PubMed:21036948
Annnotations
Glycan-Motif
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1480-1492 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acids |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1480-1492 | Glycan_Motif | denotes | sialic acids | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1480-1492 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acids |
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 115-125 | http://purl.obolibrary.org/obo/MAT_0000043 | denotes | intestinal |
| T2 | 251-261 | http://purl.obolibrary.org/obo/MAT_0000043 | denotes | intestines |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-142 | Sentence | denotes | An exo-alpha-sialidase from bifidobacteria involved in the degradation of sialyloligosaccharides in human milk and intestinal glycoconjugates. |
| TextSentencer_T2 | 143-385 | Sentence | denotes | Bifidobacteria are health-promoting enteric commensals that are assumed to proliferate predominantly in the intestines of breast-fed infants by assimilating human milk oligosaccharides (HMOs) that are frequently fucosylated and/or sialylated. |
| TextSentencer_T3 | 386-563 | Sentence | denotes | We previously identified two different α-l-fucosidases in Bifidobacterium bifidum and showed that the strain furnishes an extracellular degradation pathway for fucosylated HMOs. |
| TextSentencer_T4 | 564-649 | Sentence | denotes | However, the catabolism of sialylated HMOs by bifidobacteria has remained unresolved. |
| TextSentencer_T5 | 650-747 | Sentence | denotes | Here we describe the identification and characterization of an exo-α-sialidase in bifidobacteria. |
| TextSentencer_T6 | 748-959 | Sentence | denotes | By expression cloning, we isolated a novel exo-α-sialidase gene (siabb2) from B. bifidum JCM1254, which encodes a protein (SiaBb2) consisting of 835-amino-acid residues with a predicted molecular mass of 87 kDa. |
| TextSentencer_T7 | 960-1212 | Sentence | denotes | SiaBb2 possesses an N-terminal signal sequence, a sialidase catalytic domain classified into the glycoside hydrolase family 33 (GH33) and a C-terminal transmembrane region, indicating that the mature SiaBb2 is an extracellular membrane-anchored enzyme. |
| TextSentencer_T8 | 1213-1346 | Sentence | denotes | The recombinant enzyme expressed in Escherichia coli showed the highest activity in an acidic pH range from 4.0 to 5.0, and at 50 °C. |
| TextSentencer_T9 | 1347-1462 | Sentence | denotes | Notably, 80% activity remained after 30 min incubation at 80 °C, indicating that the enzyme is highly thermostable. |
| TextSentencer_T10 | 1463-1698 | Sentence | denotes | SiaBb2 liberated sialic acids from sialyloligosaccharides, gangliosides, glycoproteins and colominic acid; however, the linkage preference of the enzyme was remarkably biased toward the α2,3-linkage rather than α2,6- and α2,8-linkages. |
| TextSentencer_T11 | 1699-1857 | Sentence | denotes | Expression of siabb2 in B. longum 105-A, which has no endogenous exo-α-sialidase, enabled this strain to degrade sialyloligosaccharides present in human milk. |
| TextSentencer_T12 | 1858-1960 | Sentence | denotes | Our results suggest that SiaBb2 plays a crucial role in bifidobacterial catabolism of sialylated HMOs. |
| T1 | 0-142 | Sentence | denotes | An exo-alpha-sialidase from bifidobacteria involved in the degradation of sialyloligosaccharides in human milk and intestinal glycoconjugates. |
| T2 | 143-385 | Sentence | denotes | Bifidobacteria are health-promoting enteric commensals that are assumed to proliferate predominantly in the intestines of breast-fed infants by assimilating human milk oligosaccharides (HMOs) that are frequently fucosylated and/or sialylated. |
| T3 | 386-563 | Sentence | denotes | We previously identified two different α-l-fucosidases in Bifidobacterium bifidum and showed that the strain furnishes an extracellular degradation pathway for fucosylated HMOs. |
| T4 | 564-649 | Sentence | denotes | However, the catabolism of sialylated HMOs by bifidobacteria has remained unresolved. |
| T5 | 650-747 | Sentence | denotes | Here we describe the identification and characterization of an exo-α-sialidase in bifidobacteria. |
| T6 | 748-959 | Sentence | denotes | By expression cloning, we isolated a novel exo-α-sialidase gene (siabb2) from B. bifidum JCM1254, which encodes a protein (SiaBb2) consisting of 835-amino-acid residues with a predicted molecular mass of 87 kDa. |
| T7 | 960-1212 | Sentence | denotes | SiaBb2 possesses an N-terminal signal sequence, a sialidase catalytic domain classified into the glycoside hydrolase family 33 (GH33) and a C-terminal transmembrane region, indicating that the mature SiaBb2 is an extracellular membrane-anchored enzyme. |
