PubMed:20574043
Annnotations
Glycan-Motif
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 29-32 | https://glytoucan.org/Structures/Glycans/G56516VH | denotes | GM3 |
| T2 | 29-32 | https://glytoucan.org/Structures/Glycans/G91237TK | denotes | GM3 |
| T3 | 574-577 | https://glytoucan.org/Structures/Glycans/G56516VH | denotes | GM3 |
| T4 | 574-577 | https://glytoucan.org/Structures/Glycans/G91237TK | denotes | GM3 |
| T5 | 635-646 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
| T6 | 682-693 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
| T7 | 800-811 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
| T8 | 828-831 | https://glytoucan.org/Structures/Glycans/G56516VH | denotes | GM3 |
| T9 | 828-831 | https://glytoucan.org/Structures/Glycans/G91237TK | denotes | GM3 |
| T10 | 1040-1051 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 29-32 | Glycan_Motif | denotes | GM3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G91237TK|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56516VH |
| T3 | 574-577 | Glycan_Motif | denotes | GM3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G91237TK|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56516VH |
| T5 | 635-646 | Glycan_Motif | denotes | sialic acid | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY |
| T6 | 682-693 | Glycan_Motif | denotes | sialic acid | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY |
| T7 | 800-811 | Glycan_Motif | denotes | sialic acid | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY |
| T8 | 828-831 | Glycan_Motif | denotes | GM3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G91237TK|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56516VH |
| T10 | 1040-1051 | Glycan_Motif | denotes | sialic acid | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-106 | Sentence | denotes | Glycomimicry: display of the GM3 sugar epitope on Escherichia coli and Salmonella enterica sv Typhimurium. |
| TextSentencer_T2 | 107-230 | Sentence | denotes | Oligosaccharides present on the surface of pathogenic bacteria play an important role in their interaction with their host. |
| TextSentencer_T3 | 231-408 | Sentence | denotes | Bacteria with altered cell surface structures can be used to study these interactions, and glycoengineering represents a tool to display a glycoepitope on a different bacterium. |
| TextSentencer_T4 | 409-578 | Sentence | denotes | Here, we present non-pathogenic Escherichia coli and Salmonella enterica serovar Typhimurium expressing the sialyllactose oligosaccharide epitope of the ganglioside GM3. |
| TextSentencer_T5 | 579-976 | Sentence | denotes | By expression of the galactosyltransferase LgtE and the sialic acid transferase Lst as well as the CMP-sialic acid synthetase SiaB from Neisseria gonorrhoeae and Neisseria meningitidis in engineered strains devoid of the sialic acid catabolism, the GM3 sugar epitope was displayed on these bacteria as demonstrated by live cell immunostaining and a detailed analysis of their lipooligosaccharides. |
| TextSentencer_T6 | 977-1135 | Sentence | denotes | These strains offer the possibility to investigate the role of sialic acid in the recognition of bacteria by the immune system in a non-pathogenic background. |
| T1 | 0-106 | Sentence | denotes | Glycomimicry: display of the GM3 sugar epitope on Escherichia coli and Salmonella enterica sv Typhimurium. |
| T2 | 107-230 | Sentence | denotes | Oligosaccharides present on the surface of pathogenic bacteria play an important role in their interaction with their host. |
| T3 | 231-408 | Sentence | denotes | Bacteria with altered cell surface structures can be used to study these interactions, and glycoengineering represents a tool to display a glycoepitope on a different bacterium. |
| T4 | 409-578 | Sentence | denotes | Here, we present non-pathogenic Escherichia coli and Salmonella enterica serovar Typhimurium expressing the sialyllactose oligosaccharide epitope of the ganglioside GM3. |
