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PubMed:2033090 JSONTXT

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PubmedHPO

Id Subject Object Predicate Lexical cue
T1 313-318 HP_0002664 denotes tumor
T2 492-501 HP_0002665 denotes lymphomas
T3 550-555 HP_0002664 denotes tumor
T4 666-675 HP_0002665 denotes lymphomas
T5 774-782 HP_0002664 denotes tumorous
T6 974-979 HP_0002664 denotes tumor
T7 1032-1049 HP_0002202 denotes Pleural effusions
T8 1072-1085 HP_0003002 denotes breast cancer
T9 1072-1085 HP_0100013 denotes breast cancer
T10 1079-1085 HP_0002664 denotes cancer
T11 1270-1275 HP_0002664 denotes tumor
T12 1413-1418 HP_0002664 denotes tumor
T13 1461-1466 HP_0002664 denotes tumor
T14 1482-1499 HP_0002202 denotes pleural effusions
T15 1693-1699 HP_0002664 denotes cancer

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 17-52 protein denotes estrogen and progesterone receptors
T2 64-88 protein denotes Ki-67 and p-145 antigens
T3 92-110 cell_type denotes single tumor cells
T4 224-232 protein denotes antigens
T5 263-289 cell_type denotes isolated white blood cells
T6 306-324 cell_type denotes single tumor cells
T7 379-384 protein denotes Ki-67
T8 389-399 protein denotes anti-p-145
T9 550-561 cell_type denotes tumor cells
T10 740-764 cell_type denotes normal mesothelial cells
T11 815-823 protein denotes estrogen
T12 828-850 protein denotes progesterone receptors
T13 852-854 protein denotes ER
T14 859-861 protein denotes PR
T15 974-985 cell_type denotes tumor cells
T16 1099-1101 protein denotes ER
T17 1125-1127 protein denotes PR
T18 1213-1215 protein denotes ER
T19 1220-1222 protein denotes PR
T20 1237-1254 protein denotes hormone receptors
T21 1294-1296 protein denotes ER
T22 1306-1308 protein denotes PR
T23 1461-1472 cell_type denotes tumor cells
T24 1550-1575 protein denotes hormone receptor proteins

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-164 Sentence denotes Demonstration of estrogen and progesterone receptors as well as Ki-67 and p-145 antigens in single tumor cells from blood and pleural effusions using a slide assay.
S2 165-358 Sentence denotes We describe a slide assay that allows the demonstration of antigens localized in the nucleus from isolated white blood cells as well as from single tumor cells derived from malignant effusions.
S3 359-502 Sentence denotes With the antibodies Ki-67 and anti-p-145 an increased rate of nuclear and nucleolar staining resulted in cells from highly malignant lymphomas.
S4 503-599 Sentence denotes An almost identical reaction was obtained when tumor cells from malignant effusions were tested.
S5 600-797 Sentence denotes Cells isolated from the blood of patients with leukemic spread of lymphomas of low malignancy yielded a weak staining comparable to that of normal mesothelial cells from non-tumorous cavity fluids.
S6 798-927 Sentence denotes The detection of estrogen and progesterone receptors (ER and PR) localized in the cell nucleus can be achieved by the same assay.
S7 928-1031 Sentence denotes The reaction is enhanced by incubation of the tumor cells for 30 min at 37 degrees C prior to fixation.
S8 1032-1098 Sentence denotes Pleural effusions from 20 patients with breast cancer were tested.
S9 1099-1165 Sentence denotes ER was positive in 13 and PR was positive in 12 of the 20 samples.
S10 1166-1232 Sentence denotes In 5 cases there was a divergent reaction with ER and PR antibody.
S11 1233-1333 Sentence denotes The hormone receptors of the primary tumor were known in 15 (ER) and 14 (PR) patients, respectively.
S12 1334-1500 Sentence denotes In each cohort there was only one case with a negative reaction of the primary tumor and a positive reaction with the isolated tumor cells from the pleural effusions.
S13 1501-1700 Sentence denotes These results indicate that the demonstration of hormone receptor proteins in cells from malignant effusions is possible and that there is a correlation with the status of the primary site of cancer.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 17-52 NP denotes estrogen and progesterone receptors
C2 64-88 NP denotes Ki-67 and p-145 antigens
C3 92-110 NP denotes single tumor cells
C4 126-143 NP denotes pleural effusions
C5 150-163 NP denotes a slide assay
C6 177-190 NP denotes a slide assay
C7 191-195 NP denotes that
C8 306-324 NP denotes single tumor cells
C9 338-357 NP denotes malignant effusions
C10 364-399 NP denotes the antibodies Ki-67 and anti-p-145
C12 567-586 NP denotes malignant effusions
C11 550-586 NP denotes tumor cells from malignant effusions
C13 702-717 NP denotes a weak staining
C14 732-736 NP denotes that
C16 852-854 NP denotes ER
C17 859-861 NP denotes PR
C15 815-862 NP denotes estrogen and progesterone receptors (ER and PR)
C18 912-926 NP denotes the same assay
C19 970-985 NP denotes the tumor cells
C20 1032-1049 NP denotes Pleural effusions
C21 1099-1101 NP denotes ER
C22 1125-1127 NP denotes PR
C23 1213-1215 NP denotes ER
C24 1220-1222 NP denotes PR
C25 1258-1275 NP denotes the primary tumor
C26 1293-1297 NP denotes (ER)
C27 1305-1309 NP denotes (PR)
C28 1401-1418 NP denotes the primary tumor
C29 1448-1472 NP denotes the isolated tumor cells
C30 1478-1499 NP denotes the pleural effusions
C31 1590-1609 NP denotes malignant effusions
R1 C6 C5 coref-ident a slide assay,a slide assay
R2 C7 C6 coref-relat that,a slide assay
R3 C8 C3 coref-ident single tumor cells,single tumor cells
R4 C10 C2 coref-ident the antibodies Ki-67 and anti-p-145,Ki-67 and p-145 antigens
R5 C12 C9 coref-ident malignant effusions,malignant effusions
R6 C14 C13 coref-pron that,a weak staining
R7 C16 C15 coref-other ER,estrogen and progesterone receptors (ER and PR)
R8 C17 C15 coref-other PR,estrogen and progesterone receptors (ER and PR)
R9 C15 C1 coref-ident estrogen and progesterone receptors (ER and PR),estrogen and progesterone receptors
R10 C18 C6 coref-ident the same assay,a slide assay
R11 C19 C11 coref-ident the tumor cells,tumor cells from malignant effusions
R12 C20 C4 coref-ident Pleural effusions,pleural effusions
R13 C21 C16 coref-ident ER,ER
R14 C22 C17 coref-ident PR,PR
R15 C23 C21 coref-ident ER,ER
R16 C24 C22 coref-ident PR,PR
R17 C26 C23 coref-ident (ER),ER
R18 C27 C24 coref-ident (PR),PR
R19 C28 C25 coref-ident the primary tumor,the primary tumor
R20 C29 C19 coref-ident the isolated tumor cells,the tumor cells
R21 C30 C20 coref-ident the pleural effusions,Pleural effusions
R22 C31 C12 coref-ident malignant effusions,malignant effusions