| T8 | 1213-1462 | Sentence | denotes | The recombinant enzyme expressed in Escherichia coli showed the highest activity in an acidic pH range from 4.0 to 5.0, and at 50 °C. Notably, 80% activity remained after 30 min incubation at 80 °C, indicating that the enzyme is highly thermostable. |
| T9 | 1463-1698 | Sentence | denotes | SiaBb2 liberated sialic acids from sialyloligosaccharides, gangliosides, glycoproteins and colominic acid; however, the linkage preference of the enzyme was remarkably biased toward the α2,3-linkage rather than α2,6- and α2,8-linkages. |
| T10 | 1699-1857 | Sentence | denotes | Expression of siabb2 in B. longum 105-A, which has no endogenous exo-α-sialidase, enabled this strain to degrade sialyloligosaccharides present in human milk. |
| T11 | 1858-1960 | Sentence | denotes | Our results suggest that SiaBb2 plays a crucial role in bifidobacterial catabolism of sialylated HMOs. |
| T1 | 0-142 | Sentence | denotes | An exo-alpha-sialidase from bifidobacteria involved in the degradation of sialyloligosaccharides in human milk and intestinal glycoconjugates. |
| T2 | 143-385 | Sentence | denotes | Bifidobacteria are health-promoting enteric commensals that are assumed to proliferate predominantly in the intestines of breast-fed infants by assimilating human milk oligosaccharides (HMOs) that are frequently fucosylated and/or sialylated. |
| T3 | 386-563 | Sentence | denotes | We previously identified two different α-l-fucosidases in Bifidobacterium bifidum and showed that the strain furnishes an extracellular degradation pathway for fucosylated HMOs. |
| T4 | 564-649 | Sentence | denotes | However, the catabolism of sialylated HMOs by bifidobacteria has remained unresolved. |
| T5 | 650-747 | Sentence | denotes | Here we describe the identification and characterization of an exo-α-sialidase in bifidobacteria. |
| T6 | 748-959 | Sentence | denotes | By expression cloning, we isolated a novel exo-α-sialidase gene (siabb2) from B. bifidum JCM1254, which encodes a protein (SiaBb2) consisting of 835-amino-acid residues with a predicted molecular mass of 87 kDa. |
| T7 | 960-1212 | Sentence | denotes | SiaBb2 possesses an N-terminal signal sequence, a sialidase catalytic domain classified into the glycoside hydrolase family 33 (GH33) and a C-terminal transmembrane region, indicating that the mature SiaBb2 is an extracellular membrane-anchored enzyme. |
| T8 | 1213-1346 | Sentence | denotes | The recombinant enzyme expressed in Escherichia coli showed the highest activity in an acidic pH range from 4.0 to 5.0, and at 50 °C. |
| T9 | 1347-1462 | Sentence | denotes | Notably, 80% activity remained after 30 min incubation at 80 °C, indicating that the enzyme is highly thermostable. |
| T10 | 1463-1698 | Sentence | denotes | SiaBb2 liberated sialic acids from sialyloligosaccharides, gangliosides, glycoproteins and colominic acid; however, the linkage preference of the enzyme was remarkably biased toward the α2,3-linkage rather than α2,6- and α2,8-linkages. |
| T11 | 1699-1857 | Sentence | denotes | Expression of siabb2 in B. longum 105-A, which has no endogenous exo-α-sialidase, enabled this strain to degrade sialyloligosaccharides present in human milk. |
| T12 | 1858-1960 | Sentence | denotes | Our results suggest that SiaBb2 plays a crucial role in bifidobacterial catabolism of sialylated HMOs. |
GlycoBiology-PACDB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 1249-1265 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 | denotes | Escherichia coli |
| _T2 | 1249-1265 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 | denotes | Escherichia coli |
| _T3 | 1249-1265 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 | denotes | Escherichia coli |
| _T4 | 1249-1265 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 | denotes | Escherichia coli |
| _T5 | 1249-1265 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 | denotes | Escherichia coli |
| _T6 | 1249-1265 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 | denotes | Escherichia coli |
| _T7 | 1249-1265 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 | denotes | Escherichia coli |
| _T8 | 1249-1265 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 | denotes | Escherichia coli |
| _T9 | 1249-1272 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 | denotes | Escherichia coli showed |
GlycoBiology-FMA
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 106-110 | FMAID:165676 | denotes | milk |
| _T2 | 115-125 | FMAID:226991 | denotes | intestinal |
| _T3 | 115-125 | FMAID:93674 | denotes | intestinal |
| _T4 | 115-125 | FMAID:7199 | denotes | intestinal |
| _T5 | 126-141 | FMAID:196776 | denotes | glycoconjugates |
| _T6 | 126-141 | FMAID:82782 | denotes | glycoconjugates |
| _T7 | 251-261 | FMAID:7199 | denotes | intestines |
