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Inflammaging

Id Subject Object Predicate Lexical cue
T1 0-102 Sentence denotes Cerebrospinal fluid penetration of high-dose daptomycin in suspected Staphylococcus aureus meningitis.
T2 103-113 Sentence denotes OBJECTIVE:
T3 114-337 Sentence denotes To report a case of methicillin-sensitive Staphylococcus aureus (MSSA) bacteremia with suspected MSSA meningitis treated with high-dose daptomycin assessed with concurrent serum and cerebrospinal fluid (CSF) concentrations.
T4 338-351 Sentence denotes CASE SUMMARY:
T5 352-507 Sentence denotes A 54-year-old male presented to the emergency department with generalized weakness and presumed health-care-associated pneumonia shown on chest radiograph.
T6 508-603 Sentence denotes Treatment was empirically initiated with vancomycin, levofloxacin, and piperacillin/tazobactam.
T7 604-663 Sentence denotes Blood cultures revealed S. aureus susceptible to oxacillin.
T8 664-728 Sentence denotes Empiric antibiotic treatment was narrowed to nafcillin on day 4.
T9 729-880 Sentence denotes On day 8, the patient developed acute renal failure (serum creatinine 1.9 mg/dL, increased from 1.2 mg/dL the previous day and 0.8 mg/dL on admission).
T10 881-1046 Sentence denotes The patient's Glasgow Coma Score was 3, with normal findings shown on computed tomography scan of the head 72 hours following an episode of cardiac arrest on day 10.
T11 1047-1177 Sentence denotes The patient experienced relapsing MSSA bacteremia on day 9, increasing the suspicion for a central nervous system (CNS) infection.
T12 1178-1327 Sentence denotes Nafcillin was discontinued and daptomycin 9 mg/kg daily was initiated for suspected meningitis and was continued until the patient's death on day 16.
T13 1328-1446 Sentence denotes Daptomycin serum and CSF trough concentrations were 11.21 μg/mL and 0.52 μg/mL, respectively, prior to the third dose.
T14 1447-1542 Sentence denotes Lumbar puncture results were inconclusive and no further blood cultures were positive for MSSA.
T15 1543-1630 Sentence denotes Creatine kinase levels were normal prior to daptomycin therapy and were not reassessed.
T16 1631-1642 Sentence denotes DISCUSSION:
T17 1643-1777 Sentence denotes Daptomycin was initiated in our patient secondary to possible nafcillin-induced acute interstitial nephritis and relapsing bacteremia.
T18 1778-1904 Sentence denotes At a dose of 9 mg/kg, resultant penetration of 5% was higher than in previous reports, more consistent with inflamed meninges.
T19 1905-1917 Sentence denotes CONCLUSIONS:
T20 1918-2081 Sentence denotes High-dose daptomycin may be an alternative option for MSSA bacteremia with or without a CNS source in patients who have failed or cannot tolerate standard therapy.
T21 2082-2161 Sentence denotes Further clinical evaluation in patients with confirmed meningitis is warranted.
T1 0-102 Sentence denotes Cerebrospinal fluid penetration of high-dose daptomycin in suspected Staphylococcus aureus meningitis.
T2 103-113 Sentence denotes OBJECTIVE:
T3 114-337 Sentence denotes To report a case of methicillin-sensitive Staphylococcus aureus (MSSA) bacteremia with suspected MSSA meningitis treated with high-dose daptomycin assessed with concurrent serum and cerebrospinal fluid (CSF) concentrations.
T4 338-351 Sentence denotes CASE SUMMARY:
T5 352-507 Sentence denotes A 54-year-old male presented to the emergency department with generalized weakness and presumed health-care-associated pneumonia shown on chest radiograph.
T6 508-603 Sentence denotes Treatment was empirically initiated with vancomycin, levofloxacin, and piperacillin/tazobactam.
T7 604-663 Sentence denotes Blood cultures revealed S. aureus susceptible to oxacillin.
T8 664-728 Sentence denotes Empiric antibiotic treatment was narrowed to nafcillin on day 4.
T9 729-880 Sentence denotes On day 8, the patient developed acute renal failure (serum creatinine 1.9 mg/dL, increased from 1.2 mg/dL the previous day and 0.8 mg/dL on admission).
T10 881-1046 Sentence denotes The patient's Glasgow Coma Score was 3, with normal findings shown on computed tomography scan of the head 72 hours following an episode of cardiac arrest on day 10.
T11 1047-1177 Sentence denotes The patient experienced relapsing MSSA bacteremia on day 9, increasing the suspicion for a central nervous system (CNS) infection.
T12 1178-1327 Sentence denotes Nafcillin was discontinued and daptomycin 9 mg/kg daily was initiated for suspected meningitis and was continued until the patient's death on day 16.
T13 1328-1446 Sentence denotes Daptomycin serum and CSF trough concentrations were 11.21 μg/mL and 0.52 μg/mL, respectively, prior to the third dose.
T14 1447-1542 Sentence denotes Lumbar puncture results were inconclusive and no further blood cultures were positive for MSSA.
T15 1543-1630 Sentence denotes Creatine kinase levels were normal prior to daptomycin therapy and were not reassessed.
T16 1631-1642 Sentence denotes DISCUSSION:
T17 1643-1777 Sentence denotes Daptomycin was initiated in our patient secondary to possible nafcillin-induced acute interstitial nephritis and relapsing bacteremia.
T18 1778-1904 Sentence denotes At a dose of 9 mg/kg, resultant penetration of 5% was higher than in previous reports, more consistent with inflamed meninges.
T19 1905-1917 Sentence denotes CONCLUSIONS:
T20 1918-2081 Sentence denotes High-dose daptomycin may be an alternative option for MSSA bacteremia with or without a CNS source in patients who have failed or cannot tolerate standard therapy.
T21 2082-2161 Sentence denotes Further clinical evaluation in patients with confirmed meningitis is warranted.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
8153 45-55 ChemicalEntity denotes daptomycin MESH:D017576
8154 69-90 OrganismTaxon denotes Staphylococcus aureus NCBITaxon:1280
8155 91-101 DiseaseOrPhenotypicFeature denotes meningitis MESH:D008581
8156 134-145 ChemicalEntity denotes methicillin MESH:D008712
8157 156-177 OrganismTaxon denotes Staphylococcus aureus NCBITaxon:1280
8158 185-195 DiseaseOrPhenotypicFeature denotes bacteremia MESH:D016470
8159 216-226 DiseaseOrPhenotypicFeature denotes meningitis MESH:D008581
8160 250-260 ChemicalEntity denotes daptomycin MESH:D017576
8161 426-434 DiseaseOrPhenotypicFeature denotes weakness MESH:D018908
8162 471-480 DiseaseOrPhenotypicFeature denotes pneumonia MESH:D011014
8163 549-559 ChemicalEntity denotes vancomycin MESH:D014640
8164 561-573 ChemicalEntity denotes levofloxacin MESH:D064704
8165 579-602 ChemicalEntity denotes piperacillin/tazobactam MESH:D000077725
8166 628-637 OrganismTaxon denotes S. aureus NCBITaxon:1280
8167 653-662 ChemicalEntity denotes oxacillin MESH:D010068
8168 672-682 ChemicalEntity denotes antibiotic MESH:D000900
8169 709-718 ChemicalEntity denotes nafcillin MESH:D009254
8170 743-750 OrganismTaxon denotes patient NCBITaxon:9606
8171 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure MESH:D058186
8172 788-798 ChemicalEntity denotes creatinine MESH:D003404
8173 885-892 OrganismTaxon denotes patient NCBITaxon:9606
8174 903-907 DiseaseOrPhenotypicFeature denotes Coma MESH:D003128
8175 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest MESH:D006323
8176 1051-1058 OrganismTaxon denotes patient NCBITaxon:9606
8177 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia MESH:D016470
8178 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection MESH:D002494
8179 1178-1187 ChemicalEntity denotes Nafcillin MESH:D009254
8180 1209-1219 ChemicalEntity denotes daptomycin MESH:D017576
8181 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis MESH:D008581
8182 1301-1308 OrganismTaxon denotes patient NCBITaxon:9606
8183 1311-1316 DiseaseOrPhenotypicFeature denotes death MESH:D003643
8184 1328-1338 ChemicalEntity denotes Daptomycin MESH:D017576
8185 1543-1558 GeneOrGeneProduct denotes Creatine kinase NCBIGene:1152
8186 1587-1597 ChemicalEntity denotes daptomycin MESH:D017576
8187 1643-1653 ChemicalEntity denotes Daptomycin MESH:D017576
8188 1675-1682 OrganismTaxon denotes patient NCBITaxon:9606
8189 1705-1714 ChemicalEntity denotes nafcillin MESH:D009254
8190 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis MESH:D009395
8191 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia MESH:D016470
8192 1928-1938 ChemicalEntity denotes daptomycin MESH:D017576
8193 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia MESH:D016470
8194 2020-2028 OrganismTaxon denotes patients NCBITaxon:9606
8195 2113-2121 OrganismTaxon denotes patients NCBITaxon:9606
8196 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis MESH:D008581