| T5 | 579-976 | Sentence | denotes | By expression of the galactosyltransferase LgtE and the sialic acid transferase Lst as well as the CMP-sialic acid synthetase SiaB from Neisseria gonorrhoeae and Neisseria meningitidis in engineered strains devoid of the sialic acid catabolism, the GM3 sugar epitope was displayed on these bacteria as demonstrated by live cell immunostaining and a detailed analysis of their lipooligosaccharides. |
| T6 | 977-1135 | Sentence | denotes | These strains offer the possibility to investigate the role of sialic acid in the recognition of bacteria by the immune system in a non-pathogenic background. |
| T1 | 0-106 | Sentence | denotes | Glycomimicry: display of the GM3 sugar epitope on Escherichia coli and Salmonella enterica sv Typhimurium. |
| T2 | 107-230 | Sentence | denotes | Oligosaccharides present on the surface of pathogenic bacteria play an important role in their interaction with their host. |
| T3 | 231-408 | Sentence | denotes | Bacteria with altered cell surface structures can be used to study these interactions, and glycoengineering represents a tool to display a glycoepitope on a different bacterium. |
| T4 | 409-578 | Sentence | denotes | Here, we present non-pathogenic Escherichia coli and Salmonella enterica serovar Typhimurium expressing the sialyllactose oligosaccharide epitope of the ganglioside GM3. |
| T5 | 579-976 | Sentence | denotes | By expression of the galactosyltransferase LgtE and the sialic acid transferase Lst as well as the CMP-sialic acid synthetase SiaB from Neisseria gonorrhoeae and Neisseria meningitidis in engineered strains devoid of the sialic acid catabolism, the GM3 sugar epitope was displayed on these bacteria as demonstrated by live cell immunostaining and a detailed analysis of their lipooligosaccharides. |
| T6 | 977-1135 | Sentence | denotes | These strains offer the possibility to investigate the role of sialic acid in the recognition of bacteria by the immune system in a non-pathogenic background. |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 29-32 | https://glytoucan.org/Structures/Glycans/G56516VH | denotes | GM3 |
| T2 | 29-32 | https://glytoucan.org/Structures/Glycans/G91237TK | denotes | GM3 |
| T3 | 574-577 | https://glytoucan.org/Structures/Glycans/G56516VH | denotes | GM3 |
| T4 | 574-577 | https://glytoucan.org/Structures/Glycans/G91237TK | denotes | GM3 |
| T5 | 635-646 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
| T6 | 682-693 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
| T7 | 800-811 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
| T8 | 828-831 | https://glytoucan.org/Structures/Glycans/G56516VH | denotes | GM3 |
| T9 | 828-831 | https://glytoucan.org/Structures/Glycans/G91237TK | denotes | GM3 |
| T10 | 1040-1051 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
GlycoBiology-PACDB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 | denotes | Escherichia coli |
| _T2 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 | denotes | Escherichia coli |
| _T3 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 | denotes | Escherichia coli |
| _T4 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 | denotes | Escherichia coli |
| _T5 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 | denotes | Escherichia coli |
| _T6 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 | denotes | Escherichia coli |
| _T7 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 | denotes | Escherichia coli |
| _T8 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 | denotes | Escherichia coli |
| _T9 | 50-66 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 | denotes | Escherichia coli |
| _T10 | 71-90 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC743 | denotes | Salmonella enterica |
| _T11 | 71-105 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC249,LEC700 | denotes | Salmonella enterica sv Typhimurium |
| _T12 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 | denotes | Escherichia coli |