| _T8 | 251-261 | FMAID:93674 | denotes | intestines |
| _T9 | 251-261 | FMAID:226991 | denotes | intestines |
| _T10 | 265-271 | FMAID:9601 | denotes | breast |
| _T11 | 265-271 | FMAID:97486 | denotes | breast |
| _T12 | 306-310 | FMAID:165676 | denotes | milk |
| _T13 | 311-327 | FMAID:82742 | denotes | oligosaccharides |
| _T14 | 311-327 | FMAID:196731 | denotes | oligosaccharides |
| _T15 | 807-811 | FMAID:198663 | denotes | gene |
| _T16 | 862-869 | FMAID:67257 | denotes | protein |
| _T17 | 862-869 | FMAID:165447 | denotes | protein |
| _T18 | 897-907 | FMAID:82739 | denotes | amino-acid |
| _T19 | 897-907 | FMAID:196728 | denotes | amino-acid |
| _T20 | 1173-1195 | FMAID:63871 | denotes | extracellular membrane |
| _T21 | 1173-1195 | FMAID:201486 | denotes | extracellular membrane |
| _T22 | 1173-1195 | FMAID:162335 | denotes | extracellular membrane |
| _T23 | 1173-1195 | FMAID:200943 | denotes | extracellular membrane |
| _T24 | 1522-1534 | FMAID:82816 | denotes | gangliosides |
| _T25 | 1522-1534 | FMAID:196811 | denotes | gangliosides |
| _T26 | 1536-1549 | FMAID:62925 | denotes | glycoproteins |
| _T27 | 1536-1549 | FMAID:167256 | denotes | glycoproteins |
| _T28 | 1852-1856 | FMAID:165676 | denotes | milk |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 28-42 | http://purl.bioontology.org/ontology/NCBITAXON/85004 | denotes | bifidobacteria |
| T2 | 28-42 | http://purl.bioontology.org/ontology/NCBITAXON/180216 | denotes | bifidobacteria |
| T3 | 143-157 | http://purl.bioontology.org/ontology/NCBITAXON/85004 | denotes | Bifidobacteria |
| T4 | 143-157 | http://purl.bioontology.org/ontology/NCBITAXON/180216 | denotes | Bifidobacteria |
| T5 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/78345 | denotes | Bifidobacterium |
| T6 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/41200 | denotes | Bifidobacterium |
| T7 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/1683 | denotes | Bifidobacterium |
| T8 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/85004 | denotes | Bifidobacterium |
| T9 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/78448 | denotes | Bifidobacterium |
| T10 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/180216 | denotes | Bifidobacterium |
| T11 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/216816 | denotes | Bifidobacterium |
| T12 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/638617 | denotes | Bifidobacterium |
| T13 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/471511 | denotes | Bifidobacterium |
| T14 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/1685 | denotes | Bifidobacterium |
| T15 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/1691 | denotes | Bifidobacterium |
| T16 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/35760 | denotes | Bifidobacterium |
| T17 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/78344 | denotes | Bifidobacterium |
| T18 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/1689 | denotes | Bifidobacterium |
| T19 | 444-459 | http://purl.bioontology.org/ontology/NCBITAXON/78342 | denotes | Bifidobacterium |
| T20 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361840 | denotes | Bifidobacterium bifidum |
| T21 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/1686 | denotes | Bifidobacterium bifidum |
| T22 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/1681 | denotes | Bifidobacterium bifidum |
| T23 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/762212 | denotes | Bifidobacterium bifidum |
| T24 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/871663 | denotes | Bifidobacterium bifidum |
| T25 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/983706 | denotes | Bifidobacterium bifidum |
| T26 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/390743 | denotes | Bifidobacterium bifidum |
| T27 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/78346 | denotes | Bifidobacterium bifidum |
| T28 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/669306 | denotes | Bifidobacterium bifidum |
| T29 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/1004589 | denotes | Bifidobacterium bifidum |
| T30 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/1004590 | denotes | Bifidobacterium bifidum |
| T31 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/308029 | denotes | Bifidobacterium bifidum |
| T32 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/165171 | denotes | Bifidobacterium bifidum |
| T33 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/77635 | denotes | Bifidobacterium bifidum |
| T34 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/575326 | denotes | Bifidobacterium bifidum |
| T35 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/575338 | denotes | Bifidobacterium bifidum |