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-102 Sentence denotes Cerebrospinal fluid penetration of high-dose daptomycin in suspected Staphylococcus aureus meningitis.
T2 103-113 Sentence denotes OBJECTIVE:
T3 114-337 Sentence denotes To report a case of methicillin-sensitive Staphylococcus aureus (MSSA) bacteremia with suspected MSSA meningitis treated with high-dose daptomycin assessed with concurrent serum and cerebrospinal fluid (CSF) concentrations.
T4 338-351 Sentence denotes CASE SUMMARY:
T5 352-507 Sentence denotes A 54-year-old male presented to the emergency department with generalized weakness and presumed health-care-associated pneumonia shown on chest radiograph.
T6 508-603 Sentence denotes Treatment was empirically initiated with vancomycin, levofloxacin, and piperacillin/tazobactam.
T7 604-663 Sentence denotes Blood cultures revealed S. aureus susceptible to oxacillin.
T8 664-728 Sentence denotes Empiric antibiotic treatment was narrowed to nafcillin on day 4.
T9 729-880 Sentence denotes On day 8, the patient developed acute renal failure (serum creatinine 1.9 mg/dL, increased from 1.2 mg/dL the previous day and 0.8 mg/dL on admission).
T10 881-1046 Sentence denotes The patient's Glasgow Coma Score was 3, with normal findings shown on computed tomography scan of the head 72 hours following an episode of cardiac arrest on day 10.
T11 1047-1177 Sentence denotes The patient experienced relapsing MSSA bacteremia on day 9, increasing the suspicion for a central nervous system (CNS) infection.
T12 1178-1327 Sentence denotes Nafcillin was discontinued and daptomycin 9 mg/kg daily was initiated for suspected meningitis and was continued until the patient's death on day 16.
T13 1328-1446 Sentence denotes Daptomycin serum and CSF trough concentrations were 11.21 μg/mL and 0.52 μg/mL, respectively, prior to the third dose.
T14 1447-1542 Sentence denotes Lumbar puncture results were inconclusive and no further blood cultures were positive for MSSA.
T15 1543-1630 Sentence denotes Creatine kinase levels were normal prior to daptomycin therapy and were not reassessed.
T16 1631-1642 Sentence denotes DISCUSSION:
T17 1643-1777 Sentence denotes Daptomycin was initiated in our patient secondary to possible nafcillin-induced acute interstitial nephritis and relapsing bacteremia.
T18 1778-1904 Sentence denotes At a dose of 9 mg/kg, resultant penetration of 5% was higher than in previous reports, more consistent with inflamed meninges.
T19 1905-1917 Sentence denotes CONCLUSIONS:
T20 1918-2081 Sentence denotes High-dose daptomycin may be an alternative option for MSSA bacteremia with or without a CNS source in patients who have failed or cannot tolerate standard therapy.
T21 2082-2161 Sentence denotes Further clinical evaluation in patients with confirmed meningitis is warranted.

