PubMed:20972440 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/20972440","sourcedb":"PubMed","sourceid":"20972440","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/20972440","text":"Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.\nGenome-wide association studies (GWAS) have identified ten loci harboring common variants that influence risk of developing colorectal cancer (CRC). To enhance the power to identify additional CRC risk loci, we conducted a meta-analysis of three GWAS from the UK which included a total of 3,334 affected individuals (cases) and 4,628 controls followed by multiple validation analyses including a total of 18,095 cases and 20,197 controls. We identified associations at four new CRC risk loci: 1q41 (rs6691170, odds ratio (OR) = 1.06, P = 9.55 × 10⁻¹⁰ and rs6687758, OR = 1.09, P = 2.27 × 10⁻⁹, 3q26.2 (rs10936599, OR = 0.93, P = 3.39 × 10⁻⁸), 12q13.13 (rs11169552, OR = 0.92, P = 1.89 × 10⁻¹⁰ and rs7136702, OR = 1.06, P = 4.02 × 10⁻⁸) and 20q13.33 (rs4925386, OR = 0.93, P = 1.89 × 10⁻¹⁰). In addition to identifying new CRC risk loci, this analysis provides evidence that additional CRC-associated variants of similar effect size remain to be discovered.","tracks":[{"project":"Allie","denotations":[{"id":"SS1_20972440_1_0","span":{"begin":148,"end":179},"obj":"expanded"},{"id":"SS2_20972440_1_0","span":{"begin":181,"end":185},"obj":"abbr"},{"id":"SS1_20972440_1_1","span":{"begin":272,"end":289},"obj":"expanded"},{"id":"SS2_20972440_1_1","span":{"begin":291,"end":294},"obj":"abbr"},{"id":"SS1_20972440_3_0","span":{"begin":658,"end":668},"obj":"expanded"},{"id":"SS2_20972440_3_0","span":{"begin":670,"end":672},"obj":"abbr"}],"relations":[{"id":"AE1_20972440_1_0","pred":"abbreviatedTo","subj":"SS1_20972440_1_0","obj":"SS2_20972440_1_0"},{"id":"AE1_20972440_1_1","pred":"abbreviatedTo","subj":"SS1_20972440_1_1","obj":"SS2_20972440_1_1"},{"id":"AE1_20972440_3_0","pred":"abbreviatedTo","subj":"SS1_20972440_3_0","obj":"SS2_20972440_3_0"}],"attributes":[{"subj":"SS1_20972440_1_0","pred":"source","obj":"Allie"},{"subj":"SS2_20972440_1_0","pred":"source","obj":"Allie"},{"subj":"SS1_20972440_1_1","pred":"source","obj":"Allie"},{"subj":"SS2_20972440_1_1","pred":"source","obj":"Allie"},{"subj":"SS1_20972440_3_0","pred":"source","obj":"Allie"},{"subj":"SS2_20972440_3_0","pred":"source","obj":"Allie"}]},{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":283,"end":289},"obj":"HP_0002664"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"}]},{"project":"DisGeNET5_variant_disease","denotations":[{"id":"20972440-3#60#69#geners6691170","span":{"begin":647,"end":656},"obj":"geners6691170"},{"id":"20972440-3#214#224#geners11169552","span":{"begin":801,"end":811},"obj":"geners11169552"},{"id":"20972440-3#311#320#geners4925386","span":{"begin":898,"end":907},"obj":"geners4925386"},{"id":"20972440-3#116#125#geners6687758","span":{"begin":703,"end":712},"obj":"geners6687758"},{"id":"20972440-3#258#267#geners7136702","span":{"begin":845,"end":854},"obj":"geners7136702"},{"id":"20972440-3#163#173#geners10936599","span":{"begin":750,"end":760},"obj":"geners10936599"},{"id":"20972440-3#39#42#diseaseC0009402","span":{"begin":626,"end":629},"obj":"diseaseC0009402"},{"id":"20972440-3#39#42#diseaseC1527249","span":{"begin":626,"end":629},"obj":"diseaseC1527249"},{"id":"20972440-3#39#42#diseaseC0009402","span":{"begin":626,"end":629},"obj":"diseaseC0009402"},{"id":"20972440-3#39#42#diseaseC1527249","span":{"begin":626,"end":629},"obj":"diseaseC1527249"},{"id":"20972440-3#39#42#diseaseC0009402","span":{"begin":626,"end":629},"obj":"diseaseC0009402"},{"id":"20972440-3#39#42#diseaseC1527249","span":{"begin":626,"end":629},"obj":"diseaseC1527249"},{"id":"20972440-3#39#42#diseaseC0009402","span":{"begin":626,"end":629},"obj":"diseaseC0009402"},{"id":"20972440-3#39#42#diseaseC1527249","span":{"begin":626,"end":629},"obj":"diseaseC1527249"},{"id":"20972440-3#39#42#diseaseC0009402","span":{"begin":626,"end":629},"obj":"diseaseC0009402"},{"id":"20972440-3#39#42#diseaseC1527249","span":{"begin":626,"end":629},"obj":"diseaseC1527249"},{"id":"20972440-3#39#42#diseaseC0009402","span":{"begin":626,"end":629},"obj":"diseaseC0009402"},{"id":"20972440-3#39#42#diseaseC1527249","span":{"begin":626,"end":629},"obj":"diseaseC1527249"}],"relations":[{"id":"60#69#geners669117039#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"60#69#geners669117039#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"60#69#geners669117039#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"60#69#geners669117039#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"60#69#geners669117039#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"60#69#geners669117039#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"60#69#geners669117039#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"60#69#geners669117039#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"60#69#geners669117039#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"60#69#geners669117039#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"60#69#geners669117039#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"60#69#geners669117039#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#60#69#geners6691170","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"214#224#geners1116955239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"214#224#geners1116955239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"214#224#geners1116955239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"214#224#geners1116955239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"214#224#geners1116955239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"214#224#geners1116955239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"214#224#geners1116955239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"214#224#geners1116955239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"214#224#geners1116955239