"end":1251},"obj":"Body_part"},{"id":"T17","span":{"begin":1284,"end":1300},"obj":"Body_part"},{"id":"T18","span":{"begin":1415,"end":1420},"obj":"Body_part"},{"id":"T19","span":{"begin":1485,"end":1490},"obj":"Body_part"},{"id":"T20","span":{"begin":1588,"end":1593},"obj":"Body_part"},{"id":"T21","span":{"begin":1671,"end":1676},"obj":"Body_part"},{"id":"T22","span":{"begin":1719,"end":1723},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma62820"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma62820"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma62820"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma62820"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma62820"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma62820"},{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma82820"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A21","pred":"fma_id","subj":"T21","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma62820"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos600-GlycoGenes2
{"project":"GlyCosmos600-GlycoGenes2","denotations":[{"id":"T1","span":{"begin":22,"end":51},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T2","span":{"begin":120,"end":134},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T3","span":{"begin":127,"end":131},"obj":"https://acgg.asia/db/ggdb/info/gg184"},{"id":"T4","span":{"begin":396,"end":408},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T5","span":{"begin":402,"end":406},"obj":"https://acgg.asia/db/ggdb/info/gg184"},{"id":"T6","span":{"begin":410,"end":417},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T7","span":{"begin":469,"end":484},"obj":"https://acgg.asia/db/ggdb/info/gg082"},{"id":"T8","span":{"begin":469,"end":484},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T9","span":{"begin":469,"end":484},"obj":"https://acgg.asia/db/ggdb/info/gg080"},{"id":"T10","span":{"begin":469,"end":484},"obj":"https://acgg.asia/db/ggdb/info/gg079"},{"id":"T11","span":{"begin":469,"end":484},"obj":"https://acgg.asia/db/ggdb/info/gg078"},{"id":"T12","span":{"begin":469,"end":484},"obj":"https://acgg.asia/db/ggdb/info/gg077"},{"id":"T13","span":{"begin":475,"end":479},"obj":"https://acgg.asia/db/ggdb/info/gg184"},{"id":"T14","span":{"begin":527,"end":539},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T15","span":{"begin":533,"end":537},"obj":"https://acgg.asia/db/ggdb/info/gg184"},{"id":"T16","span":{"begin":548,"end":555},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T17","span":{"begin":570,"end":577},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T18","span":{"begin":650,"end":657},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T19","span":{"begin":738,"end":742},"obj":"https://acgg.asia/db/ggdb/info/gg184"},{"id":"T20","span":{"begin":824,"end":828},"obj":"https://acgg.asia/db/ggdb/info/gg184"},{"id":"T21","span":{"begin":949,"end":956},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T22","span":{"begin":967,"end":974},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T23","span":{"begin":989,"end":996},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T24","span":{"begin":1157,"end":1164},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T25","span":{"begin":1175,"end":1182},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T26","span":{"begin":1197,"end":1204},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T27","span":{"begin":1364,"end":1371},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T28","span":{"begin":1386,"end":1393},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T29","span":{"begin":1457,"end":1464},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T30","span":{"begin":1552,"end":1555},"obj":"https://acgg.asia/db/ggdb/info/gg052"},{"id":"T31","span":{"begin":1559,"end":1566},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T32","span":{"begin":1643,"end":1650},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T33","span":{"begin":1713,"end":1725},"obj":"https://acgg.asia/db/ggdb/info/gg081"},{"id":"T34","span":{"begin":1719,"end":1723},"obj":"https://acgg.asia/db/ggdb/info/gg184"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
glycosmos-test-glycan-structure
