> top > docs > PubMed:20220098 > annotations

PubMed:20220098 JSONTXT

Annnotations TAB JSON ListView MergeView

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 130-146 xzyao:1725 denotes flowering plants
M_1 130-139 funRiceGene:504 denotes flowering
M_2 200-225 xzyao:34622 denotes important agronomic trait
M_3 249-256 WTO:0000048, funRiceGene:27 denotes quality
M_4 534-549 TO:0002661 denotes seed maturation
M_5 751-766 TO:0002661 denotes seed maturation
M_6 1162-1178 xzyao:16169 denotes rufipogon allele
M_7 1113-1121 xzyao:17964 denotes at least
M_8 236-247 funRiceGene:312, xzyao:28456 denotes grain yield
M_9 242-247 funRiceGene:377 denotes yield
M_10 236-241 funRiceGene:91 denotes grain
M_11 751-774 xzyao:39831 denotes seed maturation program
M_12 51-55 PO:0009010, funRiceGene:180 denotes seed
M_13 92-96 PO:0009010, funRiceGene:180 denotes Seed
M_14 385-389 PO:0009010, funRiceGene:180 denotes seed
M_15 534-538 PO:0009010, funRiceGene:180 denotes seed
M_16 608-612 PO:0009010, funRiceGene:180 denotes seed
M_17 751-755 PO:0009010, funRiceGene:180 denotes seed
M_18 303-321 xzyao:12182 denotes quantitative trait
M_19 220-225 WTO:0000006 denotes trait
M_20 316-321 WTO:0000006 denotes trait
M_21 51-64 TO:0000253, xzyao:30928 denotes seed dormancy
M_22 92-105 TO:0000253, xzyao:30928 denotes Seed dormancy
M_23 385-398 TO:0000253, xzyao:30928 denotes seed dormancy
M_24 608-621 TO:0000253, xzyao:30928 denotes seed dormancy
M_25 27-38 xzyao:36395 denotes a regulator
M_26 69-82 funRiceGene:57 denotes domestication
M_27 1298-1311 funRiceGene:57 denotes domestication
M_28 1254-1272 xzyao:1888 denotes possible selection
M_29 850-866 xzyao:16136 denotes reduced dormancy
M_30 56-64 funRiceGene:493 denotes dormancy
M_31 97-105 funRiceGene:493 denotes dormancy
M_32 390-398 funRiceGene:493 denotes dormancy
M_33 613-621 funRiceGene:493 denotes dormancy
M_34 735-743 funRiceGene:493 denotes dormancy
M_35 858-866 funRiceGene:493 denotes dormancy
M_36 303-327 xzyao:8898 denotes quantitative trait locus
M_37 298-327 xzyao:29806 denotes rice quantitative trait locus
M_38 951-963 xzyao:26940 denotes indica group
M_39 776-794 xzyao:15494 denotes Japonica cultivars
M_40 505-510 hunflair:NA:Gene denotes OsVP1
M_41 21-25 hunflair:NA:Gene denotes Sdr4
M_42 329-333 hunflair:NA:Gene denotes Sdr4
M_43 462-466 hunflair:NA:Gene denotes Sdr4
M_44 693-697 hunflair:NA:Gene denotes Sdr4
M_45 828-832 hunflair:NA:Gene denotes Sdr4
M_46 914-918 hunflair:NA:Gene denotes Sdr4
M_47 1068-1072 hunflair:NA:Gene denotes Sdr4
M_48 902-908 hunflair:NA:Gene denotes Srd4-k
M_49 1001-1007 hunflair:NA:Gene denotes Srd4-k
M_50 1043-1058 hunflair:NA:Species denotes Oryza rufipogon
M_51 828-834 hunflair:NA:Gene denotes Sdr4-n
M_52 914-920 hunflair:NA:Gene denotes Sdr4-n
M_53 1068-1074 hunflair:NA:Gene denotes Sdr4-n
M_54 407-415 hunflair:NA:Species denotes japonica
M_55 1159-1171 hunflair:NA:Species denotes O. rufipogon
M_56 86-90 hunflair:NA:Species denotes rice
M_57 298-302 hunflair:NA:Species denotes rice
M_58 433-439 hunflair:NA:Species denotes indica
M_59 951-957 hunflair:NA:Species denotes indica
M_60 776-784 hunflair:NA:Species denotes Japonica
M_61 1043-1058 pubtator:4529:Species denotes Oryza rufipogon
M_62 130-146 pubtator:3398:Species denotes flowering plants
M_63 21-25 pubtator:9269794:Gene denotes Sdr4
M_64 329-333 pubtator:9269794:Gene denotes Sdr4
M_65 462-466 pubtator:9269794:Gene denotes Sdr4
M_66 693-697 pubtator:9269794:Gene denotes Sdr4
M_67 828-832 pubtator:9269794:Gene denotes Sdr4
M_68 914-918 pubtator:9269794:Gene denotes Sdr4
M_69 1068-1072 pubtator:9269794:Gene denotes Sdr4
M_70 86-90 pubtator:4530:Species denotes rice
M_71 298-302 pubtator:4530:Species denotes rice
M_72 1159-1171 pubtator:4529:Species denotes O. rufipogon