| _T13 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 | denotes | Escherichia coli |
| _T14 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 | denotes | Escherichia coli |
| _T15 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 | denotes | Escherichia coli |
| _T16 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 | denotes | Escherichia coli |
| _T17 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 | denotes | Escherichia coli |
| _T18 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 | denotes | Escherichia coli |
| _T19 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 | denotes | Escherichia coli |
| _T20 | 441-457 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 | denotes | Escherichia coli |
| _T21 | 462-481 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC743 | denotes | Salmonella enterica |
| _T22 | 715-736 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC438,LEC663,LEC773 | denotes | Neisseria gonorrhoeae |
| _T23 | 715-736 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC271,LEC289,LEC403,LEC476 | denotes | Neisseria gonorrhoeae |
| _T24 | 715-736 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC626 | denotes | Neisseria gonorrhoeae |
| _T25 | 715-736 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC331 | denotes | Neisseria gonorrhoeae |
| _T26 | 715-736 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC461,LEC573,LEC706 | denotes | Neisseria gonorrhoeae |
| _T27 | 715-736 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC125,LEC227,LEC308,LEC443,LEC541,LEC563 | denotes | Neisseria gonorrhoeae |
| _T28 | 741-763 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC453,LEC742 | denotes | Neisseria meningitidis |
GlycoBiology-FMA
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 33-38 | FMAID:196724 | denotes | sugar |
| _T2 | 107-123 | FMAID:196731 | denotes | Oligosaccharides |
| _T3 | 107-123 | FMAID:82742 | denotes | Oligosaccharides |
| _T4 | 139-146 | FMAID:146300 | denotes | surface |
| _T5 | 139-146 | FMAID:50594 | denotes | surface |
| _T6 | 253-265 | FMAID:212684 | denotes | cell surface |
| _T7 | 253-265 | FMAID:200942 | denotes | cell surface |
| _T8 | 258-265 | FMAID:50594 | denotes | surface |
| _T9 | 258-265 | FMAID:146300 | denotes | surface |
| _T10 | 531-546 | FMAID:196731 | denotes | oligosaccharide |
| _T11 | 531-546 | FMAID:82742 | denotes | oligosaccharide |
| _T12 | 562-573 | FMAID:82816 | denotes | ganglioside |
| _T13 | 562-573 | FMAID:196811 | denotes | ganglioside |
| _T14 | 832-837 | FMAID:196724 | denotes | sugar |
| _T15 | 897-906 | FMAID:63179 | denotes | live cell |
| _T16 | 897-906 | FMAID:167570 | denotes | live cell |
| _T17 | 955-975 | FMAID:82742 | denotes | lipooligosaccharides |
| _T18 | 955-975 | FMAID:196731 | denotes | lipooligosaccharides |
| _T19 | 1097-1106 | FMAID:66644 | denotes | system in |
| _T20 | 1097-1106 | FMAID:185472 | denotes | system in |
uniprot-human
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 647-658 | http://www.uniprot.org/uniprot/Q99484 | denotes | transferase |
| T2 | 678-681 | http://www.uniprot.org/uniprot/P21941 | denotes | CMP |
uniprot-mouse
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 91-93 | http://www.uniprot.org/uniprot/Q64331 | denotes | sv |
| T2 | 600-621 | http://www.uniprot.org/uniprot/P23336 | denotes | galactosyltransferase |
| T3 | 647-658 | http://www.uniprot.org/uniprot/P38649 | denotes | transferase |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 50-61 | http://purl.bioontology.org/ontology/NCBITAXON/561 | denotes | Escherichia |
| T2 | 71-81 | http://purl.bioontology.org/ontology/NCBITAXON/590 | denotes | Salmonella |
| T3 | 161-169 | http://purl.bioontology.org/ontology/NCBITAXON/2 | denotes | bacteria |
| T4 | 161-169 | http://purl.bioontology.org/ontology/NCBITAXON/629395 | denotes | bacteria |
| T5 | 231-239 | http://purl.bioontology.org/ontology/NCBITAXON/2 | denotes | Bacteria |