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"214#224#geners1116955239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"214#224#geners1116955239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"214#224#geners1116955239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#214#224#geners11169552","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"311#320#geners492538639#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"311#320#geners492538639#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"311#320#geners492538639#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"311#320#geners492538639#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"311#320#geners492538639#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"311#320#geners492538639#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"311#320#geners492538639#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"311#320#geners492538639#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"311#320#geners492538639#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"311#320#geners492538639#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"311#320#geners492538639#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"311#320#geners492538639#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#311#320#geners4925386","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"116#125#geners668775839#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"116#125#geners668775839#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"116#125#geners668775839#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"116#125#geners668775839#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"116#125#geners668775839#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"116#125#geners668775839#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"116#125#geners668775839#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"116#125#geners668775839#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"116#125#geners668775839#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"116#125#geners668775839#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"116#125#geners668775839#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"116#125#geners668775839#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#116#125#geners6687758","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"258#267#geners713670239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"258#267#geners713670239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"258#267#geners713670239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"258#267#geners713670239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"258#267#geners713670239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"258#267#geners713670239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"258#267#geners713670239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"258#267#geners713670239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"258#267#geners713670239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"258#267#geners713670239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"258#267#geners713670239#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"258#267#geners713670239#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#258#267#geners7136702","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"163#173#geners1093659939#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"163#173#geners1093659939#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"163#173#geners1093659939#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"163#173#geners1093659939#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"163#173#geners1093659939#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"163#173#geners1093659939#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"163#173#geners1093659939#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"163#173#geners1093659939#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"163#173#geners1093659939#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"163#173#geners1093659939#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC1527249"},{"id":"163#173#geners1093659939#42#diseaseC0009402","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC0009402"},{"id":"163#173#geners1093659939#42#diseaseC1527249","pred":"associated_with","subj":"20972440-3#163#173#geners10936599","obj":"20972440-3#39#42#diseaseC1527249"}],"attributes":[{"subj":"20972440-3#60#69#geners6691170","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#214#224#geners11169552","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#311#320#geners4925386","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#116#125#geners6687758","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#258#267#geners7136702","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#163#173#geners10936599","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC0009402","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC1527249","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC0009402","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC1527249","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC0009402","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC1527249","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC0009402","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC1527249","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC0009402","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC1527249","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC0009402","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"20972440-3#39#42#diseaseC1527249","pred":"source","obj":"DisGeNET5_variant_disease"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"Allie","color":"#c4ec93","default":true},{"id":"PubmedHPO","color":"#ec93de"},{"id":"DisGeNET5_variant_disease","color":"#93ece0"}]}]}}