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 92-110 cell_type denotes single tumor cells
T2 152-163 other_name denotes slide assay
T3 224-232 protein_family_or_group denotes antigens
T4 250-257 cell_component denotes nucleus
T5 263-289 cell_type denotes isolated white blood cells
T6 306-324 cell_type denotes single tumor cells
T7 338-357 other_name denotes malignant effusions
T8 379-384 protein_molecule denotes Ki-67
T9 389-399 protein_molecule denotes anti-p-145
T10 421-428 other_name denotes nuclear
T11 433-451 other_name denotes nucleolar staining
T12 475-501 tissue denotes highly malignant lymphomas
T13 550-561 cell_type denotes tumor cells
T14 567-586 other_name denotes malignant effusions
T15 624-629 tissue denotes blood
T16 633-641 multi_cell denotes patients
T17 647-662 other_name denotes leukemic spread
T18 666-675 tissue denotes lymphomas
T19 679-693 other_name denotes low malignancy
T20 740-764 cell_type denotes normal mesothelial cells
T21 770-796 tissue denotes non-tumorous cavity fluids
T22 815-823 protein_family_or_group denotes estrogen
T23 828-840 lipid denotes progesterone
T24 852-854 protein_family_or_group denotes ER
T25 859-861 protein_family_or_group denotes PR
T26 880-884 cell_component denotes cell
T27 885-892 cell_component denotes nucleus
T28 974-985 cell_type denotes tumor cells
T29 1032-1049 other_name denotes Pleural effusions
T30 1058-1066 multi_cell denotes patients
T31 1072-1085 other_name denotes breast cancer
T32 1099-1101 protein_family_or_group denotes ER
T33 1125-1127 protein_family_or_group denotes PR
T34 1213-1215 protein_family_or_group denotes ER
T35 1220-1222 protein_family_or_group denotes PR
T36 1237-1254 protein_family_or_group denotes hormone receptors
T37 1262-1275 tissue denotes primary tumor
T38 1294-1296 protein_family_or_group denotes ER
T39 1306-1308 protein_family_or_group denotes PR
T40 1310-1318 multi_cell denotes patients
T41 1461-1472 cell_type denotes tumor cells
T42 1482-1499 other_name denotes pleural effusions
T43 1550-1575 protein_family_or_group denotes hormone receptor proteins
T44 1590-1609 other_name denotes malignant effusions
T45 1677-1689 other_name denotes primary site
T46 1693-1699 other_name denotes cancer