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 69-90 OrganismTaxon denotes Staphylococcus aureus NCBItxid:1280
T2 156-177 OrganismTaxon denotes Staphylococcus aureus NCBItxid:1280
T3 903-907 OrganismTaxon denotes Coma NCBItxid:873064

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 91-101 DiseaseOrPhenotypicFeature denotes meningitis 0021108
T2 216-226 DiseaseOrPhenotypicFeature denotes meningitis 0021108
T3 471-480 DiseaseOrPhenotypicFeature denotes pneumonia 0005249
T4 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest 0000745
T5 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis 0021108
T6 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis 0001085
T7 1742-1751 DiseaseOrPhenotypicFeature denotes nephritis 0001166
T8 1895-1903 DiseaseOrPhenotypicFeature denotes meninges 0021108
T9 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis 0021108

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 35-39 GeneOrGeneProduct denotes high
T2 126-130 GeneOrGeneProduct denotes case
T3 179-183 GeneOrGeneProduct denotes MSSA
T4 211-215 GeneOrGeneProduct denotes MSSA
T5 240-244 GeneOrGeneProduct denotes high
T6 338-342 GeneOrGeneProduct denotes CASE
T7 357-361 GeneOrGeneProduct denotes year
T8 366-370 GeneOrGeneProduct denotes male
T9 426-434 GeneOrGeneProduct denotes weakness
T10 455-459 GeneOrGeneProduct denotes care
T11 534-543 GeneOrGeneProduct denotes initiated
T12 697-705 GeneOrGeneProduct denotes narrowed
T13 803-805 GeneOrGeneProduct denotes mg
T14 829-831 GeneOrGeneProduct denotes mg
T15 860-862 GeneOrGeneProduct denotes mg
T16 903-907 GeneOrGeneProduct denotes Coma
T17 933-941 GeneOrGeneProduct denotes findings
T18 1029-1035 GeneOrGeneProduct denotes arrest
T19 1081-1085 GeneOrGeneProduct denotes MSSA
T20 1146-1153 GeneOrGeneProduct denotes nervous
T21 1222-1224 GeneOrGeneProduct denotes mg
T22 1238-1251 GeneOrGeneProduct denotes initiated for
T23 1389-1391 GeneOrGeneProduct denotes mL
T24 1404-1406 GeneOrGeneProduct denotes mL
T25 1537-1541 GeneOrGeneProduct denotes MSSA
T26 1552-1558 GeneOrGeneProduct denotes kinase
T27 1658-1667 GeneOrGeneProduct denotes initiated
T28 1715-1722 GeneOrGeneProduct denotes induced
T29 1793-1795 GeneOrGeneProduct denotes mg
T30 1918-1922 GeneOrGeneProduct denotes High
T31 1972-1976 GeneOrGeneProduct denotes MSSA
T32 2055-2063 GeneOrGeneProduct denotes tolerate

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 35-39 GeneOrGeneProduct denotes high
T2 240-244 GeneOrGeneProduct denotes high
T3 1029-1035 GeneOrGeneProduct denotes arrest
T4 1146-1153 GeneOrGeneProduct denotes nervous
T5 1552-1558 GeneOrGeneProduct denotes kinase

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 91-101 DiseaseOrPhenotypicFeature denotes meningitis D008581
T2 185-195 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T3 216-226 DiseaseOrPhenotypicFeature denotes meningitis D008581
T4 388-397 DiseaseOrPhenotypicFeature denotes emergency D004630
T5 471-480 DiseaseOrPhenotypicFeature denotes pneumonia D011014
T6 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure D058186
T7 903-907 DiseaseOrPhenotypicFeature denotes Coma D003128
T8 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest D006323
T9 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T10 1161-1176 DiseaseOrPhenotypicFeature denotes (CNS) infection D002494
T11 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis D008581
T12 1311-1316 DiseaseOrPhenotypicFeature denotes death D003643
T13 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis D009395
T14 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T15 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T16 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis D008581

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 1543-1558 GeneOrGeneProduct denotes Creatine kinase

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 91-101 DiseaseOrPhenotypicFeature denotes meningitis 0021108|0004796
T3 146-155 DiseaseOrPhenotypicFeature denotes sensitive 0000605
T4 185-195 DiseaseOrPhenotypicFeature denotes bacteremia 0005229
T5 216-226 DiseaseOrPhenotypicFeature denotes meningitis 0021108|0004796
T7 471-480 DiseaseOrPhenotypicFeature denotes pneumonia 0005249
T8 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure 0002492
T9 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest 0000745
T10 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia 0005229
T11 1167-1176 DiseaseOrPhenotypicFeature denotes infection 0005550
T12 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis 0021108|0004796
T14 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis 0001085
T15 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia 0005229
T16 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia 0005229
T17 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis 0021108|0004796

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 91-101 DiseaseOrPhenotypicFeature denotes meningitis D008581
T2 185-195 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T3 216-226 DiseaseOrPhenotypicFeature denotes meningitis D008581
T4 388-397 DiseaseOrPhenotypicFeature denotes emergency D004630
T5 426-434 DiseaseOrPhenotypicFeature denotes weakness DISEASE
T6 471-480 DiseaseOrPhenotypicFeature denotes pneumonia D011014
T7 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure D058186
T8 903-907 DiseaseOrPhenotypicFeature denotes Coma D003128
T9 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest D006323
T10 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T11 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection DISEASE
T12 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis D008581
T13 1311-1316 DiseaseOrPhenotypicFeature denotes death D003643
T14 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis D009395
T15 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T16 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T17 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis D008581

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 91-101 DiseaseOrPhenotypicFeature denotes meningitis D008581
T2 185-195 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T3 216-226 DiseaseOrPhenotypicFeature denotes meningitis D008581
T4 426-434 DiseaseOrPhenotypicFeature denotes weakness DISEASE
T5 471-480 DiseaseOrPhenotypicFeature denotes pneumonia D011014
T6 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure D058186
T7 903-907 DiseaseOrPhenotypicFeature denotes Coma D003128
T8 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest D006323
T9 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T10 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection DISEASE
T11 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis D008581
T12 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis D009395
T13 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T14 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T15 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis D008581

