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PubMed:20523265 JSONTXT

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LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
7411 21-40 GeneOrGeneProduct denotes complement factor H NCBIGene:3075
7412 42-44 GeneOrGeneProduct denotes C2 NCBIGene:717
7413 46-49 GeneOrGeneProduct denotes CFB NCBIGene:629
7414 55-57 GeneOrGeneProduct denotes C3 NCBIGene:718
7415 62-94 DiseaseOrPhenotypicFeature denotes age-related macular degeneration MESH:D008268
7416 176-195 GeneOrGeneProduct denotes complement factor H NCBIGene:3075
7417 197-200 GeneOrGeneProduct denotes CFH NCBIGene:3075
7418 203-208 GeneOrGeneProduct denotes C2/BF NCBIGene:629|NCBIGene:717
7419 214-216 GeneOrGeneProduct denotes C3 NCBIGene:718
7420 259-291 DiseaseOrPhenotypicFeature denotes age-related macular degeneration MESH:D008268
7421 293-296 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7422 500-508 OrganismTaxon denotes patients NCBITaxon:9606
7423 518-521 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7424 526-534 OrganismTaxon denotes patients NCBITaxon:9606
7425 545-551 DiseaseOrPhenotypicFeature denotes drusen MESH:D005128
7426 652-655 GeneOrGeneProduct denotes CFH NCBIGene:3075
7427 672-674 GeneOrGeneProduct denotes C2 NCBIGene:717
7428 676-679 GeneOrGeneProduct denotes CFB NCBIGene:629
7429 686-688 GeneOrGeneProduct denotes C3 NCBIGene:718
7430 780-785 GeneOrGeneProduct denotes CFHR1 NCBIGene:3078
7431 790-795 GeneOrGeneProduct denotes CFHR3 NCBIGene:10878
7432 906-915 SequenceVariant denotes rs3753394 DBSNP:rs3753394
7433 930-938 SequenceVariant denotes rs800292 DBSNP:rs800292
7434 953-962 SequenceVariant denotes rs1061170 DBSNP:rs1061170
7435 982-991 SequenceVariant denotes rs1329428 DBSNP:rs1329428
7436 1009-1012 GeneOrGeneProduct denotes CFH NCBIGene:3075
7437 1055-1058 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7438 1176-1179 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7439 1298-1307 SequenceVariant denotes rs2274700 DBSNP:rs2274700
7440 1312-1321 SequenceVariant denotes rs1410996 DBSNP:rs1410996
7441 1366-1369 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7442 1431-1434 GeneOrGeneProduct denotes CFH NCBIGene:3075
7443 1473-1479 DiseaseOrPhenotypicFeature denotes drusen MESH:D005128
7444 1505-1508 GeneOrGeneProduct denotes CFH NCBIGene:3075
7445 1510-1512 GeneOrGeneProduct denotes C2 NCBIGene:717
7446 1514-1517 GeneOrGeneProduct denotes CFB NCBIGene:629
7447 1523-1525 GeneOrGeneProduct denotes C3 NCBIGene:718
7448 1575-1578 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7449 1582-1588 DiseaseOrPhenotypicFeature denotes drusen MESH:D005128
7450 1622-1627 GeneOrGeneProduct denotes CFHR1 NCBIGene:3078
7451 1632-1637 GeneOrGeneProduct denotes CFHR3 NCBIGene:10878
7452 1725-1728 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7453 1732-1738 DiseaseOrPhenotypicFeature denotes drusen MESH:D005128
7454 1780-1789 SequenceVariant denotes rs3753394 DBSNP:rs3753394
7455 1804-1812 SequenceVariant denotes rs800292 DBSNP:rs800292
7456 1827-1836 SequenceVariant denotes rs1061170 DBSNP:rs1061170
7457 1856-1865 SequenceVariant denotes rs1329428 DBSNP:rs1329428
7458 1888-1897 SequenceVariant denotes rs7535263 DBSNP:rs7535263
7459 1899-1908 SequenceVariant denotes rs1410996 DBSNP:rs1410996
7460 1913-1922 SequenceVariant denotes rs2274700 DBSNP:rs2274700
7461 1927-1930 GeneOrGeneProduct denotes CFH NCBIGene:3075
7462 1970-1973 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7463 2035-2038 GeneOrGeneProduct denotes CFH NCBIGene:3075
7464 2061-2064 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7465 2127-2132 GeneOrGeneProduct denotes CFHR1 NCBIGene:3078
7466 2137-2142 GeneOrGeneProduct denotes CFHR3 NCBIGene:10878
7467 2262-2265 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268
7468 2291-2293 GeneOrGeneProduct denotes C2 NCBIGene:717
7469 2295-2298 GeneOrGeneProduct denotes CFB NCBIGene:629
7470 2304-2306 GeneOrGeneProduct denotes C3 NCBIGene:718
7471 2351-2354 DiseaseOrPhenotypicFeature denotes AMD MESH:D008268

