> top > docs > PubMed:20729346 > annotations

PubMed:20729346 JSONTXT

Annnotations TAB JSON ListView MergeView

Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 269-276 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T2 300-307 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T3 402-409 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T4 505-512 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T5 904-911 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T6 912-919 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T7 974-983 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T8 974-983 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose
T9 1204-1213 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T10 1204-1213 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 269-276 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ
T2 300-307 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ
T3 402-409 Glycan_Motif denotes glucose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G15021LG
T4 505-512 Glycan_Motif denotes glucose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G15021LG
T5 904-911 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ
T6 912-919 Glycan_Motif denotes glucose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G15021LG
T7 974-983 Glycan_Motif denotes galactose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE
T9 1204-1213 Glycan_Motif denotes galactose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 269-276 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T2 300-307 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T3 402-409 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T4 505-512 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T5 904-911 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T6 912-919 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T7 974-983 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T8 974-983 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose
T9 1204-1213 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T10 1204-1213 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-186 Sentence denotes Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes.
TextSentencer_T2 187-424 Sentence denotes The three crystal structures reported here provide details of the interactions of mannose and the mannosyl-α-1,3-mannose component of a pentamannose with banana lectin and evidence for the binding of glucosyl-α-1,2-glucose to the lectin.
TextSentencer_T3 425-513 Sentence denotes The known structures involving the lectin include a complex with glucosyl-β-1,3-glucose.
TextSentencer_T4 514-664 Sentence denotes Modeling studies on the three disaccharide complexes with the reducing end and the nonreducing end at the primary binding site are also provided here.
TextSentencer_T5 665-952 Sentence denotes The results of the X-ray and modeling studies show that the disaccharides with an α-1,3 linkage prefer to have the nonreducing end at the primary binding site, whereas the reducing end is preferred at the site when the linkage is β-1,3 in mannose/glucose-specific β-prism I fold lectins.
TextSentencer_T6 953-1223 Sentence denotes In the corresponding galactose-specific lectins, however, α-1,3-linked disaccharides cannot bind the lectin with the nonreducing end at the primary binding site on account of steric clashes with an aromatic residue that occurs only when the lectin is galactose-specific.
TextSentencer_T7 1224-1401 Sentence denotes Molecular dynamics simulations based on the known structures involving banana lectin enrich the information on lectin-carbohydrate interactions obtained from crystal structures.
TextSentencer_T8 1402-1521 Sentence denotes They demonstrate that conformational selection as well as induced fit operate when carbohydrates bind to banana lectin.
T1 0-186 Sentence denotes Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes.
T2 187-424 Sentence denotes The three crystal structures reported here provide details of the interactions of mannose and the mannosyl-α-1,3-mannose component of a pentamannose with banana lectin and evidence for the binding of glucosyl-α-1,2-glucose to the lectin.
T3 425-513 Sentence denotes The known structures involving the lectin include a complex with glucosyl-β-1,3-glucose.
T4 514-664 Sentence denotes Modeling studies on the three disaccharide complexes with the reducing end and the nonreducing end at the primary binding site are also provided here.
T5 665-952 Sentence denotes The results of the X-ray and modeling studies show that the disaccharides with an α-1,3 linkage prefer to have the nonreducing end at the primary binding site, whereas the reducing end is preferred at the site when the linkage is β-1,3 in mannose/glucose-specific β-prism I fold lectins.
T6 953-1223 Sentence denotes In the corresponding galactose-specific lectins, however, α-1,3-linked disaccharides cannot bind the lectin with the nonreducing end at the primary binding site on account of steric clashes with an aromatic residue that occurs only when the lectin is galactose-specific.
T7 1224-1401 Sentence denotes Molecular dynamics simulations based on the known structures involving banana lectin enrich the information on lectin-carbohydrate interactions obtained from crystal structures.
T8 1402-1521 Sentence denotes They demonstrate that conformational selection as well as induced fit operate when carbohydrates bind to banana lectin.
T1 0-186 Sentence denotes Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes.
T2 187-424 Sentence denotes The three crystal structures reported here provide details of the interactions of mannose and the mannosyl-α-1,3-mannose component of a pentamannose with banana lectin and evidence for the binding of glucosyl-α-1,2-glucose to the lectin.
T3 425-513 Sentence denotes The known structures involving the lectin include a complex with glucosyl-β-1,3-glucose.
T4 514-664 Sentence denotes Modeling studies on the three disaccharide complexes with the reducing end and the nonreducing end at the primary binding site are also provided here.
T5 665-952 Sentence denotes The results of the X-ray and modeling studies show that the disaccharides with an α-1,3 linkage prefer to have the nonreducing end at the primary binding site, whereas the reducing end is preferred at the site when the linkage is β-1,3 in mannose/glucose-specific β-prism I fold lectins.
T6 953-1223 Sentence denotes In the corresponding galactose-specific lectins, however, α-1,3-linked disaccharides cannot bind the lectin with the nonreducing end at the primary binding site on account of steric clashes with an aromatic residue that occurs only when the lectin is galactose-specific.
T7 1224-1401 Sentence denotes Molecular dynamics simulations based on the known structures involving banana lectin enrich the information on lectin-carbohydrate interactions obtained from crystal structures.
T8 1402-1521 Sentence denotes They demonstrate that conformational selection as well as induced fit operate when carbohydrates bind to banana lectin.