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 220-225 WTO:0000006 denotes trait
M_1 316-321 WTO:0000006 denotes trait
M_2 1298-1311 funRiceGene:57 denotes domestication
M_3 92-105 xzyao:12682 denotes Seed dormancy
M_4 385-398 xzyao:12682 denotes seed dormancy
M_5 608-621 xzyao:12682 denotes seed dormancy
M_6 92-105 TO:0000253, xzyao:6322 denotes Seed dormancy
M_7 385-398 TO:0000253, xzyao:6322 denotes seed dormancy
M_8 608-621 TO:0000253, xzyao:6322 denotes seed dormancy
M_9 236-241 funRiceGene:91 denotes grain
M_10 885-900 xzyao:14672 denotes Kasalath allele
M_11 751-766 TO:0002661, xzyao:11872 denotes seed maturation
M_12 97-105 funRiceGene:493 denotes dormancy
M_13 390-398 funRiceGene:493 denotes dormancy
M_14 613-621 funRiceGene:493 denotes dormancy
M_15 735-743 funRiceGene:493 denotes dormancy
M_16 92-96 PO:0009010, funRiceGene:180 denotes Seed
M_17 385-389 PO:0009010, funRiceGene:180 denotes seed
M_18 534-538 PO:0009010, funRiceGene:180 denotes seed
M_19 608-612 PO:0009010, funRiceGene:180 denotes seed
M_20 751-755 PO:0009010, funRiceGene:180 denotes seed
M_21 130-139 funRiceGene:504 denotes flowering
M_22 828-834 hunflair:NA:Gene denotes Sdr4-n
M_23 914-920 hunflair:NA:Gene denotes Sdr4-n
M_24 1068-1074 hunflair:NA:Gene denotes Sdr4-n
M_25 902-908 hunflair:NA:Gene denotes Srd4-k
M_26 1001-1007 hunflair:NA:Gene denotes Srd4-k
M_27 86-90 hunflair:NA:Species denotes rice
M_28 298-302 hunflair:NA:Species denotes rice
M_29 21-25 hunflair:NA:Gene denotes Sdr4
M_30 329-333 hunflair:NA:Gene denotes Sdr4
M_31 462-466 hunflair:NA:Gene denotes Sdr4
M_32 693-697 hunflair:NA:Gene denotes Sdr4
M_33 828-832 hunflair:NA:Gene denotes Sdr4
M_34 914-918 hunflair:NA:Gene denotes Sdr4
M_35 1068-1072 hunflair:NA:Gene denotes Sdr4
M_36 433-439 hunflair:NA:Species denotes indica
M_37 951-957 hunflair:NA:Species denotes indica
M_38 1043-1058 hunflair:NA:Species denotes Oryza rufipogon
M_39 776-784 hunflair:NA:Species denotes Japonica
M_40 407-415 hunflair:NA:Species denotes japonica
M_41 505-510 hunflair:NA:Gene denotes OsVP1
M_42 1159-1171 hunflair:NA:Species denotes O. rufipogon
M_43 130-146 pubtator:3398:Species denotes flowering plants
M_44 1159-1171 pubtator:4529:Species denotes O. rufipogon
M_45 1043-1058 pubtator:4529:Species denotes Oryza rufipogon
M_46 86-90 pubtator:4530:Species denotes rice
M_47 298-302 pubtator:4530:Species denotes rice
M_48 21-25 pubtator:9269794:Gene denotes Sdr4
M_49 329-333 pubtator:9269794:Gene denotes Sdr4
M_50 462-466 pubtator:9269794:Gene denotes Sdr4
M_51 693-697 pubtator:9269794:Gene denotes Sdr4
M_52 828-832 pubtator:9269794:Gene denotes Sdr4
M_53 914-918 pubtator:9269794:Gene denotes Sdr4
M_54 1068-1072 pubtator:9269794:Gene denotes Sdr4