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 45-55 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T2 134-145 ChemicalEntity denotes methicillin D008712|http://purl.obolibrary.org/obo/CHEBI_6827
T4 250-260 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T5 549-559 ChemicalEntity denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_76842|http://purl.obolibrary.org/obo/CHEBI_28001
T7 561-573 ChemicalEntity denotes levofloxacin D064704|http://purl.obolibrary.org/obo/CHEBI_63598
T9 579-602 ChemicalEntity denotes piperacillin/tazobactam D000077725
T10 653-662 ChemicalEntity denotes oxacillin D010068|http://purl.obolibrary.org/obo/CHEBI_7809
T12 672-682 ChemicalEntity denotes antibiotic ChemicalEntity
T13 709-718 ChemicalEntity denotes nafcillin D009254|http://purl.obolibrary.org/obo/CHEBI_7447
T15 788-798 ChemicalEntity denotes creatinine D003404|http://purl.obolibrary.org/obo/CHEBI_16737
T17 1178-1187 ChemicalEntity denotes Nafcillin D009254|http://purl.obolibrary.org/obo/CHEBI_7447
T19 1209-1219 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T20 1328-1338 ChemicalEntity denotes Daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T21 1543-1558 ChemicalEntity denotes Creatine kinase D003402
T22 1587-1597 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T23 1643-1653 ChemicalEntity denotes Daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T24 1705-1714 ChemicalEntity denotes nafcillin D009254|http://purl.obolibrary.org/obo/CHEBI_7447
T26 1928-1938 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 69-90 OrganismTaxon denotes Staphylococcus aureus
T2 156-177 OrganismTaxon denotes Staphylococcus aureus
T3 743-750 OrganismTaxon denotes patient
T4 903-907 OrganismTaxon denotes Coma
T5 1051-1058 OrganismTaxon denotes patient
T6 1675-1682 OrganismTaxon denotes patient
T7 2020-2028 OrganismTaxon denotes patients
T8 2113-2121 OrganismTaxon denotes patients

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T26 1928-1938 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T24 1705-1714 ChemicalEntity denotes nafcillin http://purl.obolibrary.org/obo/CHEBI_7447|D009254
T23 1643-1653 ChemicalEntity denotes Daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T22 1587-1597 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T21 1543-1558 ChemicalEntity denotes Creatine kinase D003402
T20 1328-1338 ChemicalEntity denotes Daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T19 1209-1219 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T17 1178-1187 ChemicalEntity denotes Nafcillin http://purl.obolibrary.org/obo/CHEBI_7447|D009254
T15 788-798 ChemicalEntity denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737|D003404
T13 709-718 ChemicalEntity denotes nafcillin http://purl.obolibrary.org/obo/CHEBI_7447|D009254
T12 672-682 ChemicalEntity denotes antibiotic ChemicalEntity
T10 653-662 ChemicalEntity denotes oxacillin http://purl.obolibrary.org/obo/CHEBI_7809|D010068
T9 579-602 ChemicalEntity denotes piperacillin/tazobactam D000077725
T7 561-573 ChemicalEntity denotes levofloxacin http://purl.obolibrary.org/obo/CHEBI_63598|D064704
T5 549-559 ChemicalEntity denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842
T4 250-260 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T2 134-145 ChemicalEntity denotes methicillin http://purl.obolibrary.org/obo/CHEBI_6827|D008712
T1 45-55 ChemicalEntity denotes daptomycin http://purl.obolibrary.org/obo/CHEBI_600103
T79386 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T27497 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis D008581
T14 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T47244 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T90324 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis D009395
T11 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis D008581
T29854 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection DISEASE
T133 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T8 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest D006323
T11273 903-907 DiseaseOrPhenotypicFeature denotes Coma D003128
T6 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure D058186
T52738 471-480 DiseaseOrPhenotypicFeature denotes pneumonia D011014
T56202 426-434 DiseaseOrPhenotypicFeature denotes weakness DISEASE
T3 216-226 DiseaseOrPhenotypicFeature denotes meningitis D008581
T80482 185-195 DiseaseOrPhenotypicFeature denotes bacteremia D016470
T57538 91-101 DiseaseOrPhenotypicFeature denotes meningitis D008581
T48213 2113-2121 OrganismTaxon denotes patients
T90523 2020-2028 OrganismTaxon denotes patients
T54569 1675-1682 OrganismTaxon denotes patient
T30825 1051-1058 OrganismTaxon denotes patient
T33489 903-907 OrganismTaxon denotes Coma
T3023 743-750 OrganismTaxon denotes patient
T85800 156-177 OrganismTaxon denotes Staphylococcus aureus
T92967 69-90 OrganismTaxon denotes Staphylococcus aureus

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 216-226 HP_0002858 denotes meningitis

Allie

Id Subject Object Predicate Lexical cue
SS1_20959502_2_0 134-177 expanded denotes methicillin-sensitive Staphylococcus aureus
SS2_20959502_2_0 179-183 abbr denotes MSSA
SS1_20959502_2_1 296-315 expanded denotes cerebrospinal fluid
SS2_20959502_2_1 317-320 abbr denotes CSF
SS1_20959502_10_0 1138-1160 expanded denotes central nervous system
SS2_20959502_10_0 1162-1165 abbr denotes CNS
AE1_20959502_2_0 SS1_20959502_2_0 SS2_20959502_2_0 abbreviatedTo methicillin-sensitive Staphylococcus aureus,MSSA
AE1_20959502_2_1 SS1_20959502_2_1 SS2_20959502_2_1 abbreviatedTo cerebrospinal fluid,CSF
AE1_20959502_10_0 SS1_20959502_10_0 SS2_20959502_10_0 abbreviatedTo central nervous system,CNS

PubCasesHPO

Id Subject Object Predicate Lexical cue
TI1 91-101 HP:0001287 denotes meningitis
AB1 216-226 HP:0001287 denotes meningitis
AB2 471-480 HP:0002090 denotes pneumonia
AB3 903-907 HP:0001259 denotes Coma
AB4 1021-1035 HP:0001695 denotes cardiac arrest
AB5 1162-1176 HP:0011450 denotes CNS) infection
AB6 1262-1272 HP:0001287 denotes meningitis
AB7 1742-1751 HP:0000123 denotes nephritis
AB8 2137-2147 HP:0001287 denotes meningitis

