> top > docs > PubMed:2034676 > annotations

PubMed:2034676 JSONTXT

Annnotations TAB JSON ListView MergeView

DisGeNET

Id Subject Object Predicate Lexical cue
T0 1456-1462 gene:4005 denotes Rhom-2
T1 1516-1531 disease:C0023492 denotes T-cell leukemia
R1 T0 T1 associated_with Rhom-2,T-cell leukemia

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 193-201 HP_0001909 denotes leukemia
T2 216-225 HP_0009824 denotes short arm
T3 325-335 HP_0009609 denotes duplicated
T4 635-643 HP_0001909 denotes leukemia
T5 1203-1209 HP_0002664 denotes tumors
T6 1523-1531 HP_0001909 denotes leukemia
T7 1658-1668 HP_0009609 denotes duplicated

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 4-20 DNA denotes rhombotin family
T2 24-58 DNA denotes cysteine-rich LIM-domain oncogenes
T3 93-114 DNA denotes T-cell translocations
T4 118-151 DNA denotes human chromosomes 11p15 and 11p13
T5 216-225 DNA denotes short arm
T6 229-248 DNA denotes human chromosome 11
T7 252-262 DNA denotes band 11p15
T8 276-290 DNA denotes rhombotin gene
T9 336-357 protein denotes cysteine-rich regions
T10 365-376 protein denotes LIM domains
T11 401-422 protein denotes zinc-binding proteins
T12 430-449 protein denotes iron-sulfur centers
T13 453-464 protein denotes ferredoxins
T14 488-502 DNA denotes rhombotin gene
T15 552-558 DNA denotes Rhom-2
T16 574-593 DNA denotes human chromosome 11
T17 597-607 DNA denotes band 11p13
T18 628-667 DNA denotes T-cell leukemia-specific translocations
T19 708-713 DNA denotes 11p13
T20 734-745 DNA denotes Rhom-2 gene
T21 747-769 DNA denotes Human and mouse Rhom-2
T22 801-810 DNA denotes rhombotin
T23 823-855 DNA denotes tandem cysteine-rich LIM domains
T24 857-868 RNA denotes Rhom-2 mRNA
T25 1037-1043 DNA denotes Rhom-3
T26 1102-1112 DNA denotes LIM domain
T27 1116-1125 DNA denotes rhombotin
T28 1137-1148 DNA denotes Rhom-2 gene
T29 1196-1209 cell_type denotes T-cell tumors
T30 1254-1268 DNA denotes rhombotin gene
T31 1326-1335 DNA denotes rhombotin
T32 1410-1432 DNA denotes chromosome bands 11p15
T33 1434-1443 DNA denotes rhombotin
T34 1449-1454 DNA denotes 11p13
T35 1456-1462 DNA denotes Rhom-2
T36 1542-1554 DNA denotes 11p15 target
T37 1600-1609 DNA denotes rhombotin
T38 1636-1652 DNA denotes T-cell oncogenes
T39 1669-1694 DNA denotes cysteine-rich LIM domains

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
2034676-10#57#63#gene4005 1456-1462 gene4005 denotes Rhom-2
2034676-10#117#132#diseaseC0023492 1516-1531 diseaseC0023492 denotes T-cell leukemia
57#63#gene4005117#132#diseaseC0023492 2034676-10#57#63#gene4005 2034676-10#117#132#diseaseC0023492 associated_with Rhom-2,T-cell leukemia

