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PubMed:2102847 JSONTXT

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OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 48-61 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T2 131-144 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T3 183-196 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T4 521-522 http://identifiers.org/oryzabase.gene/11216 denotes 1
T5 587-600 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T6 701-714 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T7 730-731 http://identifiers.org/oryzabase.gene/11216 denotes 1
T8 969-982 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T9 1055-1068 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T10 1230-1243 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T11 1521-1534 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 759-763 http://identifiers.org/oryzabase.gene/8053 denotes Amy1
T2 1121-1125 http://identifiers.org/oryzabase.gene/8109 denotes CATC
T52454 759-763 http://identifiers.org/rapdb.locus/Os02g0765600 denotes Amy1
T81432 1121-1125 http://identifiers.org/rapdb.locus/Os03g0131200 denotes CATC

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1186-1196 hunflair:NA:Chemical denotes pyrimidine
M_1 784-789 hunflair:NA:Species denotes wheat
M_2 1009-1014 hunflair:NA:Species denotes wheat
M_3 1417-1422 hunflair:NA:Species denotes wheat
M_4 48-78 hunflair:NA:Gene denotes alpha-amylase multigene family
M_5 131-161 hunflair:NA:Gene denotes alpha-amylase multigene family
M_6 531-535 hunflair:NA:Gene denotes OSg2
M_7 633-637 hunflair:NA:Gene denotes OSg2
M_8 798-802 hunflair:NA:Gene denotes OSg2
M_9 1330-1340 hunflair:NA:Chemical denotes amino acid
M_10 43-47 hunflair:NA:Species denotes rice
M_11 126-130 hunflair:NA:Species denotes rice
M_12 667-671 hunflair:NA:Species denotes rice
M_13 696-700 hunflair:NA:Species denotes rice
M_14 992-996 hunflair:NA:Species denotes rice
M_15 1400-1404 hunflair:NA:Species denotes rice
M_16 773-779 hunflair:NA:Species denotes barley
M_17 998-1004 hunflair:NA:Species denotes barley
M_18 1406-1412 hunflair:NA:Species denotes barley
M_19 753-769 hunflair:NA:Gene denotes alpha-Amy1 genes
M_20 48-61 hunflair:NA:Gene denotes alpha-amylase
M_21 131-144 hunflair:NA:Gene denotes alpha-amylase
M_22 183-196 hunflair:NA:Gene denotes alpha-amylase
M_23 587-600 hunflair:NA:Gene denotes alpha-amylase
M_24 701-714 hunflair:NA:Gene denotes alpha-amylase
M_25 969-982 hunflair:NA:Gene denotes alpha-amylase
M_26 1055-1068 hunflair:NA:Gene denotes alpha-amylase
M_27 1230-1243 hunflair:NA:Gene denotes alpha-amylase
M_28 1521-1534 hunflair:NA:Gene denotes alpha-amylase
M_29 1286-1302 hunflair:NA:Chemical denotes gibberellic acid
M_30 580-586 hunflair:NA:Species denotes cereal