| T36 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/575347 | denotes | Bifidobacterium bifidum |
| T37 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/575327 | denotes | Bifidobacterium bifidum |
| T38 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/575340 | denotes | Bifidobacterium bifidum |
| T39 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361825 | denotes | Bifidobacterium bifidum |
| T40 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361826 | denotes | Bifidobacterium bifidum |
| T41 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361827 | denotes | Bifidobacterium bifidum |
| T42 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361828 | denotes | Bifidobacterium bifidum |
| T43 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361829 | denotes | Bifidobacterium bifidum |
| T44 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361832 | denotes | Bifidobacterium bifidum |
| T45 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361833 | denotes | Bifidobacterium bifidum |
| T46 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361834 | denotes | Bifidobacterium bifidum |
| T47 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361837 | denotes | Bifidobacterium bifidum |
| T48 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361838 | denotes | Bifidobacterium bifidum |
| T49 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361839 | denotes | Bifidobacterium bifidum |
| T50 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/1687 | denotes | Bifidobacterium bifidum |
| T51 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361841 | denotes | Bifidobacterium bifidum |
| T52 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/575339 | denotes | Bifidobacterium bifidum |
| T53 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361844 | denotes | Bifidobacterium bifidum |
| T54 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361845 | denotes | Bifidobacterium bifidum |
| T55 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361846 | denotes | Bifidobacterium bifidum |
| T56 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361847 | denotes | Bifidobacterium bifidum |
| T57 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361848 | denotes | Bifidobacterium bifidum |
| T58 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/165168 | denotes | Bifidobacterium bifidum |
| T59 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361852 | denotes | Bifidobacterium bifidum |
| T60 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361853 | denotes | Bifidobacterium bifidum |
| T61 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361854 | denotes | Bifidobacterium bifidum |
| T62 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/359132 | denotes | Bifidobacterium bifidum |
| T63 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/1325798 | denotes | Bifidobacterium bifidum |
| T64 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/565600 | denotes | Bifidobacterium bifidum |
| T65 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/435955 | denotes | Bifidobacterium bifidum |
| T66 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/435956 | denotes | Bifidobacterium bifidum |
| T67 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/435957 | denotes | Bifidobacterium bifidum |
| T68 | 444-467 | http://purl.bioontology.org/ontology/NCBITAXON/361849 | denotes | Bifidobacterium bifidum |
| T69 | 444-471 | http://purl.bioontology.org/ontology/NCBITAXON/28025 | denotes | Bifidobacterium bifidum and |
| T70 | 444-471 | http://purl.bioontology.org/ontology/NCBITAXON/1684 | denotes | Bifidobacterium bifidum and |
| T71 | 610-624 | http://purl.bioontology.org/ontology/NCBITAXON/180216 | denotes | bifidobacteria |
| T72 | 610-624 | http://purl.bioontology.org/ontology/NCBITAXON/85004 | denotes | bifidobacteria |
| T73 | 732-746 | http://purl.bioontology.org/ontology/NCBITAXON/180216 | denotes | bifidobacteria |
| T74 | 732-746 | http://purl.bioontology.org/ontology/NCBITAXON/85004 | denotes | bifidobacteria |
| T75 | 1249-1260 | http://purl.bioontology.org/ontology/NCBITAXON/561 | denotes | Escherichia |
| T76 | 1914-1929 | http://purl.bioontology.org/ontology/NCBITAXON/983706 | denotes | bifidobacterial |
| T77 | 1914-1929 | http://purl.bioontology.org/ontology/NCBITAXON/85004 | denotes | bifidobacterial |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 59-70 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degradation |
| T2 | 522-533 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degradation |
| T3 | 1804-1811 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degrade |
| T4 | 187-197 | http://purl.obolibrary.org/obo/GO_0085031 | denotes | commensals |