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-152 Sentence denotes The rhombotin family of cysteine-rich LIM-domain oncogenes: distinct members are involved in T-cell translocations to human chromosomes 11p15 and 11p13.
S2 153-291 Sentence denotes A chromosomal translocation in a T-cell leukemia involving the short arm of human chromosome 11 at band 11p15 disrupts the rhombotin gene.
S3 292-465 Sentence denotes This gene encodes a protein with duplicated cysteine-rich regions called LIM domains, which show homology to zinc-binding proteins and to iron-sulfur centers of ferredoxins.
S4 466-526 Sentence denotes Two homologues of the rhombotin gene have now been isolated.
S5 527-746 Sentence denotes One of these, designated Rhom-2, is located on human chromosome 11 at band 11p13, where a cluster of T-cell leukemia-specific translocations occur; all translocation breakpoints at 11p13 are upstream of the Rhom-2 gene.
S6 747-856 Sentence denotes Human and mouse Rhom-2 are highly conserved and, like rhombotin, encode two tandem cysteine-rich LIM domains.
S7 857-1009 Sentence denotes Rhom-2 mRNA is expressed in early mouse development in central nervous system, lung, kidney, liver, and spleen but only very low levels occur in thymus.
S8 1010-1126 Sentence denotes The other gene, designated Rhom-3, is not on chromosome 11 but also retains homology to the LIM domain of rhombotin.
S9 1127-1290 Sentence denotes Since the Rhom-2 gene is such a common site of chromosomal damage in T-cell tumors, the consistency of translocations near the rhombotin gene was further examined.
S10 1291-1398 Sentence denotes A second translocation adjacent to rhombotin was found and at the same position as in the previous example.
S11 1399-1576 Sentence denotes Therefore, chromosome bands 11p15 (rhombotin) and 11p13 (Rhom-2) are consistent sites of chromosome translocation in T-cell leukemia, with the 11p15 target more rarely involved.
S12 1577-1695 Sentence denotes The results define the rhombotin gene family as a class of T-cell oncogenes with duplicated cysteine-rich LIM domains.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-20 NP denotes The rhombotin family
C3 136-141 NP denotes 11p15
C4 146-151 NP denotes 11p13
C2 118-151 NP denotes human chromosomes 11p15 and 11p13
C5 229-262 NP denotes human chromosome 11 at band 11p15
C6 272-290 NP denotes the rhombotin gene
C7 292-301 NP denotes This gene
C8 365-376 NP denotes LIM domains
C9 378-383 NP denotes which
C10 484-502 NP denotes the rhombotin gene
C11 527-539 NP denotes One of these
C12 552-558 NP denotes Rhom-2
C13 574-607 NP denotes human chromosome 11 at band 11p13
C14 708-713 NP denotes 11p13
C15 730-745 NP denotes the Rhom-2 gene
C16 801-810 NP denotes rhombotin
C17 823-855 NP denotes tandem cysteine-rich LIM domains
C18 857-868 NP denotes Rhom-2 mRNA
C19 1010-1024 NP denotes The other gene
C20 1037-1043 NP denotes Rhom-3
C21 1133-1148 NP denotes the Rhom-2 gene
C22 1250-1268 NP denotes the rhombotin gene
C23 1410-1463 NP denotes chromosome bands 11p15 (rhombotin) and 11p13 (Rhom-2)
C24 1542-1547 NP denotes 11p15
C25 1596-1621 NP denotes the rhombotin gene family
C26 1669-1694 NP denotes cysteine-rich LIM domains
R1 C5 C2 coref-other human chromosome 11 at band 11p15,human chromosomes 11p15 and 11p13
R2 C7 C6 coref-ident This gene,the rhombotin gene
R3 C9 C8 coref-relat which,LIM domains
R4 C10 C6 coref-ident the rhombotin gene,the rhombotin gene
R5 C12 C11 coref-appos Rhom-2,One of these
R6 C13 C2 coref-other human chromosome 11 at band 11p13,human chromosomes 11p15 and 11p13
R7 C14 C4 coref-ident 11p13,11p13
R8 C15 C12 coref-ident the Rhom-2 gene,Rhom-2
R9 C16 C10 coref-ident rhombotin,the rhombotin gene
R10 C17 C8 coref-ident tandem cysteine-rich LIM domains,LIM domains
R11 C18 C12 coref-other Rhom-2 mRNA,Rhom-2
R12 C20 C19 coref-appos Rhom-3,The other gene
R13 C21 C15 coref-ident the Rhom-2 gene,the Rhom-2 gene
R14 C22 C16 coref-ident the rhombotin gene,rhombotin
R15 C23 C2 coref-other chromosome bands 11p15 (rhombotin) and 11p13 (Rhom-2),human chromosomes 11p15 and 11p13
R16 C24 C3 coref-ident 11p15,11p15
R17 C25 C1 coref-ident the rhombotin gene family,The rhombotin family
R18 C26 C17 coref-ident cysteine-rich LIM domains,tandem cysteine-rich LIM domains