{"project":"glycosmos-test-glycan-structure","denotations":[{"id":"PD-GlycanStructures-B_T1","span":{"begin":55,"end":71},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa19/trivialname"},{"id":"PD-GlycanStructures-B_T2","span":{"begin":208,"end":224},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa19/trivialname"},{"id":"PD-GlycanStructures-B_T3","span":{"begin":226,"end":229},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa26/trivialname"},{"id":"PD-GlycanStructures-B_T4","span":{"begin":1335,"end":1338},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa26/trivialname"},{"id":"PD-GlycanStructures-B_T5","span":{"begin":1525,"end":1528},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa26/trivialname"},{"id":"PD-GlycanStructures-B_T6","span":{"begin":1741,"end":1744},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa26/trivialname"},{"id":"PD-GlycanStructures-B_T7","span":{"begin":1552,"end":1555},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa15/trivialname"},{"id":"PD-GlycanStructures-B_T8","span":{"begin":1552,"end":1555},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa50/trivialname"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
glycosmos-test-structure-v1
{"project":"glycosmos-test-structure-v1","denotations":[{"id":"PD-GlycanStructures-B_T1","span":{"begin":55,"end":71},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa19/trivialname"},{"id":"PD-GlycanStructures-B_T2","span":{"begin":208,"end":224},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa19/trivialname"},{"id":"PD-GlycanStructures-B_T3","span":{"begin":226,"end":229},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa26/trivialname"},{"id":"PD-GlycanStructures-B_T4","span":{"begin":1335,"end":1338},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa26/trivialname"},{"id":"PD-GlycanStructures-B_T5","span":{"begin":1525,"end":1528},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa26/trivialname"},{"id":"PD-GlycanStructures-B_T7","span":{"begin":1552,"end":1555},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa15/trivialname"},{"id":"PD-GlycanStructures-B_T8","span":{"begin":1552,"end":1555},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa50/trivialname"},{"id":"PD-GlycanStructures-B_T6","span":{"begin":1741,"end":1744},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa26/trivialname"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
pubmed-enju-pas
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g1Of","subj":"EnjuParser_T268","obj":"EnjuParser_T269"},{"id":"EnjuParser_R270","pred":"arg2Of","subj":"EnjuParser_T272","obj":"EnjuParser_T269"},{"id":"EnjuParser_R271","pred":"arg1Of","subj":"EnjuParser_T272","obj":"EnjuParser_T270"},{"id":"EnjuParser_R272","pred":"arg1Of","subj":"EnjuParser_T272","obj":"EnjuParser_T271"},{"id":"EnjuParser_R273","pred":"arg1Of","subj":"EnjuParser_T266","obj":"EnjuParser_T273"},{"id":"EnjuParser_R274","pred":"arg2Of","subj":"EnjuParser_T280","obj":"EnjuParser_T273"},{"id":"EnjuParser_R275","pred":"arg1Of","subj":"EnjuParser_T280","obj":"EnjuParser_T274"},{"id":"EnjuParser_R276","pred":"arg1Of","subj":"EnjuParser_T280","obj":"EnjuParser_T275"},{"id":"EnjuParser_R277","pred":"arg2Of","subj":"EnjuParser_T276","obj":"EnjuParser_T275"},{"id":"EnjuParser_R278","pred":"arg3Of","subj":"EnjuParser_T277","obj":"EnjuParser_T275"},{"id":"EnjuParser_R279","pred":"arg1Of","subj":"EnjuParser_T280","obj":"EnjuParser_T278"},{"id":"EnjuParser_R280","pred":"arg1Of","subj":"EnjuParser_T280","obj":"EnjuParser_T279"},{"id":"EnjuParser_R281","pred":"arg1Of","subj":"EnjuParser_T266","obj":"EnjuParser_T281"},{"id":"EnjuParser_R282","pred":"arg2Of","subj":"EnjuParser_T294","obj":"EnjuParser_T281"},{"id":"EnjuParser_R283","pred":"arg1Of","subj":"EnjuParser_T281","obj":"EnjuParser_T282"},{"id":"EnjuParser_R284","pred":"arg1Of","subj":"EnjuParser_T281","obj":"EnjuParser_T283"},{"id":"EnjuParser_R285","pred":"arg2Of","subj":"EnjuParser_T284","obj":"EnjuParser_T283"},{"id":"EnjuParser_R286","pred":"arg1Of","subj":"EnjuParser_T284","obj":"EnjuParser_T285"},{"id":"EnjuParser_R287","pred":"arg2Of","subj":"EnjuParser_T286","obj":"EnjuParser_T285"},{"id":"EnjuParser_R288","pred":"arg1Of","subj":"EnjuParser_T286","obj":"EnjuParser_T287"},{"id":"EnjuParser_R289","pred":"arg2Of","subj":"EnjuParser_T288","obj":"EnjuParser_T287"},{"id":"EnjuParser_R290","pred":"arg1Of","subj":"EnjuParser_T288","obj":"EnjuParser_T289"},{"id":"EnjuParser_R291","pred":"arg2Of","subj":"EnjuParser_T290","obj":"EnjuParser_T289"},{"id":"EnjuParser_R292","pred":"arg3Of","subj":"EnjuParser_T291","obj":"EnjuParser_T289"},{"id":"EnjuParser_R293","pred":"arg1Of","subj":"EnjuParser_T294","obj":"EnjuParser_T292"},{"id":"EnjuParser_R294","pred":"arg1Of","subj":"EnjuParser_T294","obj":"EnjuParser_T293"},{"id":"EnjuParser_R295","pred":"arg1Of","subj":"EnjuParser_T296","obj":"EnjuParser_T295"},{"id":"EnjuParser_R296","pred":"arg1Of","subj":"EnjuParser_T296","obj":"EnjuParser_T297"},{"id":"EnjuParser_R297","pred":"arg2Of","subj":"EnjuParser_T303","obj":"EnjuParser_T297"},{"id":"EnjuParser_R298","pred":"arg1Of","subj":"EnjuParser_T303","obj":"EnjuParser_T298"},{"id":"EnjuParser_R299","pred":"arg1Of","subj":"EnjuParser_T301","obj":"EnjuParser_T299"},{"id":"EnjuParser_R300","pred":"arg1Of","subj":"EnjuParser_T301","obj":"EnjuParser_T300"},{"id":"EnjuParser_R301","pred":"arg1Of","subj":"EnjuParser_T301","obj":"EnjuParser_T302"},{"id":"EnjuParser_R302","pred":"arg2Of","subj":"EnjuParser_T303","obj":"EnjuParser_T302"},{"id":"EnjuParser_R303","pred":"arg2Of","subj":"EnjuParser_T301","obj":"EnjuParser_T303"},{"id":"EnjuParser_R304","pred":"arg1Of","subj":"EnjuParser_T303","obj":"EnjuParser_T304"},{"id":"EnjuParser_R305","pred":"arg2Of","subj":"EnjuParser_T306","obj":"EnjuParser_T304"},{"id":"EnjuParser_R306","pred":"arg1Of","subj":"EnjuParser_T306","obj":"EnjuParser_T305"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
Glycan-GlyCosmos
{"project":"Glycan-GlyCosmos","denotations":[{"id":"T1","span":{"begin":55,"end":71},"obj":"Glycan"},{"id":"T2","span":{"begin":208,"end":224},"obj":"Glycan"},{"id":"T3","span":{"begin":226,"end":229},"obj":"Glycan"},{"id":"T4","span":{"begin":1335,"end":1338},"obj":"Glycan"},{"id":"T5","span":{"begin":1525,"end":1528},"obj":"Glycan"},{"id":"T6","span":{"begin":1552,"end":1555},"obj":"Glycan"},{"id":"T7","span":{"begin":1741,"end":1744},"obj":"Glycan"}],"attributes":[{"id":"A1","pred":"glycosmos_id","subj":"T1","obj":"https://glycosmos.org/glycans/show/G84224TW"},{"id":"A8","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A2","pred":"glycosmos_id","subj":"T2","obj":"https://glycosmos.org/glycans/show/G84224TW"},{"id":"A9","pred":"image","subj":"T2","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A3","pred":"glycosmos_id","subj":"T3","obj":"https://glycosmos.org/glycans/show/ G84224TW"},{"id":"A10","pred":"image","subj":"T3","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A4","pred":"glycosmos_id","subj":"T4","obj":"https://glycosmos.org/glycans/show/ G84224TW"},{"id":"A11","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A5","pred":"glycosmos_id","subj":"T5","obj":"https://glycosmos.org/glycans/show/ G84224TW"},{"id":"A12","pred":"image","subj":"T5","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A6","pred":"glycosmos_id","subj":"T6","obj":"https://glycosmos.org/glycans/show/G91237TK"},{"id":"A13","pred":"image","subj":"T6","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G91237TK"},{"id":"A7","pred":"glycosmos_id","subj":"T7","obj":"https://glycosmos.org/glycans/show/ G84224TW"},{"id":"A14","pred":"image","subj":"T7","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos-GlycoEpitope
{"project":"GlyCosmos-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":55,"end":71},"obj":"http://purl.jp/bio/12/glyco/glycan#Glycan_epitope"},{"id":"T2","span":{"begin":208,"end":224},"obj":"http://purl.jp/bio/12/glyco/glycan#Glycan_epitope"}],"attributes":[{"id":"A1","pred":"glycoepitope_id","subj":"T1","obj":"http://www.glycoepitope.jp/epitopes/EP0078"},{"id":"A2","pred":"glycoepitope_id","subj":"T2","obj":"http://www.glycoepitope.jp/epitopes/EP0078"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos15-NCBITAXON