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Association study of complement factor H, C2, CFB, and C3 and age-related macular degeneration in a Han Chinese population.
T2 124-132 Sentence denotes PURPOSE:
T3 133-298 Sentence denotes Genes in the complement pathway, including complement factor H (CFH), C2/BF, and C3, have been reported to be associated with age-related macular degeneration (AMD).
T4 299-462 Sentence denotes Genetic variants, single-nucleotide polymorphisms (SNPs), in these genes were geno-typed for a case-control association study in a mainland Han Chinese population.
T5 463-471 Sentence denotes METHODS:
T6 472-637 Sentence denotes One hundred and fifty-eight patients with wet AMD, 80 patients with soft drusen, and 220 matched control subjects were recruited among Han Chinese in mainland China.
T7 638-734 Sentence denotes Seven SNPs in CFH and two SNPs in C2, CFB', and C3 were genotyped using the ABI SNaPshot method.
T8 735-875 Sentence denotes A deletion of 84,682 base pairs covering the CFHR1 and CFHR3 genes was detected by direct polymerase chain reaction and gel electrophoresis.
T9 876-884 Sentence denotes RESULTS:
T10 885-1087 Sentence denotes Four SNPs, including rs3753394 (P = 0.0276), rs800292 (P = 0.0266), rs1061170 (P = 0.00514), and rs1329428 (P = 0.0089), in CFH showed a significant association with wet AMD in the cohort of this study.
T11 1088-1256 Sentence denotes A haplotype containing these four SNPs (CATA) significantly increased protection of wet AMD with a P value of 0.0005 and an odds ratio of 0.29 (95% confidence interval:
T12 1257-1268 Sentence denotes 0.15-0.60).
T13 1269-1410 Sentence denotes Unlike in other populations, rs2274700 and rs1410996 did not show a significant association with AMD in the Chinese population of this study.
T14 1411-1617 Sentence denotes None of the SNPs in CFH showed a significant association with drusen, and none of the SNPs in CFH, C2, CFB, and C3 showed a significant association with either wet AMD or drusen in the cohort of this study.
T15 1618-1739 Sentence denotes The CFHR1 and CFHR3 deletion was not polymorphic in the Chinese population and was not associated with wet AMD or drusen.
T16 1740-1751 Sentence denotes CONCLUSION:
T17 1752-2011 Sentence denotes This study showed that SNPs rs3753394 (P = 0.0276), rs800292 (P = 0.0266), rs1061170 (P = 0.00514), and rs1329428 (P = 0.0089), but not rs7535263, rs1410996, or rs2274700, in CFH were significantly associated with wet AMD in a mainland Han Chinese population.
T18 2012-2355 Sentence denotes This study showed that CFH was more likely to be AMD susceptibility gene at Chr.1q31 based on the finding that the CFHR1 and CFHR3 deletion was not polymorphic in the cohort of this study, and none of the SNPs that were significantly associated with AMD in a white population in C2, CFB, and C3 genes showed a significant association with AMD.

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 62-94 DiseaseOrPhenotypicFeature denotes age-related macular degeneration 0005150
T2 74-94 DiseaseOrPhenotypicFeature denotes macular degeneration 0003004
T3 259-291 DiseaseOrPhenotypicFeature denotes age-related macular degeneration 0005150
T4 271-291 DiseaseOrPhenotypicFeature denotes macular degeneration 0003004

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T1 906-915 SequenceVariant denotes rs3753394
T2 930-938 SequenceVariant denotes rs800292
T3 953-962 SequenceVariant denotes rs1061170
T4 982-991 SequenceVariant denotes rs1329428
T5 1298-1307 SequenceVariant denotes rs2274700
T6 1312-1321 SequenceVariant denotes rs1410996
T7 1780-1789 SequenceVariant denotes rs3753394
T8 1804-1812 SequenceVariant denotes rs800292
T9 1827-1836 SequenceVariant denotes rs1061170
T10 1856-1865 SequenceVariant denotes rs1329428
T11 1888-1897 SequenceVariant denotes rs7535263
T12 1899-1908 SequenceVariant denotes rs1410996
T13 1913-1922 SequenceVariant denotes rs2274700

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 21-40 GeneOrGeneProduct denotes complement factor H
T2 95-99 GeneOrGeneProduct denotes in a
T3 176-195 GeneOrGeneProduct denotes complement factor H
T4 382-393 GeneOrGeneProduct denotes typed for a
T5 394-398 GeneOrGeneProduct denotes case
T6 425-429 GeneOrGeneProduct denotes in a
T7 463-470 GeneOrGeneProduct denotes METHODS
T8 540-544 GeneOrGeneProduct denotes soft
T9 727-733 GeneOrGeneProduct denotes method
T10 756-760 GeneOrGeneProduct denotes base
T11 761-766 GeneOrGeneProduct denotes pairs
T12 780-785 GeneOrGeneProduct denotes CFHR1
T13 790-795 GeneOrGeneProduct denotes CFHR3
T14 825-835 GeneOrGeneProduct denotes polymerase
T15 836-841 GeneOrGeneProduct denotes chain
T16 855-858 GeneOrGeneProduct denotes gel
T17 1128-1132 GeneOrGeneProduct denotes CATA
T18 1176-1186 GeneOrGeneProduct denotes AMD with a
T19 1189-1194 GeneOrGeneProduct denotes value
T20 1279-1284 GeneOrGeneProduct denotes other
T21 1411-1415 GeneOrGeneProduct denotes None
T22 1485-1489 GeneOrGeneProduct denotes none
T23 1622-1627 GeneOrGeneProduct denotes CFHR1
T24 1632-1637 GeneOrGeneProduct denotes CFHR3
T25 1974-1978 GeneOrGeneProduct denotes in a
T26 2048-2054 GeneOrGeneProduct denotes likely
T27 2097-2102 GeneOrGeneProduct denotes based
T28 2110-2117 GeneOrGeneProduct denotes finding
T29 2127-2132 GeneOrGeneProduct denotes CFHR1
T30 2137-2142 GeneOrGeneProduct denotes CFHR3
T31 2205-2209 GeneOrGeneProduct denotes none
T32 2266-2270 GeneOrGeneProduct denotes in a
T33 2271-2276 GeneOrGeneProduct denotes white