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 49-61 FMAID:197276 denotes carbohydrate
_T2 49-61 FMAID:82737 denotes carbohydrate
_T3 84-90 FMAID:213291 denotes I fold
_T4 163-175 FMAID:82737 denotes carbohydrate
_T5 163-175 FMAID:197276 denotes carbohydrate
_T6 269-276 FMAID:196796 denotes mannose
_T7 269-276 FMAID:82801 denotes mannose
_T8 300-307 FMAID:82801 denotes mannose
_T9 300-307 FMAID:196796 denotes mannose
_T10 402-409 FMAID:82743 denotes glucose
_T11 402-409 FMAID:196732 denotes glucose
_T12 505-512 FMAID:196732 denotes glucose
_T13 505-512 FMAID:82743 denotes glucose
_T14 544-556 FMAID:196733 denotes disaccharide
_T15 544-556 FMAID:82744 denotes disaccharide
_T16 725-738 FMAID:82744 denotes disaccharides
_T17 725-738 FMAID:196733 denotes disaccharides
_T18 904-911 FMAID:82801 denotes mannose
_T19 904-911 FMAID:196796 denotes mannose
_T20 912-919 FMAID:82743 denotes glucose
_T21 912-919 FMAID:196732 denotes glucose
_T22 937-943 FMAID:213291 denotes I fold
_T23 974-983 FMAID:82794 denotes galactose
_T24 974-983 FMAID:196789 denotes galactose
_T25 1024-1037 FMAID:196733 denotes disaccharides
_T26 1024-1037 FMAID:82744 denotes disaccharides
_T27 1204-1213 FMAID:82794 denotes galactose
_T28 1204-1213 FMAID:196789 denotes galactose
_T29 1342-1354 FMAID:82737 denotes carbohydrate
_T30 1342-1354 FMAID:197276 denotes carbohydrate
_T31 1485-1498 FMAID:197276 denotes carbohydrates
_T32 1485-1498 FMAID:82737 denotes carbohydrates

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 78-83 http://www.uniprot.org/uniprot/Q3UZD5 denotes prism
T2 931-936 http://www.uniprot.org/uniprot/Q3UZD5 denotes prism