| T6 | 231-239 | http://purl.bioontology.org/ontology/NCBITAXON/629395 | denotes | Bacteria |
| T7 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538097 | denotes | bacterium |
| T8 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/400048 | denotes | bacterium |
| T9 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538072 | denotes | bacterium |
| T10 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538075 | denotes | bacterium |
| T11 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538076 | denotes | bacterium |
| T12 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538084 | denotes | bacterium |
| T13 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538085 | denotes | bacterium |
| T14 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538091 | denotes | bacterium |
| T15 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/1730 | denotes | bacterium |
| T16 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538099 | denotes | bacterium |
| T17 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538101 | denotes | bacterium |
| T18 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538104 | denotes | bacterium |
| T19 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/1368069 | denotes | bacterium |
| T20 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538107 | denotes | bacterium |
| T21 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538108 | denotes | bacterium |
| T22 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538113 | denotes | bacterium |
| T23 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/538117 | denotes | bacterium |
| T24 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/674166 | denotes | bacterium |
| T25 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/138290 | denotes | bacterium |
| T26 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/336403 | denotes | bacterium |
| T27 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/336404 | denotes | bacterium |
| T28 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/1144558 | denotes | bacterium |
| T29 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/336405 | denotes | bacterium |
| T30 | 398-407 | http://purl.bioontology.org/ontology/NCBITAXON/336400 | denotes | bacterium |
| T31 | 426-429 | http://purl.bioontology.org/ontology/NCBITAXON/604139 | denotes | non |
| T32 | 441-452 | http://purl.bioontology.org/ontology/NCBITAXON/561 | denotes | Escherichia |
| T33 | 462-472 | http://purl.bioontology.org/ontology/NCBITAXON/590 | denotes | Salmonella |
| T34 | 715-724 | http://purl.bioontology.org/ontology/NCBITAXON/206351 | denotes | Neisseria |
| T35 | 715-724 | http://purl.bioontology.org/ontology/NCBITAXON/482 | denotes | Neisseria |
| T36 | 715-724 | http://purl.bioontology.org/ontology/NCBITAXON/481 | denotes | Neisseria |
| T37 | 715-736 | http://purl.bioontology.org/ontology/NCBITAXON/485 | denotes | Neisseria gonorrhoeae |
| T38 | 741-750 | http://purl.bioontology.org/ontology/NCBITAXON/481 | denotes | Neisseria |
| T39 | 741-750 | http://purl.bioontology.org/ontology/NCBITAXON/482 | denotes | Neisseria |
| T40 | 741-750 | http://purl.bioontology.org/ontology/NCBITAXON/206351 | denotes | Neisseria |
| T41 | 741-763 | http://purl.bioontology.org/ontology/NCBITAXON/487 | denotes | Neisseria meningitidis |
| T42 | 869-877 | http://purl.bioontology.org/ontology/NCBITAXON/629395 | denotes | bacteria |
| T43 | 869-877 | http://purl.bioontology.org/ontology/NCBITAXON/2 | denotes | bacteria |
| T44 | 1074-1082 | http://purl.bioontology.org/ontology/NCBITAXON/2 | denotes | bacteria |
| T45 | 1074-1082 | http://purl.bioontology.org/ontology/NCBITAXON/629395 | denotes | bacteria |
| T46 | 1109-1112 | http://purl.bioontology.org/ontology/NCBITAXON/604139 | denotes | non |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 202-229 | http://purl.obolibrary.org/obo/GO_0051701 | denotes | interaction with their host |
| T2 | 812-822 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | catabolism |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 225-229 | http://purl.obolibrary.org/obo/GO_0018995 | denotes | host |