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 48-61 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T2 131-144 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T3 183-196 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T4 587-600 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T5 701-714 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T6 759-763 http://identifiers.org/oryzabase.gene/8053 denotes Amy1
T7 969-982 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T8 1055-1068 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T9 1121-1125 http://identifiers.org/oryzabase.gene/8109 denotes CATC
T10 1230-1243 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T11 1521-1534 http://identifiers.org/oryzabase.gene/15692 denotes alpha-amylase
T42527 759-763 http://identifiers.org/ricegap/LOC_Os02g52710 denotes Amy1
T86175 1121-1125 http://identifiers.org/ricegap/LOC_Os03g03910 denotes CATC
T6117 759-763 http://identifiers.org/rapdb.locus/Os02g0765600 denotes Amy1
T60131 1121-1125 http://identifiers.org/rapdb.locus/Os03g0131200 denotes CATC
T74291 759-763 http://identifiers.org/uniprot/Q0DXA4 denotes Amy1
T57527 759-763 http://identifiers.org/uniprot/P17654 denotes Amy1
T8896 1121-1125 http://identifiers.org/uniprot/Q10S82 denotes CATC
T12281 1121-1125 http://identifiers.org/uniprot/B8AME2 denotes CATC
M_0 1186-1196 hunflair:NA:Chemical denotes pyrimidine
M_1 784-789 hunflair:NA:Species denotes wheat
M_2 1009-1014 hunflair:NA:Species denotes wheat
M_3 1417-1422 hunflair:NA:Species denotes wheat
M_4 48-78 hunflair:NA:Gene denotes alpha-amylase multigene family
M_5 131-161 hunflair:NA:Gene denotes alpha-amylase multigene family
M_6 531-535 hunflair:NA:Gene denotes OSg2
M_7 633-637 hunflair:NA:Gene denotes OSg2
M_8 798-802 hunflair:NA:Gene denotes OSg2
M_9 1330-1340 hunflair:NA:Chemical denotes amino acid
M_10 43-47 hunflair:NA:Species denotes rice
M_11 126-130 hunflair:NA:Species denotes rice
M_12 667-671 hunflair:NA:Species denotes rice
M_13 696-700 hunflair:NA:Species denotes rice
M_14 992-996 hunflair:NA:Species denotes rice
M_15 1400-1404 hunflair:NA:Species denotes rice
M_16 773-779 hunflair:NA:Species denotes barley
M_17 998-1004 hunflair:NA:Species denotes barley
M_18 1406-1412 hunflair:NA:Species denotes barley
M_19 753-769 hunflair:NA:Gene denotes alpha-Amy1 genes
M_20 48-61 hunflair:NA:Gene denotes alpha-amylase
M_21 131-144 hunflair:NA:Gene denotes alpha-amylase
M_22 183-196 hunflair:NA:Gene denotes alpha-amylase
M_23 587-600 hunflair:NA:Gene denotes alpha-amylase
M_24 701-714 hunflair:NA:Gene denotes alpha-amylase
M_25 969-982 hunflair:NA:Gene denotes alpha-amylase
M_26 1055-1068 hunflair:NA:Gene denotes alpha-amylase
M_27 1230-1243 hunflair:NA:Gene denotes alpha-amylase
M_28 1521-1534 hunflair:NA:Gene denotes alpha-amylase
M_29 1286-1302 hunflair:NA:Chemical denotes gibberellic acid
M_30 580-586 hunflair:NA:Species denotes cereal

OryzaGP

Id Subject Object Predicate Lexical cue
T1 531-535 gene denotes OSg2
T2 633-637 gene denotes OSg2
T3 759-763 gene denotes Amy1
T4 798-802 gene denotes OSg2
T5 1121-1125 gene denotes CATC

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-79 Sentence denotes Classification and characterization of the rice alpha-amylase multigene family.
T2 80-245 Sentence denotes To establish the size and organization of the rice alpha-amylase multigene family, we have isolated 30 alpha-amylase clones from three independent genomic libraries.
T3 246-371 Sentence denotes Partial characterization of these clones indicates that they fall into 5 hybridization groups containing a total of 10 genes.
T4 372-472 Sentence denotes Two clones belonging to the Group 3 hybridization class have more than one gene per cloned fragment.
T5 473-691 Sentence denotes The nucleotide sequence of one clone from Group 1, lambda OSg2, was determined and compared to other known cereal alpha-amylase sequences revealing that lambda OSg2 is the genomic analog of the rice cDNA clone, pOS103.
T6 692-880 Sentence denotes The rice alpha-amylase genes in Group 1 are analogous to the alpha-Amy1 genes in barley and wheat. lambda OSg2 contains sequence motifs common to most actively transcribed genes in plants.
T7 881-1015 Sentence denotes Two consensus sequences, TAACAAGA and TATCCAT, were found in the 5' flanking regions of alpha-amylase genes of rice, barley and wheat.
T8 1016-1157 Sentence denotes The former sequence may be specific to alpha-amylase gene while the latter sequence may be related to a 'CATC' box found in many plant genes.
T9 1158-1308 Sentence denotes Another sequence called the pyrimidine box (TCCTTTTTC) was found in the alpha-amylase genes as well as other genes regulated by gibberellic acid (GA).
T10 1309-1478 Sentence denotes Comparisons based on amino acid sequence alignment revealed that the multigene families in rice, barley and wheat shared a common ancestor which contained three introns.
T11 1479-1618 Sentence denotes Some of the descendants of the progenitor alpha-amylase gene appear to have lost the middle intron while others maintain all three introns.