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PubMed:2104828 JSONTXT

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CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 390-394 Cell denotes Poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T3 422-433 Cell denotes cancer cell http://purl.obolibrary.org/obo/CL:0001064

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 129-142 Glycan_Motif denotes blood group A https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G58507AZ|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G17108EX
T3 328-341 Glycan_Motif denotes blood group A https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G58507AZ|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G17108EX
T5 472-481 Glycan_Motif denotes A antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G71832QJ
T6 1457-1467 Glycan_Motif denotes H antigens https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46868TY

sentences

Id Subject Object Predicate Lexical cue
T1 0-70 Sentence denotes Cloning and characterization of DNA complementary to human UDP-GalNAc:
T2 71-161 Sentence denotes Fuc alpha 1----2Gal alpha 1----3GalNAc transferase (histo-blood group A transferase) mRNA.
T3 162-389 Sentence denotes Based on the partial amino acid sequence, the cDNA encoding UDP-GalNAc:Fuc alpha 1----2Gal alpha 1----3GalNAc transferase, the specific primary gene product of histo-blood group A gene (A transferase), was cloned and sequenced.
T4 390-539 Sentence denotes Poly(A)+ RNA from human stomach cancer cell line MKN45, expressing high levels of A antigen, was used for construction of a lambda gt10 cDNA library.
T5 540-849 Sentence denotes Degenerate synthetic oligodeoxynucleotides were used for polymerase chain reactions to detect the presence of the sequence of interest in cDNA (presence test) and to identify the correct clones (identification test) after screening the library with a radiolabeled polymerase chain reaction amplified fragment.
T6 850-952 Sentence denotes Nucleotide sequence analysis revealed a coding region of 1062 base pairs encoding a protein of 41 kDa.
T7 953-1172 Sentence denotes Hydrophobicity plot analysis shows the existence of three domains: N-terminal short stretch, transmembranous hydrophobic region, and a long C-terminal domain (a feature common to all glycosyltransferases cloned so far).
T8 1173-1267 Sentence denotes Southern hybridization analysis has shown that this DNA does not represent a multigene family.
T9 1268-1361 Sentence denotes No restriction fragment length polymorphism was found to correlate with ABO blood group type.
T10 1362-1468 Sentence denotes Bands were detected in Northern hybridization of mRNAs from cell lines expressing A, B, AB, or H antigens.
T11 1469-1730 Sentence denotes These results suggest that sequences of ABO genes are essentially very similar (with minimal differences), and the inability of the O gene to encode A or B transferases is probably due to structural differences rather than A or B transferase expression failure.
T1 0-70 Sentence denotes Cloning and characterization of DNA complementary to human UDP-GalNAc:
T2 71-161 Sentence denotes Fuc alpha 1----2Gal alpha 1----3GalNAc transferase (histo-blood group A transferase) mRNA.
T3 162-389 Sentence denotes Based on the partial amino acid sequence, the cDNA encoding UDP-GalNAc:Fuc alpha 1----2Gal alpha 1----3GalNAc transferase, the specific primary gene product of histo-blood group A gene (A transferase), was cloned and sequenced.
T4 390-539 Sentence denotes Poly(A)+ RNA from human stomach cancer cell line MKN45, expressing high levels of A antigen, was used for construction of a lambda gt10 cDNA library.
T5 540-849 Sentence denotes Degenerate synthetic oligodeoxynucleotides were used for polymerase chain reactions to detect the presence of the sequence of interest in cDNA (presence test) and to identify the correct clones (identification test) after screening the library with a radiolabeled polymerase chain reaction amplified fragment.
T6 850-952 Sentence denotes Nucleotide sequence analysis revealed a coding region of 1062 base pairs encoding a protein of 41 kDa.
T7 953-1172 Sentence denotes Hydrophobicity plot analysis shows the existence of three domains: N-terminal short stretch, transmembranous hydrophobic region, and a long C-terminal domain (a feature common to all glycosyltransferases cloned so far).
T8 1173-1267 Sentence denotes Southern hybridization analysis has shown that this DNA does not represent a multigene family.
T9 1268-1361 Sentence denotes No restriction fragment length polymorphism was found to correlate with ABO blood group type.
T10 1362-1468 Sentence denotes Bands were detected in Northern hybridization of mRNAs from cell lines expressing A, B, AB, or H antigens.
T11 1469-1730 Sentence denotes These results suggest that sequences of ABO genes are essentially very similar (with minimal differences), and the inability of the O gene to encode A or B transferases is probably due to structural differences rather than A or B transferase expression failure.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 129-142 https://glytoucan.org/Structures/Glycans/G17108EX denotes blood group A
T2 129-142 https://glytoucan.org/Structures/Glycans/G58507AZ denotes blood group A
T3 328-341 https://glytoucan.org/Structures/Glycans/G17108EX denotes blood group A
T4 328-341 https://glytoucan.org/Structures/Glycans/G58507AZ denotes blood group A
T5 472-481 https://glytoucan.org/Structures/Glycans/G71832QJ denotes A antigen
T6 1457-1467 https://glytoucan.org/Structures/Glycans/G46868TY denotes H antigens