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 21-25 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T2 329-333 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T3 462-466 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T4 505-510 http://identifiers.org/oryzabase.gene/2104 denotes OsVP1
T5 693-697 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T6 828-832 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T7 914-918 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T8 1068-1072 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T45179 21-25 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T90706 329-333 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T47838 462-466 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T46668 505-510 http://identifiers.org/rapdb.locus/Os01g0911700 denotes OsVP1
T98952 693-697 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T33232 828-832 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T42317 914-918 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T82311 1068-1072 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 828-834 hunflair:NA:Gene denotes Sdr4-n
M_1 914-920 hunflair:NA:Gene denotes Sdr4-n
M_2 1068-1074 hunflair:NA:Gene denotes Sdr4-n
M_3 1043-1058 hunflair:NA:Species denotes Oryza rufipogon
M_4 1159-1171 hunflair:NA:Species denotes O. rufipogon
M_5 433-439 hunflair:NA:Species denotes indica
M_6 951-957 hunflair:NA:Species denotes indica
M_7 407-415 hunflair:NA:Species denotes japonica
M_8 86-90 hunflair:NA:Species denotes rice
M_9 298-302 hunflair:NA:Species denotes rice
M_10 902-908 hunflair:NA:Gene denotes Srd4-k
M_11 1001-1007 hunflair:NA:Gene denotes Srd4-k
M_12 21-25 hunflair:NA:Gene denotes Sdr4
M_13 329-333 hunflair:NA:Gene denotes Sdr4
M_14 462-466 hunflair:NA:Gene denotes Sdr4
M_15 693-697 hunflair:NA:Gene denotes Sdr4
M_16 828-832 hunflair:NA:Gene denotes Sdr4
M_17 914-918 hunflair:NA:Gene denotes Sdr4
M_18 1068-1072 hunflair:NA:Gene denotes Sdr4
M_19 505-510 hunflair:NA:Gene denotes OsVP1
M_20 776-784 hunflair:NA:Species denotes Japonica

