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PubMed:20801540 / 0-113 JSON TXT

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LitCoin-sentences

Id	Subject	Object	Predicate	Lexical cue
T1	0-113	Sentence	denotes	Hepatic but not brain iron is rapidly chelated by deferasirox in aceruloplasminemia due to a novel gene mutation.

LitCoin-entities

Id	Subject	Object	Predicate	Lexical cue	db_id
7986	22-26	ChemicalEntity	denotes	iron	MESH:D007501
7987	50-61	ChemicalEntity	denotes	deferasirox	MESH:D000077588
7988	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia	MESH:C536004

LitCoin_Mondo

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	0-7	DiseaseOrPhenotypicFeature	denotes	Hepatic	0002251
T2	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia	0011426

LitCoin-GeneOrGeneProduct-v0

Id	Subject	Object	Predicate	Lexical cue
T1	16-21	GeneOrGeneProduct	denotes	brain
T2	22-26	GeneOrGeneProduct	denotes	iron
T3	93-103	GeneOrGeneProduct	denotes	novel gene
T4	104-112	GeneOrGeneProduct	denotes	mutation

LitCoin-GeneOrGeneProduct-v2

Id	Subject	Object	Predicate	Lexical cue
T1	16-21	GeneOrGeneProduct	denotes	brain
T2	93-103	GeneOrGeneProduct	denotes	novel gene

LitCoin-Disease-MeSH

Id	Subject	Object	Predicate	Lexical cue	originalLabel
T1	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia	C536004

LitCoin-GeneOrGeneProduct-v3

Id	Subject	Object	Predicate	Lexical cue
T1	93-103	GeneOrGeneProduct	denotes	novel gene

LitCoin_Mondo_095

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia	0011426

LitCoin-MeSH-Disease-2

Id	Subject	Object	Predicate	Lexical cue	ID:
T1	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia	C536004

LitCoin-MONDO_bioort2019

Id	Subject	Object	Predicate	Lexical cue	#label
T1	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia	C536004

LitCoin-Chemical-MeSH-CHEBI

Id	Subject	Object	Predicate	Lexical cue	ID:
T1	22-26	ChemicalEntity	denotes	iron	D007501\|http://purl.obolibrary.org/obo/CHEBI_18248
T3	50-61	ChemicalEntity	denotes	deferasirox	D000077588\|http://purl.obolibrary.org/obo/CHEBI_49005

LitCoin-training-merged

Id	Subject	Object	Predicate	Lexical cue	#label	ID:
T3	50-61	ChemicalEntity	denotes	deferasirox		http://purl.obolibrary.org/obo/CHEBI_49005\|D000077588
T1	22-26	ChemicalEntity	denotes	iron		http://purl.obolibrary.org/obo/CHEBI_18248\|D007501
T99273	93-103	GeneOrGeneProduct	denotes	novel gene
T48388	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia	C536004

sentences

Id	Subject	Object	Predicate	Lexical cue
TextSentencer_T1	0-113	Sentence	denotes	Hepatic but not brain iron is rapidly chelated by deferasirox in aceruloplasminemia due to a novel gene mutation.
T1	0-113	Sentence	denotes	Hepatic but not brain iron is rapidly chelated by deferasirox in aceruloplasminemia due to a novel gene mutation.

performance-test

Id	Subject	Object	Predicate	Lexical cue
PD-UBERON-AE-B_T6	16-21	http://purl.obolibrary.org/obo/UBERON_0000955	denotes	brain

UBERON-AE

Id	Subject	Object	Predicate	Lexical cue
PD-UBERON-AE-B_T1	16-21	http://purl.obolibrary.org/obo/UBERON_0000955	denotes	brain

PubCasesHPO

Id	Subject	Object	Predicate	Lexical cue
TI1	65-83	HP:0025498	denotes	aceruloplasminemia

PubCasesORDO

Id	Subject	Object	Predicate	Lexical cue
TI1	65-83	ORDO:48818	denotes	aceruloplasminemia

biored-valid

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-deepseek-nr-ng

Id	Subject	Object	Predicate	Lexical cue
T1	0-7	DiseaseOrPhenotypicFeature	denotes	Hepatic
T2	22-26	ChemicalEntity	denotes	iron
T3	50-61	ChemicalEntity	denotes	deferasirox
T4	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia
T5	99-103	GeneOrGeneProduct	denotes	gene

biored-valid-deepseek-nr-g

Id	Subject	Object	Predicate	Lexical cue
T1	0-7	DiseaseOrPhenotypicFeature	denotes	Hepatic
T2	22-26	ChemicalEntity	denotes	iron
T3	50-61	ChemicalEntity	denotes	deferasirox
T4	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia
T5	99-103	GeneOrGeneProduct	denotes	gene

biored-valid-deepseek-r-ng

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-deepseek-r-g

Id	Subject	Object	Predicate	Lexical cue
T1	50-61	ChemicalEntity	denotes	deferasirox
T2	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-gemini-nr-ng

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia
T4	93-112	SequenceVariant	denotes	novel gene mutation

biored-valid-gemini-r-ng

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia
T4	99-112	DiseaseOrPhenotypicFeature	denotes	gene mutation

biored-valid-gemini-r-g

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-gpt-nr-ng

Id	Subject	Object	Predicate	Lexical cue
T1	50-61	ChemicalEntity	denotes	deferasirox
T2	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-gpt-nr-g

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-gpt-r-g

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-gpt-r-ng

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-gemini-nr-g

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia
T4	99-112	SequenceVariant	denotes	gene mutation

biored-valid-gpt-r-m

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-gemini-r-m

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia

biored-valid-deepseek-r-m

Id	Subject	Object	Predicate	Lexical cue
T1	22-26	ChemicalEntity	denotes	iron
T2	50-61	ChemicalEntity	denotes	deferasirox
T3	65-83	DiseaseOrPhenotypicFeature	denotes	aceruloplasminemia