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 73-77 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T2 73-77 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T3 149-155 http://purl.bioontology.org/ontology/NCBITAXON/695640 denotes banana
T4 149-155 http://purl.bioontology.org/ontology/NCBITAXON/631390 denotes banana
T5 341-347 http://purl.bioontology.org/ontology/NCBITAXON/695640 denotes banana
T6 341-347 http://purl.bioontology.org/ontology/NCBITAXON/631390 denotes banana
T7 1295-1301 http://purl.bioontology.org/ontology/NCBITAXON/631390 denotes banana
T8 1295-1301 http://purl.bioontology.org/ontology/NCBITAXON/695640 denotes banana
T9 1507-1513 http://purl.bioontology.org/ontology/NCBITAXON/695640 denotes banana
T10 1507-1513 http://purl.bioontology.org/ontology/NCBITAXON/631390 denotes banana

GO-BP

Id Subject Object Predicate Lexical cue
T1 285-293 http://purl.obolibrary.org/obo/GO_0097502 denotes mannosyl

GO-MF

Id Subject Object Predicate Lexical cue
T1 49-69 http://purl.obolibrary.org/obo/GO_0030246 denotes carbohydrate binding
T2 1485-1503 http://purl.obolibrary.org/obo/GO_0030246 denotes carbohydrates bind
T3 62-69 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T4 376-383 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T5 628-635 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T6 811-818 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T7 1045-1049 http://purl.obolibrary.org/obo/GO_0070026 denotes bind
T8 1499-1503 http://purl.obolibrary.org/obo/GO_0070026 denotes bind
T9 62-69 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T10 376-383 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T11 628-635 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T12 811-818 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T13 1045-1049 http://purl.obolibrary.org/obo/GO_0003680 denotes bind
T14 1499-1503 http://purl.obolibrary.org/obo/GO_0003680 denotes bind
T15 62-69 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T16 376-383 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T17 628-635 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T18 811-818 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T19 1045-1049 http://purl.obolibrary.org/obo/GO_0017091 denotes bind
T20 1499-1503 http://purl.obolibrary.org/obo/GO_0017091 denotes bind
T21 62-69 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T22 376-383 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23 628-635 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T24 811-818 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T25 1045-1049 http://purl.obolibrary.org/obo/GO_0005488 denotes bind
T26 1499-1503 http://purl.obolibrary.org/obo/GO_0005488 denotes bind

Lectin-Jamboree-Sentence

Id Subject Object Predicate Lexical cue
T1 0-186 Sentence denotes Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes.
T2 187-424 Sentence denotes The three crystal structures reported here provide details of the interactions of mannose and the mannosyl-α-1,3-mannose component of a pentamannose with banana lectin and evidence for the binding of glucosyl-α-1,2-glucose to the lectin.
T3 425-513 Sentence denotes The known structures involving the lectin include a complex with glucosyl-β-1,3-glucose.
T4 514-664 Sentence denotes Modeling studies on the three disaccharide complexes with the reducing end and the nonreducing end at the primary binding site are also provided here.
T5 665-952 Sentence denotes The results of the X-ray and modeling studies show that the disaccharides with an α-1,3 linkage prefer to have the nonreducing end at the primary binding site, whereas the reducing end is preferred at the site when the linkage is β-1,3 in mannose/glucose-specific β-prism I fold lectins.
T6 953-1223 Sentence denotes In the corresponding galactose-specific lectins, however, α-1,3-linked disaccharides cannot bind the lectin with the nonreducing end at the primary binding site on account of steric clashes with an aromatic residue that occurs only when the lectin is galactose-specific.
T7 1224-1401 Sentence denotes Molecular dynamics simulations based on the known structures involving banana lectin enrich the information on lectin-carbohydrate interactions obtained from crystal structures.
T8 1402-1521 Sentence denotes They demonstrate that conformational selection as well as induced fit operate when carbohydrates bind to banana lectin.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 149-155 OrganismTaxon denotes banana 4641|89151
T3 341-347 OrganismTaxon denotes banana 4641|89151
T5 1295-1301 OrganismTaxon denotes banana 4641|89151
T7 1507-1513 OrganismTaxon denotes banana 4641|89151