| T5 | 355-366 | http://purl.obolibrary.org/obo/GO_0036065 | denotes | fucosylated |
| T6 | 546-557 | http://purl.obolibrary.org/obo/GO_0036065 | denotes | fucosylated |
| T7 | 374-384 | http://purl.obolibrary.org/obo/GO_0097503 | denotes | sialylated |
| T8 | 591-601 | http://purl.obolibrary.org/obo/GO_0097503 | denotes | sialylated |
| T9 | 1944-1954 | http://purl.obolibrary.org/obo/GO_0097503 | denotes | sialylated |
| T10 | 577-587 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | catabolism |
| T11 | 1930-1940 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | catabolism |
| T12 | 991-997 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signal |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1196-1204 | http://purl.obolibrary.org/obo/GO_0043495 | denotes | anchored |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 508-521 | http://purl.obolibrary.org/obo/GO_0005576 | denotes | extracellular |
| T2 | 1173-1186 | http://purl.obolibrary.org/obo/GO_0005576 | denotes | extracellular |
| T3 | 1111-1124 | http://purl.obolibrary.org/obo/GO_0016021 | denotes | transmembrane |
| T4 | 1111-1124 | http://purl.obolibrary.org/obo/GO_0044214 | denotes | transmembrane |
| T5 | 1187-1195 | http://purl.obolibrary.org/obo/GO_0016020 | denotes | membrane |
| T6 | 1187-1204 | http://purl.obolibrary.org/obo/GO_0031225 | denotes | membrane-anchored |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 106-110 | http://purl.obolibrary.org/obo/UBERON_0001913 | denotes | milk |
| T2 | 306-310 | http://purl.obolibrary.org/obo/UBERON_0001913 | denotes | milk |
| T3 | 1852-1856 | http://purl.obolibrary.org/obo/UBERON_0001913 | denotes | milk |
| T4 | 115-125 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestinal |
| T5 | 251-261 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestines |
| T6 | 265-271 | http://purl.obolibrary.org/obo/UBERON_0000310 | denotes | breast |
Allie
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| SS1_21036948_1_0 | 300-327 | expanded | denotes | human milk oligosaccharides |
| SS2_21036948_1_0 | 329-333 | abbr | denotes | HMOs |
| SS1_21036948_6_0 | 1057-1086 | expanded | denotes | glycoside hydrolase family 33 |
| SS2_21036948_6_0 | 1088-1092 | abbr | denotes | GH33 |
| AE1_21036948_1_0 | SS1_21036948_1_0 | SS2_21036948_1_0 | abbreviatedTo | human milk oligosaccharides,HMOs |
| AE1_21036948_6_0 | SS1_21036948_6_0 | SS2_21036948_6_0 | abbreviatedTo | glycoside hydrolase family 33,GH33 |
GlycoBiology-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 115-125 | http://purl.obolibrary.org/obo/MAT_0000043 | denotes | intestinal |
| T2 | 251-261 | http://purl.obolibrary.org/obo/MAT_0000043 | denotes | intestines |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 115-125 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestinal |
| PD-UBERON-AE-B_T2 | 251-261 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestines |
| PD-UBERON-AE-B_T3 | 265-271 | http://purl.obolibrary.org/obo/UBERON_0000310 | denotes | breast |
| PD-UBERON-AE-B_T4 | 106-110 | http://purl.obolibrary.org/obo/UBERON_0001913 | denotes | milk |
| PD-UBERON-AE-B_T5 | 306-310 | http://purl.obolibrary.org/obo/UBERON_0001913 | denotes | milk |
| PD-UBERON-AE-B_T6 | 1852-1856 | http://purl.obolibrary.org/obo/UBERON_0001913 | denotes | milk |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 100-105 | OrganismTaxon | denotes | human | 9606 |
| T2 | 300-305 | OrganismTaxon | denotes | human | 9606 |
| T3 | 444-467 | OrganismTaxon | denotes | Bifidobacterium bifidum | 1681 |
| T4 | 1249-1265 | OrganismTaxon | denotes | Escherichia coli | 562 |
| T5 | 1846-1851 | OrganismTaxon | denotes | human | 9606 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 115-125 | Body_part | denotes | intestinal | http://purl.obolibrary.org/obo/MAT_0000043 |
| T2 | 251-261 | Body_part | denotes | intestines | http://purl.obolibrary.org/obo/MAT_0000043 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 106-110 | Body_part | denotes | milk | http://purl.obolibrary.org/obo/UBERON_0001913 |
| T2 | 251-261 | Body_part | denotes | intestines | http://purl.obolibrary.org/obo/UBERON_0000160 |
| T3 | 265-271 | Body_part | denotes | breast | http://purl.obolibrary.org/obo/UBERON_0000310 |
| T4 | 306-310 | Body_part | denotes | milk | http://purl.obolibrary.org/obo/UBERON_0001913 |
| T5 | 508-521 | Body_part | denotes | extracellular | http://purl.obolibrary.org/obo/GO_0005576 |
| T6 | 1111-1124 | Body_part | denotes | transmembrane | http://purl.obolibrary.org/obo/GO_0016020 |
| T7 | 1173-1186 | Body_part | denotes | extracellular | http://purl.obolibrary.org/obo/GO_0005576 |
| T8 | 1187-1195 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T11 | 1852-1856 | Body_part | denotes | milk | http://purl.obolibrary.org/obo/UBERON_0001913 |