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 21-25 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T2 236-247 http://identifiers.org/oryzabase.gene/2034 denotes grain yield
T3 329-333 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T4 462-466 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T5 505-510 http://identifiers.org/oryzabase.gene/2104 denotes OsVP1
T6 693-697 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T7 828-832 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T8 914-918 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T9 1068-1072 http://identifiers.org/oryzabase.gene/8787 denotes Sdr4
T43270 21-25 http://identifiers.org/ricegap/LOC_Os07g39700 denotes Sdr4
T5141 236-247 http://identifiers.org/ricegap/LOC_Os08g07740 denotes grain yield
T26288 329-333 http://identifiers.org/ricegap/LOC_Os07g39700 denotes Sdr4
T90480 462-466 http://identifiers.org/ricegap/LOC_Os07g39700 denotes Sdr4
T66132 505-510 http://identifiers.org/ricegap/LOC_Os01g68370 denotes OsVP1
T65089 693-697 http://identifiers.org/ricegap/LOC_Os07g39700 denotes Sdr4
T45605 828-832 http://identifiers.org/ricegap/LOC_Os07g39700 denotes Sdr4
T58062 914-918 http://identifiers.org/ricegap/LOC_Os07g39700 denotes Sdr4
T80616 1068-1072 http://identifiers.org/ricegap/LOC_Os07g39700 denotes Sdr4
T88921 21-25 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T94478 236-247 http://identifiers.org/rapdb.locus/Os08g0174500 denotes grain yield
T75983 329-333 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T90615 462-466 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T81714 505-510 http://identifiers.org/rapdb.locus/Os01g0911700 denotes OsVP1
T63791 693-697 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T30614 828-832 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T70186 914-918 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T71386 1068-1072 http://identifiers.org/rapdb.locus/Os07g0585700 denotes Sdr4
T33419 21-25 http://identifiers.org/uniprot/Q8H5K8 denotes Sdr4
T46089 329-333 http://identifiers.org/uniprot/Q8H5K8 denotes Sdr4
T99150 462-466 http://identifiers.org/uniprot/Q8H5K8 denotes Sdr4
T30623 505-510 http://identifiers.org/uniprot/P37398 denotes OsVP1
T78713 693-697 http://identifiers.org/uniprot/Q8H5K8 denotes Sdr4
T81316 828-832 http://identifiers.org/uniprot/Q8H5K8 denotes Sdr4
T5991 914-918 http://identifiers.org/uniprot/Q8H5K8 denotes Sdr4
T80940 1068-1072 http://identifiers.org/uniprot/Q8H5K8 denotes Sdr4
M_0 828-834 hunflair:NA:Gene denotes Sdr4-n
M_1 914-920 hunflair:NA:Gene denotes Sdr4-n
M_2 1068-1074 hunflair:NA:Gene denotes Sdr4-n
M_3 1043-1058 hunflair:NA:Species denotes Oryza rufipogon
M_4 1159-1171 hunflair:NA:Species denotes O. rufipogon
M_5 433-439 hunflair:NA:Species denotes indica
M_6 951-957 hunflair:NA:Species denotes indica
M_7 407-415 hunflair:NA:Species denotes japonica
M_8 86-90 hunflair:NA:Species denotes rice
M_9 298-302 hunflair:NA:Species denotes rice
M_10 902-908 hunflair:NA:Gene denotes Srd4-k
M_11 1001-1007 hunflair:NA:Gene denotes Srd4-k
M_12 21-25 hunflair:NA:Gene denotes Sdr4
M_13 329-333 hunflair:NA:Gene denotes Sdr4
M_14 462-466 hunflair:NA:Gene denotes Sdr4
M_15 693-697 hunflair:NA:Gene denotes Sdr4
M_16 828-832 hunflair:NA:Gene denotes Sdr4
M_17 914-918 hunflair:NA:Gene denotes Sdr4
M_18 1068-1072 hunflair:NA:Gene denotes Sdr4
M_19 505-510 hunflair:NA:Gene denotes OsVP1
M_20 776-784 hunflair:NA:Species denotes Japonica

OryzaGP

Id Subject Object Predicate Lexical cue
T1 462-466 gene denotes Sdr4
T2 505-510 gene denotes OsVP1
T3 693-697 gene denotes Sdr4
T4 828-832 gene denotes Sdr4
T5 914-918 gene denotes Sdr4
T6 1068-1072 gene denotes Sdr4