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 4-20 DNA_family_or_group denotes rhombotin family
T2 24-32 amino_acid_monomer denotes cysteine
T3 93-114 DNA_domain_or_region denotes T-cell translocations
T4 155-180 other_name denotes chromosomal translocation
T5 186-201 other_name denotes T-cell leukemia
T6 216-225 DNA_domain_or_region denotes short arm
T7 229-248 DNA_molecule denotes human chromosome 11
T8 252-262 DNA_domain_or_region denotes band 11p15
T9 276-290 DNA_domain_or_region denotes rhombotin gene
T10 336-344 amino_acid_monomer denotes cysteine
T11 365-376 protein_domain_or_region denotes LIM domains
T12 401-422 protein_family_or_group denotes zinc-binding proteins
T13 430-449 protein_domain_or_region denotes iron-sulfur centers
T14 453-464 protein_molecule denotes ferredoxins
T15 488-502 DNA_domain_or_region denotes rhombotin gene
T16 552-558 DNA_domain_or_region denotes Rhom-2
T17 574-593 DNA_molecule denotes human chromosome 11
T18 597-607 DNA_domain_or_region denotes band 11p13
T19 628-667 DNA_domain_or_region denotes T-cell leukemia-specific translocations
T20 708-713 DNA_domain_or_region denotes 11p13
T21 734-740 DNA_domain_or_region denotes Rhom-2
T22 801-810 DNA_domain_or_region denotes rhombotin
T23 823-829 DNA_domain_or_region denotes tandem
T24 830-838 amino_acid_monomer denotes cysteine
T25 844-855 protein_domain_or_region denotes LIM domains
T26 857-863 DNA_domain_or_region denotes Rhom-2
T27 885-908 other_name denotes early mouse development
T28 912-934 body_part denotes central nervous system
T29 936-940 body_part denotes lung
T30 942-948 body_part denotes kidney
T31 950-955 body_part denotes liver
T32 961-967 body_part denotes spleen
T33 1002-1008 body_part denotes thymus
T34 1037-1043 DNA_domain_or_region denotes Rhom-3
T35 1102-1112 DNA_domain_or_region denotes LIM domain
T36 1116-1125 DNA_domain_or_region denotes rhombotin
T37 1137-1143 DNA_domain_or_region denotes Rhom-2
T38 1174-1192 other_name denotes chromosomal damage
T39 1196-1209 cell_type denotes T-cell tumors
T40 1254-1263 DNA_domain_or_region denotes rhombotin
T41 1326-1335 DNA_domain_or_region denotes rhombotin
T42 1410-1432 DNA_domain_or_region denotes chromosome bands 11p15
T43 1434-1443 DNA_domain_or_region denotes rhombotin
T44 1449-1454 DNA_domain_or_region denotes 11p13
T45 1456-1462 DNA_domain_or_region denotes Rhom-2
T46 1516-1531 other_name denotes T-cell leukemia
T47 1542-1554 DNA_domain_or_region denotes 11p15 target
T48 1600-1609 DNA_domain_or_region denotes rhombotin
T49 1636-1652 DNA_family_or_group denotes T-cell oncogenes
T50 1669-1677 amino_acid_monomer denotes cysteine
T51 1683-1694 protein_domain_or_region denotes LIM domains