biored-valid

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 134-145 ChemicalEntity denotes methicillin
T5 156-177 OrganismTaxon denotes Staphylococcus aureus
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 426-434 DiseaseOrPhenotypicFeature denotes weakness
T10 471-480 DiseaseOrPhenotypicFeature denotes pneumonia
T11 549-559 ChemicalEntity denotes vancomycin
T12 561-573 ChemicalEntity denotes levofloxacin
T13 579-602 ChemicalEntity denotes piperacillin/tazobactam
T14 628-637 OrganismTaxon denotes S. aureus
T15 653-662 ChemicalEntity denotes oxacillin
T16 672-682 ChemicalEntity denotes antibiotic
T17 709-718 ChemicalEntity denotes nafcillin
T18 743-750 OrganismTaxon denotes patient
T19 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T20 788-798 ChemicalEntity denotes creatinine
T21 885-892 OrganismTaxon denotes patient
T22 903-907 DiseaseOrPhenotypicFeature denotes Coma
T23 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T24 1051-1058 OrganismTaxon denotes patient
T25 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T26 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection
T27 1178-1187 ChemicalEntity denotes Nafcillin
T28 1209-1219 ChemicalEntity denotes daptomycin
T29 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T30 1301-1308 OrganismTaxon denotes patient
T31 1311-1316 DiseaseOrPhenotypicFeature denotes death
T32 1328-1338 ChemicalEntity denotes Daptomycin
T33 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T34 1587-1597 ChemicalEntity denotes daptomycin
T35 1643-1653 ChemicalEntity denotes Daptomycin
T36 1675-1682 OrganismTaxon denotes patient
T37 1705-1714 ChemicalEntity denotes nafcillin
T38 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis
T39 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T40 1928-1938 ChemicalEntity denotes daptomycin
T41 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia
T42 2020-2028 OrganismTaxon denotes patients
T43 2113-2121 OrganismTaxon denotes patients
T44 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-deepseek-nr-ng

Id Subject Object Predicate Lexical cue
T1 0-19 ChemicalEntity denotes Cerebrospinal fluid
T2 45-55 ChemicalEntity denotes daptomycin
T3 69-90 OrganismTaxon denotes Staphylococcus aureus
T4 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T5 134-177 OrganismTaxon denotes methicillin-sensitive Staphylococcus aureus
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 286-291 ChemicalEntity denotes serum
T10 296-315 ChemicalEntity denotes cerebrospinal fluid
T11 317-320 ChemicalEntity denotes CSF
T12 471-480 DiseaseOrPhenotypicFeature denotes pneumonia
T13 549-559 ChemicalEntity denotes vancomycin
T14 561-573 ChemicalEntity denotes levofloxacin
T15 579-602 ChemicalEntity denotes piperacillin/tazobactam
T16 628-637 OrganismTaxon denotes S. aureus
T17 653-662 ChemicalEntity denotes oxacillin
T18 709-718 ChemicalEntity denotes nafcillin
T19 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T20 782-798 ChemicalEntity denotes serum creatinine
T21 895-913 DiseaseOrPhenotypicFeature denotes Glasgow Coma Score
T22 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T23 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T24 1167-1176 DiseaseOrPhenotypicFeature denotes infection
T25 1178-1187 ChemicalEntity denotes Nafcillin
T26 1209-1219 ChemicalEntity denotes daptomycin
T27 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T28 1349-1352 ChemicalEntity denotes CSF
T29 1543-1551 ChemicalEntity denotes Creatine
T30 1552-1558 ChemicalEntity denotes kinase
T31 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T32 1895-1903 DiseaseOrPhenotypicFeature denotes meninges

biored-valid-deepseek-nr-g

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 156-177 OrganismTaxon denotes Staphylococcus aureus
T4 179-183 OrganismTaxon denotes MSSA
T5 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T6 211-215 OrganismTaxon denotes MSSA
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 549-559 ChemicalEntity denotes vancomycin
T10 561-573 ChemicalEntity denotes levofloxacin
T11 579-602 ChemicalEntity denotes piperacillin/tazobactam
T12 628-637 OrganismTaxon denotes S. aureus
T13 653-662 ChemicalEntity denotes oxacillin
T14 709-718 ChemicalEntity denotes nafcillin
T15 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T16 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T17 1081-1085 OrganismTaxon denotes MSSA
T18 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T19 1167-1176 DiseaseOrPhenotypicFeature denotes infection
T20 1209-1219 ChemicalEntity denotes daptomycin
T21 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T22 1311-1316 DiseaseOrPhenotypicFeature denotes death
T23 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis

biored-valid-deepseek-r-ng

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 179-183 OrganismTaxon denotes MSSA
T5 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T6 549-559 ChemicalEntity denotes vancomycin
T7 561-573 ChemicalEntity denotes levofloxacin
T8 579-602 ChemicalEntity denotes piperacillin/tazobactam
T9 628-637 OrganismTaxon denotes S. aureus
T10 653-662 ChemicalEntity denotes oxacillin
T11 709-718 ChemicalEntity denotes nafcillin
T12 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T13 788-798 ChemicalEntity denotes creatinine
T14 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T15 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis

biored-valid-deepseek-r-g

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 156-177 OrganismTaxon denotes Staphylococcus aureus
T5 179-183 OrganismTaxon denotes MSSA
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 471-480 DiseaseOrPhenotypicFeature denotes pneumonia
T10 549-559 ChemicalEntity denotes vancomycin
T11 561-573 ChemicalEntity denotes levofloxacin
T12 579-602 ChemicalEntity denotes piperacillin/tazobactam
T13 628-637 OrganismTaxon denotes S. aureus
T14 653-662 ChemicalEntity denotes oxacillin
T15 709-718 ChemicalEntity denotes nafcillin
T16 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T17 788-798 ChemicalEntity denotes creatinine
T18 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T19 1081-1085 OrganismTaxon denotes MSSA
T20 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T21 1167-1176 DiseaseOrPhenotypicFeature denotes infection
T22 1209-1219 ChemicalEntity denotes daptomycin
T23 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T24 1311-1316 DiseaseOrPhenotypicFeature denotes death
T25 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T26 1587-1597 ChemicalEntity denotes daptomycin
T27 1705-1714 ChemicalEntity denotes nafcillin
T28 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T29 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T30 1972-1976 OrganismTaxon denotes MSSA
T31 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia
T32 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gemini-nr-ng