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 21-40 GeneOrGeneProduct denotes complement factor H
T2 176-195 GeneOrGeneProduct denotes complement factor H
T3 540-544 GeneOrGeneProduct denotes soft
T4 727-733 GeneOrGeneProduct denotes method
T5 780-785 GeneOrGeneProduct denotes CFHR1
T6 790-795 GeneOrGeneProduct denotes CFHR3
T7 825-835 GeneOrGeneProduct denotes polymerase
T8 836-841 GeneOrGeneProduct denotes chain
T9 1128-1132 GeneOrGeneProduct denotes CATA
T10 1279-1284 GeneOrGeneProduct denotes other
T11 1485-1489 GeneOrGeneProduct denotes none
T12 1622-1627 GeneOrGeneProduct denotes CFHR1
T13 1632-1637 GeneOrGeneProduct denotes CFHR3
T14 2127-2132 GeneOrGeneProduct denotes CFHR1
T15 2137-2142 GeneOrGeneProduct denotes CFHR3
T16 2205-2209 GeneOrGeneProduct denotes none
T17 2271-2276 GeneOrGeneProduct denotes white

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 62-94 DiseaseOrPhenotypicFeature denotes age-related macular degeneration D008268
T2 259-291 DiseaseOrPhenotypicFeature denotes age-related macular degeneration D008268
T3 293-296 DiseaseOrPhenotypicFeature denotes AMD D008268
T4 518-521 DiseaseOrPhenotypicFeature denotes AMD D008268
T5 1055-1058 DiseaseOrPhenotypicFeature denotes AMD D008268
T6 1176-1179 DiseaseOrPhenotypicFeature denotes AMD D008268
T7 1366-1369 DiseaseOrPhenotypicFeature denotes AMD D008268
T8 1575-1578 DiseaseOrPhenotypicFeature denotes AMD D008268
T9 1725-1728 DiseaseOrPhenotypicFeature denotes AMD D008268
T10 1970-1973 DiseaseOrPhenotypicFeature denotes AMD D008268
T11 2061-2064 DiseaseOrPhenotypicFeature denotes AMD D008268
T12 2262-2265 DiseaseOrPhenotypicFeature denotes AMD D008268
T13 2351-2354 DiseaseOrPhenotypicFeature denotes AMD D008268

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 21-40 GeneOrGeneProduct denotes complement factor H
T2 176-195 GeneOrGeneProduct denotes complement factor H
T3 197-200 GeneOrGeneProduct denotes CFH
T4 652-655 GeneOrGeneProduct denotes CFH
T5 780-785 GeneOrGeneProduct denotes CFHR1
T6 790-795 GeneOrGeneProduct denotes CFHR3
T7 1009-1012 GeneOrGeneProduct denotes CFH
T8 1128-1132 GeneOrGeneProduct denotes CATA
T9 1431-1434 GeneOrGeneProduct denotes CFH
T10 1505-1508 GeneOrGeneProduct denotes CFH
T11 1622-1627 GeneOrGeneProduct denotes CFHR1
T12 1632-1637 GeneOrGeneProduct denotes CFHR3
T13 1927-1930 GeneOrGeneProduct denotes CFH
T14 2035-2038 GeneOrGeneProduct denotes CFH
T15 2127-2132 GeneOrGeneProduct denotes CFHR1
T16 2137-2142 GeneOrGeneProduct denotes CFHR3
T17 2271-2276 GeneOrGeneProduct denotes white

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 55-94 DiseaseOrPhenotypicFeature denotes C3 and age-related macular degeneration 0012659
T2 259-291 DiseaseOrPhenotypicFeature denotes age-related macular degeneration 0005150
T3 293-296 DiseaseOrPhenotypicFeature denotes AMD 0005150
T4 514-521 DiseaseOrPhenotypicFeature denotes wet AMD 0005417
T5 518-521 DiseaseOrPhenotypicFeature denotes AMD 0005150
T6 540-544 DiseaseOrPhenotypicFeature denotes soft 0013894
T7 1051-1058 DiseaseOrPhenotypicFeature denotes wet AMD 0005417
T8 1055-1058 DiseaseOrPhenotypicFeature denotes AMD 0005150
T9 1172-1179 DiseaseOrPhenotypicFeature denotes wet AMD 0005417
T10 1176-1179 DiseaseOrPhenotypicFeature denotes AMD 0005150
T11 1366-1369 DiseaseOrPhenotypicFeature denotes AMD 0005150
T12 1571-1578 DiseaseOrPhenotypicFeature denotes wet AMD 0005417
T13 1575-1578 DiseaseOrPhenotypicFeature denotes AMD 0005150
T14 1721-1728 DiseaseOrPhenotypicFeature denotes wet AMD 0005417
T15 1725-1728 DiseaseOrPhenotypicFeature denotes AMD 0005150
T16 1966-1973 DiseaseOrPhenotypicFeature denotes wet AMD 0005417
T17 1970-1973 DiseaseOrPhenotypicFeature denotes AMD 0005150
T18 2061-2064 DiseaseOrPhenotypicFeature denotes AMD 0005150
T19 2262-2265 DiseaseOrPhenotypicFeature denotes AMD 0005150
T20 2351-2354 DiseaseOrPhenotypicFeature denotes AMD 0005150