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-91 Sentence denotes Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.
T2 92-185 Sentence denotes Seed dormancy provides a strategy for flowering plants to survive adverse natural conditions.
T3 186-285 Sentence denotes It is also an important agronomic trait affecting grain yield, quality, and processing performance.
T4 286-461 Sentence denotes We cloned a rice quantitative trait locus, Sdr4, which contributes substantially to differences in seed dormancy between japonica (Nipponbare) and indica (Kasalath) cultivars.
T5 462-775 Sentence denotes Sdr4 expression is positively regulated by OsVP1, a global regulator of seed maturation, and in turn positively regulates potential regulators of seed dormancy and represses the expression of postgerminative genes, suggesting that Sdr4 acts as an intermediate regulator of dormancy in the seed maturation program.
T6 776-1000 Sentence denotes Japonica cultivars have only the Nipponbare allele (Sdr4-n), which endows reduced dormancy, whereas both the Kasalath allele (Srd4-k) and Sdr4-n are widely distributed in the indica group, indicating prevalent introgression.
T7 1001-1209 Sentence denotes Srd4-k also is found in the wild ancestor Oryza rufipogon, whereas Sdr4-n appears to have been produced through at least two mutation events from the closest O. rufipogon allele among the accessions examined.
T8 1210-1320 Sentence denotes These results are discussed with respect to possible selection of the allele during the domestication process.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-91 Sentence denotes Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.
T2 92-185 Sentence denotes Seed dormancy provides a strategy for flowering plants to survive adverse natural conditions.
T3 186-285 Sentence denotes It is also an important agronomic trait affecting grain yield, quality, and processing performance.
T4 286-461 Sentence denotes We cloned a rice quantitative trait locus, Sdr4, which contributes substantially to differences in seed dormancy between japonica (Nipponbare) and indica (Kasalath) cultivars.
T5 462-775 Sentence denotes Sdr4 expression is positively regulated by OsVP1, a global regulator of seed maturation, and in turn positively regulates potential regulators of seed dormancy and represses the expression of postgerminative genes, suggesting that Sdr4 acts as an intermediate regulator of dormancy in the seed maturation program.
T6 776-1000 Sentence denotes Japonica cultivars have only the Nipponbare allele (Sdr4-n), which endows reduced dormancy, whereas both the Kasalath allele (Srd4-k) and Sdr4-n are widely distributed in the indica group, indicating prevalent introgression.
T7 1001-1209 Sentence denotes Srd4-k also is found in the wild ancestor Oryza rufipogon, whereas Sdr4-n appears to have been produced through at least two mutation events from the closest O. rufipogon allele among the accessions examined.
T8 1210-1320 Sentence denotes These results are discussed with respect to possible selection of the allele during the domestication process.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-91 Sentence denotes Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.
T2 92-185 Sentence denotes Seed dormancy provides a strategy for flowering plants to survive adverse natural conditions.
T3 186-285 Sentence denotes It is also an important agronomic trait affecting grain yield, quality, and processing performance.
T4 286-461 Sentence denotes We cloned a rice quantitative trait locus, Sdr4, which contributes substantially to differences in seed dormancy between japonica (Nipponbare) and indica (Kasalath) cultivars.
T5 462-775 Sentence denotes Sdr4 expression is positively regulated by OsVP1, a global regulator of seed maturation, and in turn positively regulates potential regulators of seed dormancy and represses the expression of postgerminative genes, suggesting that Sdr4 acts as an intermediate regulator of dormancy in the seed maturation program.
T6 776-1000 Sentence denotes Japonica cultivars have only the Nipponbare allele (Sdr4-n), which endows reduced dormancy, whereas both the Kasalath allele (Srd4-k) and Sdr4-n are widely distributed in the indica group, indicating prevalent introgression.
T7 1001-1209 Sentence denotes Srd4-k also is found in the wild ancestor Oryza rufipogon, whereas Sdr4-n appears to have been produced through at least two mutation events from the closest O. rufipogon allele among the accessions examined.
T8 1210-1320 Sentence denotes These results are discussed with respect to possible selection of the allele during the domestication process.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-91 Sentence denotes Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.
T2 92-185 Sentence denotes Seed dormancy provides a strategy for flowering plants to survive adverse natural conditions.
T3 186-285 Sentence denotes It is also an important agronomic trait affecting grain yield, quality, and processing performance.
T4 286-461 Sentence denotes We cloned a rice quantitative trait locus, Sdr4, which contributes substantially to differences in seed dormancy between japonica (Nipponbare) and indica (Kasalath) cultivars.
T5 462-775 Sentence denotes Sdr4 expression is positively regulated by OsVP1, a global regulator of seed maturation, and in turn positively regulates potential regulators of seed dormancy and represses the expression of postgerminative genes, suggesting that Sdr4 acts as an intermediate regulator of dormancy in the seed maturation program.
T6 776-1000 Sentence denotes Japonica cultivars have only the Nipponbare allele (Sdr4-n), which endows reduced dormancy, whereas both the Kasalath allele (Srd4-k) and Sdr4-n are widely distributed in the indica group, indicating prevalent introgression.
T7 1001-1209 Sentence denotes Srd4-k also is found in the wild ancestor Oryza rufipogon, whereas Sdr4-n appears to have been produced through at least two mutation events from the closest O. rufipogon allele among the accessions examined.
T8 1210-1320 Sentence denotes These results are discussed with respect to possible selection of the allele during the domestication process.