| T2 | 253-257 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T3 | 902-906 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T4 | 253-265 | http://purl.obolibrary.org/obo/GO_0009986 | denotes | cell surface |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 258-276 | http://purl.obolibrary.org/obo/UBERON_0003102 | denotes | surface structures |
| T2 | 1090-1103 | http://purl.obolibrary.org/obo/UBERON_0002405 | denotes | immune system |
GlycoBiology-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 398-407 | http://purl.obolibrary.org/obo/MAT_0000191 | denotes | bacterium |
GlyTouCan-IUPAC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| GlycanIUPAC_T1 | 33-38 | "http://rdf.glycoinfo.org/glycan/G59665TO" | denotes | sugar |
| GlycanIUPAC_T2 | 832-837 | "http://rdf.glycoinfo.org/glycan/G59665TO" | denotes | sugar |
| GlycanIUPAC_T3 | 33-38 | "http://rdf.glycoinfo.org/glycan/G32915EI" | denotes | sugar |
| GlycanIUPAC_T4 | 832-837 | "http://rdf.glycoinfo.org/glycan/G32915EI" | denotes | sugar |
| GlycanIUPAC_T5 | 33-38 | "http://rdf.glycoinfo.org/glycan/G60625TS" | denotes | sugar |
| GlycanIUPAC_T6 | 832-837 | "http://rdf.glycoinfo.org/glycan/G60625TS" | denotes | sugar |
| GlycanIUPAC_T7 | 426-429 | "http://rdf.glycoinfo.org/glycan/G02780QX" | denotes | non |
| GlycanIUPAC_T8 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G02780QX" | denotes | non |
| GlycanIUPAC_T9 | 426-429 | "http://rdf.glycoinfo.org/glycan/G18425DX" | denotes | non |
| GlycanIUPAC_T10 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G18425DX" | denotes | non |
| GlycanIUPAC_T11 | 426-429 | "http://rdf.glycoinfo.org/glycan/G18630JE" | denotes | non |
| GlycanIUPAC_T12 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G18630JE" | denotes | non |
| GlycanIUPAC_T13 | 426-429 | "http://rdf.glycoinfo.org/glycan/G01004IT" | denotes | non |
| GlycanIUPAC_T14 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G01004IT" | denotes | non |
| GlycanIUPAC_T15 | 426-429 | "http://rdf.glycoinfo.org/glycan/G87301QZ" | denotes | non |
| GlycanIUPAC_T16 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G87301QZ" | denotes | non |
| GlycanIUPAC_T17 | 426-429 | "http://rdf.glycoinfo.org/glycan/G39790GW" | denotes | non |
| GlycanIUPAC_T18 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G39790GW" | denotes | non |
| GlycanIUPAC_T19 | 426-429 | "http://rdf.glycoinfo.org/glycan/G42928BB" | denotes | non |
| GlycanIUPAC_T20 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G42928BB" | denotes | non |
| GlycanIUPAC_T21 | 426-429 | "http://rdf.glycoinfo.org/glycan/G51134HC" | denotes | non |
| GlycanIUPAC_T22 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G51134HC" | denotes | non |
| GlycanIUPAC_T23 | 426-429 | "http://rdf.glycoinfo.org/glycan/G68183GR" | denotes | non |
| GlycanIUPAC_T24 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G68183GR" | denotes | non |
| GlycanIUPAC_T25 | 426-429 | "http://rdf.glycoinfo.org/glycan/G46883FA" | denotes | non |
| GlycanIUPAC_T26 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G46883FA" | denotes | non |
| GlycanIUPAC_T27 | 426-429 | "http://rdf.glycoinfo.org/glycan/G54702VY" | denotes | non |
| GlycanIUPAC_T28 | 1109-1112 | "http://rdf.glycoinfo.org/glycan/G54702VY" | denotes | non |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 258-276 | http://purl.obolibrary.org/obo/UBERON_0003102 | denotes | surface structures |
| PD-UBERON-AE-B_T2 | 1090-1103 | http://purl.obolibrary.org/obo/UBERON_0002405 | denotes | immune system |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 29-32 | Glycan | denotes | GM3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G91237TK |
| T2 | 574-577 | Glycan | denotes | GM3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G91237TK |
| T3 | 828-831 | Glycan | denotes | GM3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G91237TK |
