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PubMed:20846357 / 790-1014 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T11 0-224 Sentence denotes The clinical features included hearing impairment, ichthyosiform erythroderma with hyperkeratotic plaques, palmoplantar keratoderma, alopecia of the scalp and eyelashes, and a thick vernix caseosa-like covering of the scalp.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
8064 31-49 DiseaseOrPhenotypicFeature denotes hearing impairment MESH:D034381
8065 51-77 DiseaseOrPhenotypicFeature denotes ichthyosiform erythroderma MESH:D016113
8066 107-131 DiseaseOrPhenotypicFeature denotes palmoplantar keratoderma MESH:D007645
8067 133-168 DiseaseOrPhenotypicFeature denotes alopecia of the scalp and eyelashes MESH:D000505

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T10 133-141 DiseaseOrPhenotypicFeature denotes alopecia 0004907

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T26 133-141 GeneOrGeneProduct denotes alopecia
T27 176-181 GeneOrGeneProduct denotes thick
T28 197-201 GeneOrGeneProduct denotes like

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T15 133-141 GeneOrGeneProduct denotes alopecia
T16 176-181 GeneOrGeneProduct denotes thick
T17 197-201 GeneOrGeneProduct denotes like

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T4 31-49 DiseaseOrPhenotypicFeature denotes hearing impairment D034381
T5 65-77 DiseaseOrPhenotypicFeature denotes erythroderma D003873
T6 107-131 DiseaseOrPhenotypicFeature denotes palmoplantar keratoderma D007645
T7 133-141 DiseaseOrPhenotypicFeature denotes alopecia D000505

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T6 176-181 GeneOrGeneProduct denotes thick

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T5 31-49 DiseaseOrPhenotypicFeature denotes hearing impairment 0005365
T6 51-77 DiseaseOrPhenotypicFeature denotes ichthyosiform erythroderma 0019306
T7 107-131 DiseaseOrPhenotypicFeature denotes palmoplantar keratoderma 0006590
T8 133-141 DiseaseOrPhenotypicFeature denotes alopecia 0004907

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T5 31-49 DiseaseOrPhenotypicFeature denotes hearing impairment D034381
T6 65-77 DiseaseOrPhenotypicFeature denotes erythroderma D003873
T7 107-131 DiseaseOrPhenotypicFeature denotes palmoplantar keratoderma D007645
T8 133-168 DiseaseOrPhenotypicFeature denotes alopecia of the scalp and eyelashes DISEASE

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T5 31-49 DiseaseOrPhenotypicFeature denotes hearing impairment D034381
T6 65-77 DiseaseOrPhenotypicFeature denotes erythroderma D003873
T7 107-131 DiseaseOrPhenotypicFeature denotes palmoplantar keratoderma D007645
T8 133-168 DiseaseOrPhenotypicFeature denotes alopecia of the scalp and eyelashes DISEASE

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T93867 176-181 GeneOrGeneProduct denotes thick
T345 133-168 DiseaseOrPhenotypicFeature denotes alopecia of the scalp and eyelashes DISEASE
T27266 107-131 DiseaseOrPhenotypicFeature denotes palmoplantar keratoderma D007645
T44801 65-77 DiseaseOrPhenotypicFeature denotes erythroderma D003873
T16818 31-49 DiseaseOrPhenotypicFeature denotes hearing impairment D034381

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T11 0-224 Sentence denotes The clinical features included hearing impairment, ichthyosiform erythroderma with hyperkeratotic plaques, palmoplantar keratoderma, alopecia of the scalp and eyelashes, and a thick vernix caseosa-like covering of the scalp.
T11 0-224 Sentence denotes The clinical features included hearing impairment, ichthyosiform erythroderma with hyperkeratotic plaques, palmoplantar keratoderma, alopecia of the scalp and eyelashes, and a thick vernix caseosa-like covering of the scalp.

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T3 149-154 http://purl.obolibrary.org/obo/UBERON_0000403 denotes scalp
PD-UBERON-AE-B_T4 218-223 http://purl.obolibrary.org/obo/UBERON_0000403 denotes scalp
PD-UBERON-AE-B_T5 159-168 http://purl.obolibrary.org/obo/UBERON_0001702 denotes eyelashes
PD-UBERON-AE-B_T6 182-196 http://purl.obolibrary.org/obo/UBERON_0007108 denotes vernix caseosa

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T3 149-154 http://purl.obolibrary.org/obo/UBERON_0000403 denotes scalp
PD-UBERON-AE-B_T4 218-223 http://purl.obolibrary.org/obo/UBERON_0000403 denotes scalp
PD-UBERON-AE-B_T5 159-168 http://purl.obolibrary.org/obo/UBERON_0001702 denotes eyelashes
PD-UBERON-AE-B_T6 182-196 http://purl.obolibrary.org/obo/UBERON_0007108 denotes vernix caseosa

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB3 31-49 HP:0000365 denotes hearing impairment
AB4 65-77 HP:0001019 denotes erythroderma
AB5 107-131 HP:0000982 denotes palmoplantar keratoderma
AB6 133-141 HP:0001596 denotes alopecia