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 62-94 DiseaseOrPhenotypicFeature denotes age-related macular degeneration D008268
T2 259-291 DiseaseOrPhenotypicFeature denotes age-related macular degeneration D008268
T3 293-296 DiseaseOrPhenotypicFeature denotes AMD D008268
T4 518-521 DiseaseOrPhenotypicFeature denotes AMD D008268
T5 545-551 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T6 1055-1058 DiseaseOrPhenotypicFeature denotes AMD D008268
T7 1176-1179 DiseaseOrPhenotypicFeature denotes AMD D008268
T8 1366-1369 DiseaseOrPhenotypicFeature denotes AMD D008268
T9 1473-1479 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T10 1575-1578 DiseaseOrPhenotypicFeature denotes AMD D008268
T11 1582-1588 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T12 1725-1728 DiseaseOrPhenotypicFeature denotes AMD D008268
T13 1732-1738 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T14 1970-1973 DiseaseOrPhenotypicFeature denotes AMD D008268
T15 2061-2064 DiseaseOrPhenotypicFeature denotes AMD D008268
T16 2262-2265 DiseaseOrPhenotypicFeature denotes AMD D008268
T17 2351-2354 DiseaseOrPhenotypicFeature denotes AMD D008268

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 62-94 DiseaseOrPhenotypicFeature denotes age-related macular degeneration D008268
T2 259-291 DiseaseOrPhenotypicFeature denotes age-related macular degeneration D008268
T3 293-296 DiseaseOrPhenotypicFeature denotes AMD D008268
T4 518-521 DiseaseOrPhenotypicFeature denotes AMD D008268
T5 545-551 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T6 1055-1058 DiseaseOrPhenotypicFeature denotes AMD D008268
T7 1176-1179 DiseaseOrPhenotypicFeature denotes AMD D008268
T8 1366-1369 DiseaseOrPhenotypicFeature denotes AMD D008268
T9 1473-1479 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T10 1575-1578 DiseaseOrPhenotypicFeature denotes AMD D008268
T11 1582-1588 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T12 1725-1728 DiseaseOrPhenotypicFeature denotes AMD D008268
T13 1732-1738 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T14 1970-1973 DiseaseOrPhenotypicFeature denotes AMD D008268
T15 2061-2064 DiseaseOrPhenotypicFeature denotes AMD D008268
T16 2262-2265 DiseaseOrPhenotypicFeature denotes AMD D008268
T17 2351-2354 DiseaseOrPhenotypicFeature denotes AMD D008268

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 500-508 OrganismTaxon denotes patients
T2 526-534 OrganismTaxon denotes patients

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 293-296 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T2 518-521 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T3 1055-1058 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T4 1176-1179 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T5 1366-1369 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T6 1575-1578 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T7 1725-1728 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T8 1970-1973 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T9 2061-2064 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T10 2262-2265 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T11 2351-2354 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T11 2351-2354 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T10 2262-2265 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T9 2061-2064 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T8 1970-1973 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T7 1725-1728 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T6 1575-1578 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T5 1366-1369 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T4 1176-1179 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T3 1055-1058 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T2 518-521 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T1 293-296 ChemicalEntity denotes AMD http://purl.obolibrary.org/obo/CHEBI_61058
T17 2271-2276 GeneOrGeneProduct denotes white
T16 2137-2142 GeneOrGeneProduct denotes CFHR3
T15 2127-2132 GeneOrGeneProduct denotes CFHR1
T14 2035-2038 GeneOrGeneProduct denotes CFH
T13 1927-1930 GeneOrGeneProduct denotes CFH
T12 1632-1637 GeneOrGeneProduct denotes CFHR3
T80969 1622-1627 GeneOrGeneProduct denotes CFHR1
T83703 1505-1508 GeneOrGeneProduct denotes CFH
T29883 1431-1434 GeneOrGeneProduct denotes CFH
T56417 1128-1132 GeneOrGeneProduct denotes CATA
T88788 1009-1012 GeneOrGeneProduct denotes CFH
T95639 790-795 GeneOrGeneProduct denotes CFHR3
T8211 780-785 GeneOrGeneProduct denotes CFHR1
T61390 652-655 GeneOrGeneProduct denotes CFH
T95868 197-200 GeneOrGeneProduct denotes CFH
T689 176-195 GeneOrGeneProduct denotes complement factor H
T81599 21-40 GeneOrGeneProduct denotes complement factor H
T51482 2351-2354 DiseaseOrPhenotypicFeature denotes AMD D008268
T89682 2262-2265 DiseaseOrPhenotypicFeature denotes AMD D008268
T7465 2061-2064 DiseaseOrPhenotypicFeature denotes AMD D008268
T78724 1970-1973 DiseaseOrPhenotypicFeature denotes AMD D008268
T5727 1732-1738 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T87705 1725-1728 DiseaseOrPhenotypicFeature denotes AMD D008268
T91698 1582-1588 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T9988 1575-1578 DiseaseOrPhenotypicFeature denotes AMD D008268
T61523 1473-1479 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T27351 1366-1369 DiseaseOrPhenotypicFeature denotes AMD D008268
T68086 1176-1179 DiseaseOrPhenotypicFeature denotes AMD D008268
T90058 1055-1058 DiseaseOrPhenotypicFeature denotes AMD D008268
T49539 545-551 DiseaseOrPhenotypicFeature denotes drusen DISEASE
T92800 518-521 DiseaseOrPhenotypicFeature denotes AMD D008268
T18009 293-296 DiseaseOrPhenotypicFeature denotes AMD D008268
T45013 259-291 DiseaseOrPhenotypicFeature denotes age-related macular degeneration D008268
T42112 62-94 DiseaseOrPhenotypicFeature denotes age-related macular degeneration D008268
T55772 526-534 OrganismTaxon denotes patients
T64927 500-508 OrganismTaxon denotes patients
T5310 1913-1922 SequenceVariant denotes rs2274700
T37868 1899-1908 SequenceVariant denotes rs1410996
T1627 1888-1897 SequenceVariant denotes rs7535263
T66655 1856-1865 SequenceVariant denotes rs1329428
T91710 1827-1836 SequenceVariant denotes rs1061170
T79263 1804-1812 SequenceVariant denotes rs800292
T43371 1780-1789 SequenceVariant denotes rs3753394
T90609 1312-1321 SequenceVariant denotes rs1410996
T95731 1298-1307 SequenceVariant denotes rs2274700
T71310 982-991 SequenceVariant denotes rs1329428
T22157 953-962 SequenceVariant denotes rs1061170
T30195 930-938 SequenceVariant denotes rs800292
T69171 906-915 SequenceVariant denotes rs3753394