GlyCosmos15-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 50-66 | OrganismTaxon | denotes | Escherichia coli | 562 |
| T2 | 71-90 | OrganismTaxon | denotes | Salmonella enterica | 28901 |
| T3 | 161-169 | OrganismTaxon | denotes | bacteria | 2|629395 |
| T5 | 231-239 | OrganismTaxon | denotes | Bacteria | 2|629395 |
| T7 | 441-457 | OrganismTaxon | denotes | Escherichia coli | 562 |
| T8 | 462-481 | OrganismTaxon | denotes | Salmonella enterica | 28901 |
| T9 | 715-736 | OrganismTaxon | denotes | Neisseria gonorrhoeae | 485 |
| T10 | 741-763 | OrganismTaxon | denotes | Neisseria meningitidis | 487 |
| T11 | 869-877 | OrganismTaxon | denotes | bacteria | 2|629395 |
| T13 | 1074-1082 | OrganismTaxon | denotes | bacteria | 2|629395 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 258-276 | Body_part | denotes | surface structures | http://purl.obolibrary.org/obo/UBERON_0003102 |
| T2 | 1090-1103 | Body_part | denotes | immune system | http://purl.obolibrary.org/obo/UBERON_0002405 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-106 | Sentence | denotes | Glycomimicry: display of the GM3 sugar epitope on Escherichia coli and Salmonella enterica sv Typhimurium. |
| TextSentencer_T2 | 107-230 | Sentence | denotes | Oligosaccharides present on the surface of pathogenic bacteria play an important role in their interaction with their host. |
| TextSentencer_T3 | 231-408 | Sentence | denotes | Bacteria with altered cell surface structures can be used to study these interactions, and glycoengineering represents a tool to display a glycoepitope on a different bacterium. |
| TextSentencer_T4 | 409-578 | Sentence | denotes | Here, we present non-pathogenic Escherichia coli and Salmonella enterica serovar Typhimurium expressing the sialyllactose oligosaccharide epitope of the ganglioside GM3. |
| TextSentencer_T5 | 579-976 | Sentence | denotes | By expression of the galactosyltransferase LgtE and the sialic acid transferase Lst as well as the CMP-sialic acid synthetase SiaB from Neisseria gonorrhoeae and Neisseria meningitidis in engineered strains devoid of the sialic acid catabolism, the GM3 sugar epitope was displayed on these bacteria as demonstrated by live cell immunostaining and a detailed analysis of their lipooligosaccharides. |
| TextSentencer_T6 | 977-1135 | Sentence | denotes | These strains offer the possibility to investigate the role of sialic acid in the recognition of bacteria by the immune system in a non-pathogenic background. |
| T1 | 0-106 | Sentence | denotes | Glycomimicry: display of the GM3 sugar epitope on Escherichia coli and Salmonella enterica sv Typhimurium. |
| T2 | 107-230 | Sentence | denotes | Oligosaccharides present on the surface of pathogenic bacteria play an important role in their interaction with their host. |
| T3 | 231-408 | Sentence | denotes | Bacteria with altered cell surface structures can be used to study these interactions, and glycoengineering represents a tool to display a glycoepitope on a different bacterium. |
| T4 | 409-578 | Sentence | denotes | Here, we present non-pathogenic Escherichia coli and Salmonella enterica serovar Typhimurium expressing the sialyllactose oligosaccharide epitope of the ganglioside GM3. |
| T5 | 579-976 | Sentence | denotes | By expression of the galactosyltransferase LgtE and the sialic acid transferase Lst as well as the CMP-sialic acid synthetase SiaB from Neisseria gonorrhoeae and Neisseria meningitidis in engineered strains devoid of the sialic acid catabolism, the GM3 sugar epitope was displayed on these bacteria as demonstrated by live cell immunostaining and a detailed analysis of their lipooligosaccharides. |
| T6 | 977-1135 | Sentence | denotes | These strains offer the possibility to investigate the role of sialic acid in the recognition of bacteria by the immune system in a non-pathogenic background. |
| T1 | 0-106 | Sentence | denotes | Glycomimicry: display of the GM3 sugar epitope on Escherichia coli and Salmonella enterica sv Typhimurium. |