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-101 DiseaseOrPhenotypicFeature denotes Staphylococcus aureus meningitis
T3 134-177 OrganismTaxon denotes methicillin-sensitive Staphylococcus aureus
T4 179-183 OrganismTaxon denotes MSSA
T5 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T6 211-226 DiseaseOrPhenotypicFeature denotes MSSA meningitis
T7 250-260 ChemicalEntity denotes daptomycin
T8 414-434 DiseaseOrPhenotypicFeature denotes generalized weakness
T9 448-480 DiseaseOrPhenotypicFeature denotes health-care-associated pneumonia
T10 549-559 ChemicalEntity denotes vancomycin
T11 561-573 ChemicalEntity denotes levofloxacin
T12 579-602 ChemicalEntity denotes piperacillin/tazobactam
T13 628-637 OrganismTaxon denotes S. aureus
T14 653-662 ChemicalEntity denotes oxacillin
T15 709-718 ChemicalEntity denotes nafcillin
T16 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T17 1071-1096 DiseaseOrPhenotypicFeature denotes relapsing MSSA bacteremia
T18 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection
T19 1178-1187 ChemicalEntity denotes Nafcillin
T20 1209-1219 ChemicalEntity denotes daptomycin
T21 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T22 1328-1338 ChemicalEntity denotes Daptomycin
T23 1537-1541 OrganismTaxon denotes MSSA
T24 1587-1597 ChemicalEntity denotes daptomycin
T25 1643-1653 ChemicalEntity denotes Daptomycin
T26 1705-1751 DiseaseOrPhenotypicFeature denotes nafcillin-induced acute interstitial nephritis
T27 1756-1776 DiseaseOrPhenotypicFeature denotes relapsing bacteremia
T28 1886-1903 DiseaseOrPhenotypicFeature denotes inflamed meninges
T29 1972-1987 DiseaseOrPhenotypicFeature denotes MSSA bacteremia
T30 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gemini-r-ng

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 134-177 OrganismTaxon denotes methicillin-sensitive Staphylococcus aureus
T5 179-183 OrganismTaxon denotes MSSA
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 414-434 DiseaseOrPhenotypicFeature denotes generalized weakness
T10 448-480 DiseaseOrPhenotypicFeature denotes health-care-associated pneumonia
T11 549-559 ChemicalEntity denotes vancomycin
T12 561-573 ChemicalEntity denotes levofloxacin
T13 579-602 ChemicalEntity denotes piperacillin/tazobactam
T14 628-637 OrganismTaxon denotes S. aureus
T15 653-662 ChemicalEntity denotes oxacillin
T16 709-718 ChemicalEntity denotes nafcillin
T17 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T18 782-798 ChemicalEntity denotes serum creatinine
T19 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T20 1081-1085 OrganismTaxon denotes MSSA
T21 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T22 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection
T23 1178-1187 ChemicalEntity denotes Nafcillin
T24 1209-1219 ChemicalEntity denotes daptomycin
T25 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T26 1328-1338 ChemicalEntity denotes Daptomycin
T27 1537-1541 OrganismTaxon denotes MSSA
T28 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T29 1587-1597 ChemicalEntity denotes daptomycin
T30 1705-1714 ChemicalEntity denotes nafcillin
T31 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T32 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T33 1886-1903 DiseaseOrPhenotypicFeature denotes inflamed meninges

biored-valid-gemini-r-g

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-101 DiseaseOrPhenotypicFeature denotes Staphylococcus aureus meningitis
T3 134-195 DiseaseOrPhenotypicFeature denotes methicillin-sensitive Staphylococcus aureus (MSSA) bacteremia
T4 211-226 DiseaseOrPhenotypicFeature denotes MSSA meningitis
T5 250-260 ChemicalEntity denotes daptomycin
T6 426-434 DiseaseOrPhenotypicFeature denotes weakness
T7 448-480 DiseaseOrPhenotypicFeature denotes health-care-associated pneumonia
T8 549-559 ChemicalEntity denotes vancomycin
T9 561-573 ChemicalEntity denotes levofloxacin
T10 579-602 ChemicalEntity denotes piperacillin/tazobactam
T11 628-637 OrganismTaxon denotes S. aureus
T12 653-662 ChemicalEntity denotes oxacillin
T13 709-718 ChemicalEntity denotes nafcillin
T14 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T15 788-798 ChemicalEntity denotes creatinine
T16 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T17 1081-1096 DiseaseOrPhenotypicFeature denotes MSSA bacteremia
T18 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection
T19 1178-1187 ChemicalEntity denotes Nafcillin
T20 1209-1219 ChemicalEntity denotes daptomycin
T21 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T22 1328-1338 ChemicalEntity denotes Daptomycin
T23 1537-1541 OrganismTaxon denotes MSSA
T24 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T25 1587-1597 ChemicalEntity denotes daptomycin
T26 1705-1751 DiseaseOrPhenotypicFeature denotes nafcillin-induced acute interstitial nephritis
T27 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T28 1886-1903 DiseaseOrPhenotypicFeature denotes inflamed meninges
T29 1972-1987 DiseaseOrPhenotypicFeature denotes MSSA bacteremia
T30 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gpt-nr-ng

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 156-177 OrganismTaxon denotes Staphylococcus aureus
T5 179-183 OrganismTaxon denotes MSSA
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 414-434 DiseaseOrPhenotypicFeature denotes generalized weakness
T10 471-480 DiseaseOrPhenotypicFeature denotes pneumonia
T11 549-559 ChemicalEntity denotes vancomycin
T12 561-573 ChemicalEntity denotes levofloxacin
T13 579-602 ChemicalEntity denotes piperacillin/tazobactam
T14 628-637 OrganismTaxon denotes S. aureus
T15 653-662 ChemicalEntity denotes oxacillin
T16 709-718 ChemicalEntity denotes nafcillin
T17 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T18 788-798 ChemicalEntity denotes creatinine
T19 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T20 1081-1085 OrganismTaxon denotes MSSA
T21 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T22 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection
T23 1178-1187 ChemicalEntity denotes Nafcillin
T24 1209-1219 ChemicalEntity denotes daptomycin
T25 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T26 1328-1338 ChemicalEntity denotes Daptomycin
T27 1537-1541 OrganismTaxon denotes MSSA
T28 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T29 1587-1597 ChemicalEntity denotes daptomycin
T30 1643-1653 ChemicalEntity denotes Daptomycin
T31 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T32 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T33 1928-1938 ChemicalEntity denotes daptomycin
T34 1972-1976 OrganismTaxon denotes MSSA
T35 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia
T36 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gpt-r-g

