PubMed:2071611 JSONTXT

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{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/2071611","sourcedb":"PubMed","sourceid":"2071611","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/2071611","text":"A congenitally abnormal fibrinogen (Vlissingen) with a 6-base deletion in the gamma-chain gene, causing defective calcium binding and impaired fibrin polymerization.\nA congenitally abnormal fibrinogen (Vlissingen) was isolated from the blood of a young woman suffering from massive pulmonary embolism. Fibrinogen Vlissingen showed an abnormal clotting time with both thrombin and Reptilase. The release of the fibrino-peptides A and B by thrombin was normal, but fibrin polymerization was impaired both in the presence and absence of Ca2+ ions. On sodium dodecyl sulfate-polyacrylamide gel electrophoresis performed according to Laemmli the gamma-chain of fibrinogen Vlissingen showed two bands, one normal and one having an apparently lower molecular mass of about 1,500 daltons. The previously described protective effect of Ca2+ ions on plasmin degradation of the carboxyl terminus of the gamma-chain of normal fibrinogen was only partially detectable in fibrinogen Vlissingen. In addition the binding of Ca2+ ions was decreased. Fibrinogen Vlissingen bound 2.4 Ca2+ ions per fibrinogen molecule at pH 7.4, whereas normal fibrinogen bound 3.1 Ca2+ ions. At pH 5.8 fibrinogen Vlissingen bound 1.1 Ca2+ ions, whereas normal fibrinogen bound 2.0 Ca2+ ions per molecule fibrinogen in the D-domains, again indicating a structural change in the carboxyl terminus of fibrinogen. The structural defect was determined by sequence analysis of DNA amplified by use of the polymerase chain reaction. Exons VIII, IX, and X of the gamma-chain gene were amplified and the DNA sequence of the amplified fragments was determined. A 6-base deletion was found in 50% of the fragments corresponding to exon VIII, indicating that the patient was heterozygous for the mutation. This deletion codes for amino acids Asn-319 and Asp-320 in the normal fibrinogen gamma-chain. The data indicate that Asn-319 and Asp-320 are crucial for maintaining the integrity of the carboxyl-terminal polymerization sites, the protective effect of Ca2+ ions on plasmin degradation of the carboxyl terminus of the gamma-chain, and the calcium binding domain at the carboxyl terminus of fibrinogen.","tracks":[{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":165},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":166,"end":301},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":302,"end":390},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":391,"end":544},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":545,"end":780},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":781,"end":980},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":981,"end":1032},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":1033,"end":1156},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":1157,"end":1374},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":1375,"end":1490},"obj":"Sentence"},{"id":"TextSentencer_T11","span":{"begin":1491,"end":1615},"obj":"Sentence"},{"id":"TextSentencer_T12","span":{"begin":1616,"end":1758},"obj":"Sentence"},{"id":"TextSentencer_T13","span":{"begin":1759,"end":1852},"obj":"Sentence"},{"id":"TextSentencer_T14","span":{"begin":1853,"end":2158},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":165},"obj":"Sentence"},{"id":"T2","span":{"begin":166,"end":301},"obj":"Sentence"},{"id":"T3","span":{"begin":302,"end":390},"obj":"Sentence"},{"id":"T4","span":{"begin":391,"end":544},"obj":"Sentence"},{"id":"T5","span":{"begin":545,"end":780},"obj":"Sentence"},{"id":"T6","span":{"begin":781,"end":980},"obj":"Sentence"},{"id":"T7","span":{"begin":981,"end":1032},"obj":"Sentence"},{"id":"T8","span":{"begin":1033,"end":1156},"obj":"Sentence"},{"id":"T9","span":{"begin":1157,"end":1374},"obj":"Sentence"},{"id":"T10","span":{"begin":1375,"end":1490},"obj":"Sentence"},{"id":"T11","span":{"begin":1491,"end":1615},"obj":"Sentence"},{"id":"T12","span":{"begin":1616,"end":1758},"obj":"Sentence"},{"id":"T13","span":{"begin":1759,"end":1852},"obj":"Sentence"},{"id":"T14","span":{"begin":1853,"end":2158},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T7","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T8","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T9","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T10","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T11","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T12","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T13","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T14","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T11","pred":"source","obj":"sentences"},{"subj":"T12","pred":"source","obj":"sentences"},{"subj":"T13","pred":"source","obj":"sentences"},{"subj":"T14","pred":"source","obj":"sentences"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":236,"end":241},"obj":"http://purl.obolibrary.org/obo/MAT_0000083"},{"id":"T2","span":{"begin":236,"end":241},"obj":"http://purl.obolibrary.org/obo/MAT_0000315"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T2","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":282,"end":300},"obj":"HP_0002204"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"}]},{"project":"UBERON-AE","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":236,"end":241},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"UBERON-AE"}]},{"project":"PubCasesHPO","denotations":[{"id":"AB1","span":{"begin":282,"end":300},"obj":"HP:0002204"}],"attributes":[{"subj":"AB1","pred":"source","obj":"PubCasesHPO"}]},{"project":"PubCasesORDO","denotations":[{"id":"AB1","span":{"begin":1807,"end":1810},"obj":"ORDO:63442"},{"id":"AB2","span":{"begin":1888,"end":1891},"obj":"ORDO:63442"}],"namespaces":[{"prefix":"ORDO","uri":"http://www.orpha.net/ORDO/Orphanet_"}],"attributes":[{"subj":"AB1","pred":"source","obj":"PubCasesORDO"},{"subj":"AB2","pred":"source","obj":"PubCasesORDO"}]},{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin"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