DisGeNET

Id Subject Object Predicate Lexical cue
T0 1622-1627 gene:3078 denotes CFHR1
T1 1725-1728 disease:C0242383 denotes AMD
T2 1622-1627 gene:3078 denotes CFHR1
T3 1732-1738 disease:C1260959 denotes drusen
T4 1632-1637 gene:10878 denotes CFHR3
T5 1732-1738 disease:C1260959 denotes drusen
T6 1632-1637 gene:10878 denotes CFHR3
T7 1725-1728 disease:C0242383 denotes AMD
T8 1927-1930 gene:3075 denotes CFH
T9 1970-1973 disease:C0242383 denotes AMD
T10 2127-2132 gene:3078 denotes CFHR1
T11 2061-2064 disease:C0242383 denotes AMD
T12 2035-2038 gene:3075 denotes CFH
T13 2262-2265 disease:C0242383 denotes AMD
T14 2035-2038 gene:3075 denotes CFH
T15 2351-2354 disease:C0242383 denotes AMD
T16 2035-2038 gene:3075 denotes CFH
T17 2061-2064 disease:C0242383 denotes AMD
T18 2127-2132 gene:3078 denotes CFHR1
T19 2262-2265 disease:C0242383 denotes AMD
T20 2127-2132 gene:3078 denotes CFHR1
T21 2351-2354 disease:C0242383 denotes AMD
T22 2137-2142 gene:10878 denotes CFHR3
T23 2061-2064 disease:C0242383 denotes AMD
T24 2137-2142 gene:10878 denotes CFHR3
T25 2262-2265 disease:C0242383 denotes AMD
T26 2137-2142 gene:10878 denotes CFHR3
T27 2351-2354 disease:C0242383 denotes AMD
T28 2295-2298 gene:629 denotes CFB
T29 2061-2064 disease:C0242383 denotes AMD
T30 2295-2298 gene:629 denotes CFB
T31 2262-2265 disease:C0242383 denotes AMD
T32 2295-2298 gene:629 denotes CFB
T33 2351-2354 disease:C0242383 denotes AMD
R1 T0 T1 associated_with CFHR1,AMD
R2 T2 T3 associated_with CFHR1,drusen
R3 T4 T5 associated_with CFHR3,drusen
R4 T6 T7 associated_with CFHR3,AMD
R5 T8 T9 associated_with CFH,AMD
R6 T10 T11 associated_with CFHR1,AMD
R7 T12 T13 associated_with CFH,AMD
R8 T14 T15 associated_with CFH,AMD
R9 T16 T17 associated_with CFH,AMD
R10 T18 T19 associated_with CFHR1,AMD
R11 T20 T21 associated_with CFHR1,AMD
R12 T22 T23 associated_with CFHR3,AMD
R13 T24 T25 associated_with CFHR3,AMD
R14 T26 T27 associated_with CFHR3,AMD
R15 T28 T29 associated_with CFB,AMD
R16 T30 T31 associated_with CFB,AMD
R17 T32 T33 associated_with CFB,AMD

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 259-291 HP_0007868 denotes age-related macular degeneration
T2 271-291 HP_0000608 denotes macular degeneration

Allie

Id Subject Object Predicate Lexical cue
SS1_20523265_2_0 176-195 expanded denotes complement factor H
SS2_20523265_2_0 197-200 abbr denotes CFH
SS1_20523265_2_1 259-291 expanded denotes age-related macular degeneration
SS2_20523265_2_1 293-296 abbr denotes AMD
SS1_20523265_3_0 317-348 expanded denotes single-nucleotide polymorphisms
SS2_20523265_3_0 350-354 abbr denotes SNPs
AE1_20523265_2_0 SS1_20523265_2_0 SS2_20523265_2_0 abbreviatedTo complement factor H,CFH
AE1_20523265_2_1 SS1_20523265_2_1 SS2_20523265_2_1 abbreviatedTo age-related macular degeneration,AMD
AE1_20523265_3_0 SS1_20523265_3_0 SS2_20523265_3_0 abbreviatedTo single-nucleotide polymorphisms,SNPs