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 156-177 OrganismTaxon denotes Staphylococcus aureus
T5 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T6 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T7 250-260 ChemicalEntity denotes daptomycin
T8 471-480 DiseaseOrPhenotypicFeature denotes pneumonia
T9 549-559 ChemicalEntity denotes vancomycin
T10 561-573 ChemicalEntity denotes levofloxacin
T11 579-602 ChemicalEntity denotes piperacillin/tazobactam
T12 628-637 OrganismTaxon denotes S. aureus
T13 653-662 ChemicalEntity denotes oxacillin
T14 709-718 ChemicalEntity denotes nafcillin
T15 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T16 788-798 ChemicalEntity denotes creatinine
T17 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T18 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T19 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection
T20 1178-1187 ChemicalEntity denotes Nafcillin
T21 1209-1219 ChemicalEntity denotes daptomycin
T22 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T23 1311-1316 DiseaseOrPhenotypicFeature denotes death
T24 1328-1338 ChemicalEntity denotes Daptomycin
T25 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T26 1587-1597 ChemicalEntity denotes daptomycin
T27 1643-1653 ChemicalEntity denotes Daptomycin
T28 1705-1714 ChemicalEntity denotes nafcillin
T29 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T30 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T31 1928-1938 ChemicalEntity denotes daptomycin
T32 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia
T33 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gpt-r-ng

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 134-145 ChemicalEntity denotes methicillin
T5 156-177 OrganismTaxon denotes Staphylococcus aureus
T6 179-183 OrganismTaxon denotes MSSA
T7 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T8 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T9 250-260 ChemicalEntity denotes daptomycin
T10 414-434 DiseaseOrPhenotypicFeature denotes generalized weakness
T11 448-480 DiseaseOrPhenotypicFeature denotes health-care-associated pneumonia
T12 549-559 ChemicalEntity denotes vancomycin
T13 561-573 ChemicalEntity denotes levofloxacin
T14 579-602 ChemicalEntity denotes piperacillin/tazobactam
T15 628-637 OrganismTaxon denotes S. aureus
T16 653-662 ChemicalEntity denotes oxacillin
T17 709-718 ChemicalEntity denotes nafcillin
T18 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T19 788-798 ChemicalEntity denotes creatinine
T20 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T21 1081-1085 OrganismTaxon denotes MSSA
T22 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T23 1138-1176 DiseaseOrPhenotypicFeature denotes central nervous system (CNS) infection
T24 1178-1187 ChemicalEntity denotes Nafcillin
T25 1209-1219 ChemicalEntity denotes daptomycin
T26 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T27 1328-1338 ChemicalEntity denotes Daptomycin
T28 1537-1541 OrganismTaxon denotes MSSA
T29 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T30 1587-1597 ChemicalEntity denotes daptomycin
T31 1643-1653 ChemicalEntity denotes Daptomycin
T32 1705-1714 ChemicalEntity denotes nafcillin
T33 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T34 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T35 1928-1938 ChemicalEntity denotes daptomycin
T36 1972-1976 OrganismTaxon denotes MSSA
T37 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia
T38 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gpt-nr-g

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 156-177 OrganismTaxon denotes Staphylococcus aureus
T5 179-183 OrganismTaxon denotes MSSA
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 471-480 DiseaseOrPhenotypicFeature denotes pneumonia
T10 549-559 ChemicalEntity denotes vancomycin
T11 561-573 ChemicalEntity denotes levofloxacin
T12 579-602 ChemicalEntity denotes piperacillin/tazobactam
T13 628-637 OrganismTaxon denotes S. aureus
T14 653-662 ChemicalEntity denotes oxacillin
T15 709-718 ChemicalEntity denotes nafcillin
T16 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T17 788-798 ChemicalEntity denotes creatinine
T18 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T19 1081-1085 OrganismTaxon denotes MSSA
T20 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T21 1167-1176 DiseaseOrPhenotypicFeature denotes infection
T22 1178-1187 ChemicalEntity denotes Nafcillin
T23 1209-1219 ChemicalEntity denotes daptomycin
T24 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T25 1311-1316 DiseaseOrPhenotypicFeature denotes death
T26 1328-1338 ChemicalEntity denotes Daptomycin
T27 1537-1541 OrganismTaxon denotes MSSA
T28 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T29 1587-1597 ChemicalEntity denotes daptomycin
T30 1643-1653 ChemicalEntity denotes Daptomycin
T31 1705-1714 ChemicalEntity denotes nafcillin
T32 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T33 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T34 1928-1938 ChemicalEntity denotes daptomycin
T35 1972-1976 OrganismTaxon denotes MSSA
T36 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia
T37 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gemini-nr-g

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 134-177 OrganismTaxon denotes methicillin-sensitive Staphylococcus aureus
T5 179-183 OrganismTaxon denotes MSSA
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 448-480 DiseaseOrPhenotypicFeature denotes health-care-associated pneumonia
T10 549-559 ChemicalEntity denotes vancomycin
T11 561-573 ChemicalEntity denotes levofloxacin
T12 579-602 ChemicalEntity denotes piperacillin/tazobactam
T13 628-637 OrganismTaxon denotes S. aureus
T14 653-662 ChemicalEntity denotes oxacillin
T15 709-718 ChemicalEntity denotes nafcillin
T16 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T17 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T18 1081-1085 OrganismTaxon denotes MSSA
T19 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T20 1167-1176 DiseaseOrPhenotypicFeature denotes infection
T21 1178-1187 ChemicalEntity denotes Nafcillin
T22 1209-1219 ChemicalEntity denotes daptomycin
T23 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T24 1328-1338 ChemicalEntity denotes Daptomycin
T25 1537-1541 OrganismTaxon denotes MSSA
T26 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T27 1587-1597 ChemicalEntity denotes daptomycin
T28 1705-1728 DiseaseOrPhenotypicFeature denotes nafcillin-induced acute
T29 1729-1751 DiseaseOrPhenotypicFeature denotes interstitial nephritis
T30 1756-1776 DiseaseOrPhenotypicFeature denotes relapsing bacteremia
T31 2006-2009 DiseaseOrPhenotypicFeature denotes CNS
T32 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gpt-r-m