| T2 | 107-230 | Sentence | denotes | Oligosaccharides present on the surface of pathogenic bacteria play an important role in their interaction with their host. |
| T3 | 231-408 | Sentence | denotes | Bacteria with altered cell surface structures can be used to study these interactions, and glycoengineering represents a tool to display a glycoepitope on a different bacterium. |
| T4 | 409-578 | Sentence | denotes | Here, we present non-pathogenic Escherichia coli and Salmonella enterica serovar Typhimurium expressing the sialyllactose oligosaccharide epitope of the ganglioside GM3. |
| T5 | 579-976 | Sentence | denotes | By expression of the galactosyltransferase LgtE and the sialic acid transferase Lst as well as the CMP-sialic acid synthetase SiaB from Neisseria gonorrhoeae and Neisseria meningitidis in engineered strains devoid of the sialic acid catabolism, the GM3 sugar epitope was displayed on these bacteria as demonstrated by live cell immunostaining and a detailed analysis of their lipooligosaccharides. |
| T6 | 977-1135 | Sentence | denotes | These strains offer the possibility to investigate the role of sialic acid in the recognition of bacteria by the immune system in a non-pathogenic background. |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-106 | Sentence | denotes | Glycomimicry: display of the GM3 sugar epitope on Escherichia coli and Salmonella enterica sv Typhimurium. |
| T2 | 107-230 | Sentence | denotes | Oligosaccharides present on the surface of pathogenic bacteria play an important role in their interaction with their host. |
| T3 | 231-408 | Sentence | denotes | Bacteria with altered cell surface structures can be used to study these interactions, and glycoengineering represents a tool to display a glycoepitope on a different bacterium. |
| T4 | 409-578 | Sentence | denotes | Here, we present non-pathogenic Escherichia coli and Salmonella enterica serovar Typhimurium expressing the sialyllactose oligosaccharide epitope of the ganglioside GM3. |
| T5 | 579-976 | Sentence | denotes | By expression of the galactosyltransferase LgtE and the sialic acid transferase Lst as well as the CMP-sialic acid synthetase SiaB from Neisseria gonorrhoeae and Neisseria meningitidis in engineered strains devoid of the sialic acid catabolism, the GM3 sugar epitope was displayed on these bacteria as demonstrated by live cell immunostaining and a detailed analysis of their lipooligosaccharides. |
| T6 | 977-1135 | Sentence | denotes | These strains offer the possibility to investigate the role of sialic acid in the recognition of bacteria by the immune system in a non-pathogenic background. |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 29-32 | Glycan | denotes | GM3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G91237TK |
| T2 | 574-577 | Glycan | denotes | GM3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G91237TK |
| T3 | 828-831 | Glycan | denotes | GM3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G91237TK |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 50-66 | OrganismTaxon | denotes | Escherichia coli | 562 |
| T2 | 71-90 | OrganismTaxon | denotes | Salmonella enterica | 28901 |
| T3 | 161-169 | OrganismTaxon | denotes | bacteria | 2|629395 |
| T5 | 231-239 | OrganismTaxon | denotes | Bacteria | 2|629395 |
| T7 | 441-457 | OrganismTaxon | denotes | Escherichia coli | 562 |
| T8 | 462-481 | OrganismTaxon | denotes | Salmonella enterica | 28901 |
| T9 | 715-736 | OrganismTaxon | denotes | Neisseria gonorrhoeae | 485 |
| T10 | 741-763 | OrganismTaxon | denotes | Neisseria meningitidis | 487 |
| T11 | 869-877 | OrganismTaxon | denotes | bacteria | 2|629395 |
| T13 | 1074-1082 | OrganismTaxon | denotes | bacteria | 2|629395 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 258-276 | Body_part | denotes | surface structures | http://purl.obolibrary.org/obo/UBERON_0003102 |
| T2 | 1090-1103 | Body_part | denotes | immune system | http://purl.obolibrary.org/obo/UBERON_0002405 |