DisGeNET5_variant_disease

Id Subject Object Predicate Lexical cue
20523265-11#52#60#geners800292 1804-1812 geners800292 denotes rs800292
20523265-11#28#37#geners3753394 1780-1789 geners3753394 denotes rs3753394
20523265-11#161#170#geners2274700 1913-1922 geners2274700 denotes rs2274700
20523265-11#147#156#geners1410996 1899-1908 geners1410996 denotes rs1410996
20523265-11#104#113#geners1329428 1856-1865 geners1329428 denotes rs1329428
20523265-11#136#145#geners7535263 1888-1897 geners7535263 denotes rs7535263
20523265-11#75#84#geners1061170 1827-1836 geners1061170 denotes rs1061170
20523265-11#218#221#diseaseC0242383 1970-1973 diseaseC0242383 denotes AMD
52#60#geners800292218#221#diseaseC0242383 20523265-11#52#60#geners800292 20523265-11#218#221#diseaseC0242383 associated_with rs800292,AMD
28#37#geners3753394218#221#diseaseC0242383 20523265-11#28#37#geners3753394 20523265-11#218#221#diseaseC0242383 associated_with rs3753394,AMD
161#170#geners2274700218#221#diseaseC0242383 20523265-11#161#170#geners2274700 20523265-11#218#221#diseaseC0242383 associated_with rs2274700,AMD
147#156#geners1410996218#221#diseaseC0242383 20523265-11#147#156#geners1410996 20523265-11#218#221#diseaseC0242383 associated_with rs1410996,AMD
104#113#geners1329428218#221#diseaseC0242383 20523265-11#104#113#geners1329428 20523265-11#218#221#diseaseC0242383 associated_with rs1329428,AMD
136#145#geners7535263218#221#diseaseC0242383 20523265-11#136#145#geners7535263 20523265-11#218#221#diseaseC0242383 associated_with rs7535263,AMD
75#84#geners1061170218#221#diseaseC0242383 20523265-11#75#84#geners1061170 20523265-11#218#221#diseaseC0242383 associated_with rs1061170,AMD

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
20523265-0#21#40#gene3075 21-40 gene3075 denotes complement factor H
20523265-0#46#49#gene629 46-49 gene629 denotes CFB
20523265-0#62#94#diseaseC0242383 62-94 diseaseC0242383 denotes age-related macular degeneration
20523265-10#4#9#gene3078 1622-1627 gene3078 denotes CFHR1
20523265-10#14#19#gene10878 1632-1637 gene10878 denotes CFHR3
20523265-10#114#120#diseaseC1260959 1732-1738 diseaseC1260959 denotes drusen
20523265-12#115#120#gene3078 2127-2132 gene3078 denotes CFHR1
20523265-12#125#130#gene10878 2137-2142 gene10878 denotes CFHR3
20523265-12#49#52#diseaseC0242383 2061-2064 diseaseC0242383 denotes AMD
20523265-12#250#253#diseaseC0242383 2262-2265 diseaseC0242383 denotes AMD
20523265-12#339#342#diseaseC0242383 2351-2354 diseaseC0242383 denotes AMD
20523265-12#49#52#diseaseC0242383 2061-2064 diseaseC0242383 denotes AMD
20523265-12#250#253#diseaseC0242383 2262-2265 diseaseC0242383 denotes AMD
20523265-12#339#342#diseaseC0242383 2351-2354 diseaseC0242383 denotes AMD
20523265-9#20#23#gene3075 1431-1434 gene3075 denotes CFH
20523265-9#94#97#gene3075 1505-1508 gene3075 denotes CFH
20523265-9#103#106#gene629 1514-1517 gene629 denotes CFB
20523265-9#62#68#diseaseC1260959 1473-1479 diseaseC1260959 denotes drusen
20523265-9#171#177#diseaseC1260959 1582-1588 diseaseC1260959 denotes drusen
21#40#gene307562#94#diseaseC0242383 20523265-0#21#40#gene3075 20523265-0#62#94#diseaseC0242383 associated_with complement factor H,age-related macular degeneration
46#49#gene62962#94#diseaseC0242383 20523265-0#46#49#gene629 20523265-0#62#94#diseaseC0242383 associated_with CFB,age-related macular degeneration
4#9#gene3078114#120#diseaseC1260959 20523265-10#4#9#gene3078 20523265-10#114#120#diseaseC1260959 associated_with CFHR1,drusen
14#19#gene10878114#120#diseaseC1260959 20523265-10#14#19#gene10878 20523265-10#114#120#diseaseC1260959 associated_with CFHR3,drusen
115#120#gene307849#52#diseaseC0242383 20523265-12#115#120#gene3078 20523265-12#49#52#diseaseC0242383 associated_with CFHR1,AMD
115#120#gene3078250#253#diseaseC0242383 20523265-12#115#120#gene3078 20523265-12#250#253#diseaseC0242383 associated_with CFHR1,AMD
115#120#gene3078339#342#diseaseC0242383 20523265-12#115#120#gene3078 20523265-12#339#342#diseaseC0242383 associated_with CFHR1,AMD
115#120#gene307849#52#diseaseC0242383 20523265-12#115#120#gene3078 20523265-12#49#52#diseaseC0242383 associated_with CFHR1,AMD
115#120#gene3078250#253#diseaseC0242383 20523265-12#115#120#gene3078 20523265-12#250#253#diseaseC0242383 associated_with CFHR1,AMD
115#120#gene3078339#342#diseaseC0242383 20523265-12#115#120#gene3078 20523265-12#339#342#diseaseC0242383 associated_with CFHR1,AMD
125#130#gene1087849#52#diseaseC0242383 20523265-12#125#130#gene10878 20523265-12#49#52#diseaseC0242383 associated_with CFHR3,AMD
125#130#gene10878250#253#diseaseC0242383 20523265-12#125#130#gene10878 20523265-12#250#253#diseaseC0242383 associated_with CFHR3,AMD
125#130#gene10878339#342#diseaseC0242383 20523265-12#125#130#gene10878 20523265-12#339#342#diseaseC0242383 associated_with CFHR3,AMD
125#130#gene1087849#52#diseaseC0242383 20523265-12#125#130#gene10878 20523265-12#49#52#diseaseC0242383 associated_with CFHR3,AMD
125#130#gene10878250#253#diseaseC0242383 20523265-12#125#130#gene10878 20523265-12#250#253#diseaseC0242383 associated_with CFHR3,AMD
125#130#gene10878339#342#diseaseC0242383 20523265-12#125#130#gene10878 20523265-12#339#342#diseaseC0242383 associated_with CFHR3,AMD
20#23#gene307562#68#diseaseC1260959 20523265-9#20#23#gene3075 20523265-9#62#68#diseaseC1260959 associated_with CFH,drusen
20#23#gene3075171#177#diseaseC1260959 20523265-9#20#23#gene3075 20523265-9#171#177#diseaseC1260959 associated_with CFH,drusen
94#97#gene307562#68#diseaseC1260959 20523265-9#94#97#gene3075 20523265-9#62#68#diseaseC1260959 associated_with CFH,drusen
94#97#gene3075171#177#diseaseC1260959 20523265-9#94#97#gene3075 20523265-9#171#177#diseaseC1260959 associated_with CFH,drusen
103#106#gene62962#68#diseaseC1260959 20523265-9#103#106#gene629 20523265-9#62#68#diseaseC1260959 associated_with CFB,drusen
103#106#gene629171#177#diseaseC1260959 20523265-9#103#106#gene629 20523265-9#171#177#diseaseC1260959 associated_with CFB,drusen