{"project":"GlyCosmos15-NCBITAXON","denotations":[{"id":"T1","span":{"begin":86,"end":91},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":352,"end":357},"obj":"OrganismTaxon"},{"id":"T4","span":{"begin":426,"end":430},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"id":"A2","pred":"db_id","subj":"T2","obj":"10088"},{"id":"A3","pred":"db_id","subj":"T2","obj":"10090"},{"id":"A4","pred":"db_id","subj":"T4","obj":"10088"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos15-CL
{"project":"GlyCosmos15-CL","denotations":[{"id":"T1","span":{"begin":358,"end":378},"obj":"Cell"},{"id":"T2","span":{"begin":368,"end":378},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:2000042"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0000057"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos15-UBERON
{"project":"GlyCosmos15-UBERON","denotations":[{"id":"T1","span":{"begin":358,"end":378},"obj":"Body_part"},{"id":"T2","span":{"begin":1128,"end":1136},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_2000042"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/GO_0016020"},{"id":"A3","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000094"},{"id":"A4","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000158"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
sentences
{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":85},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":86,"end":255},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":256,"end":431},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":432,"end":749},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":750,"end":812},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":813,"end":1024},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":1025,"end":1232},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":1233,"end":1491},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":1492,"end":1677},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":1678,"end":1762},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":85},"obj":"Sentence"},{"id":"T2","span":{"begin":86,"end":255},"obj":"Sentence"},{"id":"T3","span":{"begin":256,"end":431},"obj":"Sentence"},{"id":"T4","span":{"begin":432,"end":749},"obj":"Sentence"},{"id":"T5","span":{"begin":750,"end":812},"obj":"Sentence"},{"id":"T6","span":{"begin":813,"end":1024},"obj":"Sentence"},{"id":"T7","span":{"begin":1025,"end":1232},"obj":"Sentence"},{"id":"T8","span":{"begin":1233,"end":1491},"obj":"Sentence"},{"id":"T9","span":{"begin":1492,"end":1677},"obj":"Sentence"},{"id":"T10","span":{"begin":1678,"end":1762},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos15-Sentences
{"project":"GlyCosmos15-Sentences","blocks":[{"id":"T1","span":{"begin":0,"end":85},"obj":"Sentence"},{"id":"T2","span":{"begin":86,"end":255},"obj":"Sentence"},{"id":"T3","span":{"begin":256,"end":431},"obj":"Sentence"},{"id":"T4","span":{"begin":432,"end":749},"obj":"Sentence"},{"id":"T5","span":{"begin":750,"end":812},"obj":"Sentence"},{"id":"T6","span":{"begin":813,"end":1024},"obj":"Sentence"},{"id":"T7","span":{"begin":1025,"end":1232},"obj":"Sentence"},{"id":"T8","span":{"begin":1233,"end":1491},"obj":"Sentence"},{"id":"T9","span":{"begin":1492,"end":1677},"obj":"Sentence"},{"id":"T10","span":{"begin":1678,"end":1762},"obj":"Sentence"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos15-Glycan
{"project":"GlyCosmos15-Glycan","denotations":[{"id":"T1","span":{"begin":55,"end":71},"obj":"Glycan"},{"id":"T2","span":{"begin":208,"end":224},"obj":"Glycan"},{"id":"T3","span":{"begin":226,"end":229},"obj":"Glycan"},{"id":"T4","span":{"begin":1335,"end":1338},"obj":"Glycan"},{"id":"T5","span":{"begin":1525,"end":1528},"obj":"Glycan"},{"id":"T6","span":{"begin":1552,"end":1555},"obj":"Glycan"},{"id":"T7","span":{"begin":1741,"end":1744},"obj":"Glycan"}],"attributes":[{"id":"A1","pred":"glycosmos_id","subj":"T1","obj":"https://glycosmos.org/glycans/show/G84224TW"},{"id":"A8","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A2","pred":"glycosmos_id","subj":"T2","obj":"https://glycosmos.org/glycans/show/G84224TW"},{"id":"A9","pred":"image","subj":"T2","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A3","pred":"glycosmos_id","subj":"T3","obj":"https://glycosmos.org/glycans/show/ G84224TW"},{"id":"A10","pred":"image","subj":"T3","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A4","pred":"glycosmos_id","subj":"T4","obj":"https://glycosmos.org/glycans/show/ G84224TW"},{"id":"A11","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A5","pred":"glycosmos_id","subj":"T5","obj":"https://glycosmos.org/glycans/show/ G84224TW"},{"id":"A12","pred":"image","subj":"T5","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"},{"id":"A6","pred":"glycosmos_id","subj":"T6","obj":"https://glycosmos.org/glycans/show/G91237TK"},{"id":"A13","pred":"image","subj":"T6","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G91237TK"},{"id":"A7","pred":"glycosmos_id","subj":"T7","obj":"https://glycosmos.org/glycans/show/ G84224TW"},{"id":"A14","pred":"image","subj":"T7","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
GlyCosmos15-GlycoEpitope
{"project":"GlyCosmos15-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":55,"end":71},"obj":"http://purl.jp/bio/12/glyco/glycan#Glycan_epitope"},{"id":"T2","span":{"begin":208,"end":224},"obj":"http://purl.jp/bio/12/glyco/glycan#Glycan_epitope"}],"attributes":[{"id":"A1","pred":"glycoepitope_id","subj":"T1","obj":"http://www.glycoepitope.jp/epitopes/EP0078"},{"id":"A2","pred":"glycoepitope_id","subj":"T2","obj":"http://www.glycoepitope.jp/epitopes/EP0078"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
NCBITAXON
{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":86,"end":91},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":352,"end":357},"obj":"OrganismTaxon"},{"id":"T4","span":{"begin":426,"end":430},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"id":"A2","pred":"db_id","subj":"T2","obj":"10088"},{"id":"A3","pred":"db_id","subj":"T2","obj":"10090"},{"id":"A4","pred":"db_id","subj":"T4","obj":"10088"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
Anatomy-UBERON
{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":358,"end":378},"obj":"Body_part"},{"id":"T2","span":{"begin":1128,"end":1136},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_2000042"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/GO_0016020"},{"id":"A3","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000094"},{"id":"A4","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000158"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}
CL-cell
{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":358,"end":378},"obj":"Cell"},{"id":"T2","span":{"begin":368,"end":378},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:2000042"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0000057"}],"text":"Involvement of murine β-1,4-galactosyltransferase V in lactosylceramide biosynthesis.\nHuman β-1,4-galactosyltransferase (β-1,4-GalT) V was shown to be involved in the biosynthesis of N-glycans, O-glycans and lactosylceramide (Lac-Cer) by in vitro studies. To determine its substrate specificity, enzymatic activity and its products were analyzed using mouse embryonic fibroblast (MEF) cells from β-1,4-GalT V (B4galt5)-mutant mice. Analysis of expression levels of the β-1,4-GalT I-VI genes revealed that the expression of the β-1,4-GalT V gene in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells are a half and null when compared to that of B4galt5 ( +/+ )-derived MEF cells without altering the expression levels of other β-1,4-GalT genes. These MEF cells showed no apparent difference in their growth. When β-1,4-GalT activities were determined towards GlcNAcβ-S-pNP, no significant difference in its specific activity was obtained among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. No significant differences were obtained in structures and amounts of N-glycans and lectin bindings to membrane glycoproteins among B4galt5 ( +/+ )-, B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells. However, when cell homogenates were incubated with glucosylceramide in the presence of UDP-[(3)H]Gal, Lac-Cer synthase activity in B4galt5 ( +/- ) - and B4galt5 ( -/- ) -derived MEF cells decreased to 41% and 11% of that of B4galt5 ( +/+ )-derived MEF cells. Consistent with this, amounts of Lac-Cer and its derivative GM3 in B4galt5 ( -/- ) -derived MEF cells decreased remarkably when compared with those of B4galt5 ( +/+ )-derived MEF cells. These results indicate that murine β-1,4-GalT V is involved in Lac-Cer biosynthesis."}