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 129-134 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T2 129-134 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood
T3 328-333 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T4 328-333 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood
T5 414-421 http://purl.obolibrary.org/obo/MAT_0000051 denotes stomach
T6 1344-1349 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T7 1344-1349 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 414-428 HP_0006753 denotes stomach cancer
T2 414-428 HP_0012126 denotes stomach cancer
T3 422-428 HP_0002664 denotes cancer

glycogenes

Id Subject Object Predicate Lexical cue
PD-GlycoGenes20190927-B_T1 1205-1208 https://acgg.asia/db/ggdb/info/gg135 denotes has

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 414-428 Disease denotes stomach cancer http://purl.obolibrary.org/obo/MONDO_0001056

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 63-69 Glycan denotes GalNAc
T2 129-142 Glycan denotes blood group A
T3 328-341 Glycan denotes blood group A

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 63-69 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL

GlyCosmos15-HP

Id Subject Object Predicate Lexical cue hp_id
T1 414-428 Phenotype denotes stomach cancer HP:0012126

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 53-58 OrganismTaxon denotes human 9606
T2 408-413 OrganismTaxon denotes human 9606

GlyCosmos15-CL

Id Subject Object Predicate Lexical cue cl_id
T1 390-394 Cell denotes Poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T3 422-433 Cell denotes cancer cell http://purl.obolibrary.org/obo/CL:0001064

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 129-134 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T2 328-333 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 414-421 Body_part denotes stomach http://purl.obolibrary.org/obo/UBERON_0000945
T4 514-520 Body_part denotes lambda http://purl.obolibrary.org/obo/UBERON_0013424
T5 1046-1061 Body_part denotes transmembranous http://purl.obolibrary.org/obo/GO_0016020
T6 1344-1349 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 414-428 Disease denotes stomach cancer MONDO:0001056|MONDO:0004950

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-70 Sentence denotes Cloning and characterization of DNA complementary to human UDP-GalNAc:
T2 71-161 Sentence denotes Fuc alpha 1----2Gal alpha 1----3GalNAc transferase (histo-blood group A transferase) mRNA.
T3 162-389 Sentence denotes Based on the partial amino acid sequence, the cDNA encoding UDP-GalNAc:Fuc alpha 1----2Gal alpha 1----3GalNAc transferase, the specific primary gene product of histo-blood group A gene (A transferase), was cloned and sequenced.
T4 390-539 Sentence denotes Poly(A)+ RNA from human stomach cancer cell line MKN45, expressing high levels of A antigen, was used for construction of a lambda gt10 cDNA library.
T5 540-849 Sentence denotes Degenerate synthetic oligodeoxynucleotides were used for polymerase chain reactions to detect the presence of the sequence of interest in cDNA (presence test) and to identify the correct clones (identification test) after screening the library with a radiolabeled polymerase chain reaction amplified fragment.
T6 850-952 Sentence denotes Nucleotide sequence analysis revealed a coding region of 1062 base pairs encoding a protein of 41 kDa.
T7 953-1172 Sentence denotes Hydrophobicity plot analysis shows the existence of three domains: N-terminal short stretch, transmembranous hydrophobic region, and a long C-terminal domain (a feature common to all glycosyltransferases cloned so far).
T8 1173-1267 Sentence denotes Southern hybridization analysis has shown that this DNA does not represent a multigene family.
T9 1268-1361 Sentence denotes No restriction fragment length polymorphism was found to correlate with ABO blood group type.
T10 1362-1468 Sentence denotes Bands were detected in Northern hybridization of mRNAs from cell lines expressing A, B, AB, or H antigens.
T11 1469-1730 Sentence denotes These results suggest that sequences of ABO genes are essentially very similar (with minimal differences), and the inability of the O gene to encode A or B transferases is probably due to structural differences rather than A or B transferase expression failure.

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 129-134 Body_part denotes blood FMA:9670
T2 328-333 Body_part denotes blood FMA:9670
T3 414-421 Body_part denotes stomach FMA:7148
T4 514-520 Body_part denotes lambda FMA:264773
T5 1344-1349 Body_part denotes blood FMA:9670

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 129-134 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000315
T2 328-333 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000315
T3 414-421 Body_part denotes stomach http://purl.obolibrary.org/obo/MAT_0000051
T4 1344-1349 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000315

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 53-58 OrganismTaxon denotes human 9606
T2 408-413 OrganismTaxon denotes human 9606

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 129-134 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315
T3 328-333 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315
T5 414-421 Body_part denotes stomach http://purl.obolibrary.org/obo/MAT_0000051
T6 1344-1349 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 129-134 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T2 328-333 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 414-421 Body_part denotes stomach http://purl.obolibrary.org/obo/UBERON_0000945
T4 514-520 Body_part denotes lambda http://purl.obolibrary.org/obo/UBERON_0013424
T5 1046-1061 Body_part denotes transmembranous http://purl.obolibrary.org/obo/GO_0016020
T6 1344-1349 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 414-428 Phenotype denotes stomach cancer HP:0012126