tmVarCorpus

Id Subject Object Predicate Lexical cue
T1 906-915 SNP:rs3753394 denotes rs3753394
T2 930-938 SNP:rs800292 denotes rs800292
T3 953-962 SNP:rs1061170 denotes rs1061170
T4 982-991 SNP:rs1329428 denotes rs1329428
T5 1298-1307 SNP:rs2274700 denotes rs2274700
T6 1312-1321 SNP:rs1410996 denotes rs1410996
T7 1780-1789 SNP:rs3753394 denotes rs3753394
T8 1804-1812 SNP:rs800292 denotes rs800292
T9 1827-1836 SNP:rs1061170 denotes rs1061170
T10 1856-1865 SNP:rs1329428 denotes rs1329428
T11 1888-1897 SNP:rs7535263 denotes rs7535263
T12 1899-1908 SNP:rs1410996 denotes rs1410996
T13 1913-1922 SNP:rs2274700 denotes rs2274700

PubTator4TogoVar

Id Subject Object Predicate Lexical cue resolved_to
71 906-915 SNP denotes rs3753394 tmVar:rs3753394;VariantGroup:1;CorrespondingGene:3075;RS#:3753394;CorrespondingSpecies:9606
72 930-938 SNP denotes rs800292 tmVar:rs800292;VariantGroup:5;CorrespondingGene:3075;RS#:800292;CorrespondingSpecies:9606
73 953-962 SNP denotes rs1061170 tmVar:rs1061170;VariantGroup:0;CorrespondingGene:3075;RS#:1061170;CorrespondingSpecies:9606
74 982-991 SNP denotes rs1329428 tmVar:rs1329428;VariantGroup:3;CorrespondingGene:3075;RS#:1329428;CorrespondingSpecies:9606
78 1298-1307 SNP denotes rs2274700 tmVar:rs2274700;VariantGroup:2;CorrespondingGene:3075;RS#:2274700;CorrespondingSpecies:9606
79 1312-1321 SNP denotes rs1410996 tmVar:rs1410996;VariantGroup:4;CorrespondingGene:3075;RS#:1410996;CorrespondingSpecies:9606
91 1780-1789 SNP denotes rs3753394 tmVar:rs3753394;VariantGroup:1;CorrespondingGene:3075;RS#:3753394;CorrespondingSpecies:9606
92 1804-1812 SNP denotes rs800292 tmVar:rs800292;VariantGroup:5;CorrespondingGene:3075;RS#:800292;CorrespondingSpecies:9606
93 1827-1836 SNP denotes rs1061170 tmVar:rs1061170;VariantGroup:0;CorrespondingGene:3075;RS#:1061170;CorrespondingSpecies:9606
94 1856-1865 SNP denotes rs1329428 tmVar:rs1329428;VariantGroup:3;CorrespondingGene:3075;RS#:1329428;CorrespondingSpecies:9606
95 1888-1897 SNP denotes rs7535263 tmVar:rs7535263;VariantGroup:6;CorrespondingGene:3075;RS#:7535263;CorrespondingSpecies:9606
96 1899-1908 SNP denotes rs1410996 tmVar:rs1410996;VariantGroup:4;CorrespondingGene:3075;RS#:1410996;CorrespondingSpecies:9606
97 1913-1922 SNP denotes rs2274700 tmVar:rs2274700;VariantGroup:2;CorrespondingGene:3075;RS#:2274700;CorrespondingSpecies:9606