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 134-145 ChemicalEntity denotes methicillin
T5 156-177 OrganismTaxon denotes Staphylococcus aureus
T6 179-183 OrganismTaxon denotes MSSA
T7 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T8 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T9 250-260 ChemicalEntity denotes daptomycin
T10 426-434 DiseaseOrPhenotypicFeature denotes weakness
T11 448-480 DiseaseOrPhenotypicFeature denotes health-care-associated pneumonia
T12 549-559 ChemicalEntity denotes vancomycin
T13 561-573 ChemicalEntity denotes levofloxacin
T14 579-602 ChemicalEntity denotes piperacillin/tazobactam
T15 628-637 OrganismTaxon denotes S. aureus
T16 653-662 ChemicalEntity denotes oxacillin
T17 709-718 ChemicalEntity denotes nafcillin
T18 743-750 OrganismTaxon denotes patient
T19 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T20 788-798 ChemicalEntity denotes creatinine
T21 885-892 OrganismTaxon denotes patient
T22 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T23 1051-1058 OrganismTaxon denotes patient
T24 1081-1085 OrganismTaxon denotes MSSA
T25 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T26 1167-1176 DiseaseOrPhenotypicFeature denotes infection
T27 1178-1187 ChemicalEntity denotes Nafcillin
T28 1209-1219 ChemicalEntity denotes daptomycin
T29 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T30 1301-1308 OrganismTaxon denotes patient
T31 1311-1316 DiseaseOrPhenotypicFeature denotes death
T32 1328-1338 ChemicalEntity denotes Daptomycin
T33 1537-1541 OrganismTaxon denotes MSSA
T34 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T35 1587-1597 ChemicalEntity denotes daptomycin
T36 1643-1653 ChemicalEntity denotes Daptomycin
T37 1675-1682 OrganismTaxon denotes patient
T38 1705-1714 ChemicalEntity denotes nafcillin
T39 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T40 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T41 1928-1938 ChemicalEntity denotes daptomycin
T42 1972-1976 OrganismTaxon denotes MSSA
T43 1977-1987 DiseaseOrPhenotypicFeature denotes bacteremia
T44 2020-2028 OrganismTaxon denotes patients
T45 2113-2121 OrganismTaxon denotes patients
T46 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-gemini-r-m

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 134-177 OrganismTaxon denotes methicillin-sensitive Staphylococcus aureus
T5 179-183 OrganismTaxon denotes MSSA
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 366-370 OrganismTaxon denotes male
T10 414-434 DiseaseOrPhenotypicFeature denotes generalized weakness
T11 448-480 DiseaseOrPhenotypicFeature denotes health-care-associated pneumonia
T12 549-559 ChemicalEntity denotes vancomycin
T13 561-573 ChemicalEntity denotes levofloxacin
T14 579-602 ChemicalEntity denotes piperacillin/tazobactam
T15 628-637 OrganismTaxon denotes S. aureus
T16 653-662 ChemicalEntity denotes oxacillin
T17 709-718 ChemicalEntity denotes nafcillin
T18 743-750 OrganismTaxon denotes patient
T19 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T20 788-798 ChemicalEntity denotes creatinine
T21 885-894 OrganismTaxon denotes patient's
T22 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T23 1081-1085 OrganismTaxon denotes MSSA
T24 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T25 1167-1176 DiseaseOrPhenotypicFeature denotes infection
T26 1178-1187 ChemicalEntity denotes Nafcillin
T27 1209-1219 ChemicalEntity denotes daptomycin
T28 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T29 1301-1310 OrganismTaxon denotes patient's
T30 1311-1316 DiseaseOrPhenotypicFeature denotes death
T31 1328-1338 ChemicalEntity denotes Daptomycin
T32 1537-1541 OrganismTaxon denotes MSSA
T33 1543-1558 GeneOrGeneProduct denotes Creatine kinase
T34 1587-1597 ChemicalEntity denotes daptomycin
T35 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis
T36 1766-1776 DiseaseOrPhenotypicFeature denotes bacteremia
T37 1886-1903 DiseaseOrPhenotypicFeature denotes inflamed meninges
T38 2020-2028 OrganismTaxon denotes patients
T39 2137-2147 DiseaseOrPhenotypicFeature denotes meningitis

biored-valid-deepseek-r-m

Id Subject Object Predicate Lexical cue
T1 45-55 ChemicalEntity denotes daptomycin
T2 69-90 OrganismTaxon denotes Staphylococcus aureus
T3 91-101 DiseaseOrPhenotypicFeature denotes meningitis
T4 134-177 OrganismTaxon denotes methicillin-sensitive Staphylococcus aureus
T5 179-183 OrganismTaxon denotes MSSA
T6 185-195 DiseaseOrPhenotypicFeature denotes bacteremia
T7 216-226 DiseaseOrPhenotypicFeature denotes meningitis
T8 250-260 ChemicalEntity denotes daptomycin
T9 426-434 DiseaseOrPhenotypicFeature denotes weakness
T10 471-480 DiseaseOrPhenotypicFeature denotes pneumonia
T11 549-559 ChemicalEntity denotes vancomycin
T12 561-573 ChemicalEntity denotes levofloxacin
T13 579-602 ChemicalEntity denotes piperacillin/tazobactam
T14 628-637 OrganismTaxon denotes S. aureus
T15 653-662 ChemicalEntity denotes oxacillin
T16 709-718 ChemicalEntity denotes nafcillin
T17 761-780 DiseaseOrPhenotypicFeature denotes acute renal failure
T18 788-798 ChemicalEntity denotes creatinine
T19 1021-1035 DiseaseOrPhenotypicFeature denotes cardiac arrest
T20 1081-1085 OrganismTaxon denotes MSSA
T21 1086-1096 DiseaseOrPhenotypicFeature denotes bacteremia
T22 1167-1176 DiseaseOrPhenotypicFeature denotes infection
T23 1209-1219 ChemicalEntity denotes daptomycin
T24 1262-1272 DiseaseOrPhenotypicFeature denotes meningitis
T25 1311-1316 DiseaseOrPhenotypicFeature denotes death
T26 1537-1541 OrganismTaxon denotes MSSA
T27 1723-1751 DiseaseOrPhenotypicFeature denotes acute interstitial nephritis