PubTatorOnTogoVar

Id Subject Object Predicate Lexical cue resolved_to
71 906-915 SNP denotes rs3753394 tmVar:rs3753394;VariantGroup:1;CorrespondingGene:3075;RS#:3753394;CorrespondingSpecies:9606
72 930-938 SNP denotes rs800292 tmVar:rs800292;VariantGroup:5;CorrespondingGene:3075;RS#:800292;CorrespondingSpecies:9606
73 953-962 SNP denotes rs1061170 tmVar:rs1061170;VariantGroup:0;CorrespondingGene:3075;RS#:1061170;CorrespondingSpecies:9606
74 982-991 SNP denotes rs1329428 tmVar:rs1329428;VariantGroup:3;CorrespondingGene:3075;RS#:1329428;CorrespondingSpecies:9606
78 1298-1307 SNP denotes rs2274700 tmVar:rs2274700;VariantGroup:2;CorrespondingGene:3075;RS#:2274700;CorrespondingSpecies:9606
79 1312-1321 SNP denotes rs1410996 tmVar:rs1410996;VariantGroup:4;CorrespondingGene:3075;RS#:1410996;CorrespondingSpecies:9606
91 1780-1789 SNP denotes rs3753394 tmVar:rs3753394;VariantGroup:1;CorrespondingGene:3075;RS#:3753394;CorrespondingSpecies:9606
92 1804-1812 SNP denotes rs800292 tmVar:rs800292;VariantGroup:5;CorrespondingGene:3075;RS#:800292;CorrespondingSpecies:9606
93 1827-1836 SNP denotes rs1061170 tmVar:rs1061170;VariantGroup:0;CorrespondingGene:3075;RS#:1061170;CorrespondingSpecies:9606
94 1856-1865 SNP denotes rs1329428 tmVar:rs1329428;VariantGroup:3;CorrespondingGene:3075;RS#:1329428;CorrespondingSpecies:9606
95 1888-1897 SNP denotes rs7535263 tmVar:rs7535263;VariantGroup:6;CorrespondingGene:3075;RS#:7535263;CorrespondingSpecies:9606
96 1899-1908 SNP denotes rs1410996 tmVar:rs1410996;VariantGroup:4;CorrespondingGene:3075;RS#:1410996;CorrespondingSpecies:9606
97 1913-1922 SNP denotes rs2274700 tmVar:rs2274700;VariantGroup:2;CorrespondingGene:3075;RS#:2274700;CorrespondingSpecies:9606
T1 906-915 SNP denotes rs3753394 tmVar:rs3753394;VariantGroup:1;CorrespondingGene:3075;RS#:3753394;CorrespondingSpecies:9606
T2 930-938 SNP denotes rs800292 tmVar:rs800292;VariantGroup:5;CorrespondingGene:3075;RS#:800292;CorrespondingSpecies:9606
T3 953-962 SNP denotes rs1061170 tmVar:rs1061170;VariantGroup:0;CorrespondingGene:3075;RS#:1061170;CorrespondingSpecies:9606
T4 982-991 SNP denotes rs1329428 tmVar:rs1329428;VariantGroup:3;CorrespondingGene:3075;RS#:1329428;CorrespondingSpecies:9606
T5 1298-1307 SNP denotes rs2274700 tmVar:rs2274700;VariantGroup:2;CorrespondingGene:3075;RS#:2274700;CorrespondingSpecies:9606
T6 1312-1321 SNP denotes rs1410996 tmVar:rs1410996;VariantGroup:4;CorrespondingGene:3075;RS#:1410996;CorrespondingSpecies:9606
T7 1780-1789 SNP denotes rs3753394 tmVar:rs3753394;VariantGroup:1;CorrespondingGene:3075;RS#:3753394;CorrespondingSpecies:9606
T8 1804-1812 SNP denotes rs800292 tmVar:rs800292;VariantGroup:5;CorrespondingGene:3075;RS#:800292;CorrespondingSpecies:9606
T9 1827-1836 SNP denotes rs1061170 tmVar:rs1061170;VariantGroup:0;CorrespondingGene:3075;RS#:1061170;CorrespondingSpecies:9606
T10 1856-1865 SNP denotes rs1329428 tmVar:rs1329428;VariantGroup:3;CorrespondingGene:3075;RS#:1329428;CorrespondingSpecies:9606
T11 1888-1897 SNP denotes rs7535263 tmVar:rs7535263;VariantGroup:6;CorrespondingGene:3075;RS#:7535263;CorrespondingSpecies:9606
T12 1899-1908 SNP denotes rs1410996 tmVar:rs1410996;VariantGroup:4;CorrespondingGene:3075;RS#:1410996;CorrespondingSpecies:9606
T13 1913-1922 SNP denotes rs2274700 tmVar:rs2274700;VariantGroup:2;CorrespondingGene:3075;RS#:2274700;CorrespondingSpecies:9606