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PubMed:20212155 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-61 Sentence denotes Monomeric red fluorescent proteins with a large Stokes shift.
TextSentencer_T2 62-158 Sentence denotes Two-photon microscopy has advanced fluorescence imaging of cellular processes in living animals.
TextSentencer_T3 159-374 Sentence denotes Fluorescent proteins in the blue-green wavelength range are widely used in two-photon microscopy; however, the use of red fluorescent proteins is limited by the low power output of Ti-Sapphire lasers above 1,000 nm.
TextSentencer_T4 375-584 Sentence denotes To overcome this limitation we have developed two red fluorescent proteins, LSS-mKate1 and LSS-mKate2, which possess large Stokes shifts with excitation/emission maxima at 463/624 and 460/605 nm, respectively.
TextSentencer_T5 585-711 Sentence denotes These LSS-mKates are characterized by high pH stability, photostability, rapid chromophore maturation, and monomeric behavior.
TextSentencer_T6 712-834 Sentence denotes They lack absorbance in the green region, providing an additional red color to the commonly used red fluorescent proteins.
TextSentencer_T7 835-991 Sentence denotes Substantial overlap between the two-photon excitation spectra of the LSS-mKates and blue-green fluorophores enables multicolor imaging using a single laser.
TextSentencer_T8 992-1190 Sentence denotes We applied this approach to a mouse xenograft model of breast cancer to intravitally study the motility and Golgi-nucleus alignment of tumor cells as a function of their distance from blood vessels.
TextSentencer_T9 1191-1313 Sentence denotes Our data indicate that within 40 mum the breast cancer cells show significant polarization towards vessels in living mice.
T1 0-61 Sentence denotes Monomeric red fluorescent proteins with a large Stokes shift.
T2 62-158 Sentence denotes Two-photon microscopy has advanced fluorescence imaging of cellular processes in living animals.
T3 159-374 Sentence denotes Fluorescent proteins in the blue-green wavelength range are widely used in two-photon microscopy; however, the use of red fluorescent proteins is limited by the low power output of Ti-Sapphire lasers above 1,000 nm.
T4 375-584 Sentence denotes To overcome this limitation we have developed two red fluorescent proteins, LSS-mKate1 and LSS-mKate2, which possess large Stokes shifts with excitation/emission maxima at 463/624 and 460/605 nm, respectively.
T5 585-711 Sentence denotes These LSS-mKates are characterized by high pH stability, photostability, rapid chromophore maturation, and monomeric behavior.
T6 712-834 Sentence denotes They lack absorbance in the green region, providing an additional red color to the commonly used red fluorescent proteins.
T7 835-991 Sentence denotes Substantial overlap between the two-photon excitation spectra of the LSS-mKates and blue-green fluorophores enables multicolor imaging using a single laser.
T8 992-1190 Sentence denotes We applied this approach to a mouse xenograft model of breast cancer to intravitally study the motility and Golgi-nucleus alignment of tumor cells as a function of their distance from blood vessels.
T9 1191-1313 Sentence denotes Our data indicate that within 40 mum the breast cancer cells show significant polarization towards vessels in living mice.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 1224-1227 gene:56925 denotes mum
T1 1232-1245 disease:C0006142 denotes breast cancer
T2 1224-1227 gene:56925 denotes mum
T3 1232-1245 disease:C0678222 denotes breast cancer
R1 T0 T1 associated_with mum,breast cancer
R2 T2 T3 associated_with mum,breast cancer

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 1047-1060 HP_0003002 denotes breast cancer
T2 1047-1060 HP_0100013 denotes breast cancer
T3 1054-1060 HP_0002664 denotes cancer
T4 1127-1132 HP_0002664 denotes tumor
T5 1232-1245 HP_0003002 denotes breast cancer
T6 1232-1245 HP_0100013 denotes breast cancer
T7 1239-1245 HP_0002664 denotes cancer

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
20212155-8#33#36#gene56925 1224-1227 gene56925 denotes mum
20212155-8#41#54#diseaseC0006142 1232-1245 diseaseC0006142 denotes breast cancer
20212155-8#41#54#diseaseC0678222 1232-1245 diseaseC0678222 denotes breast cancer
33#36#gene5692541#54#diseaseC0006142 20212155-8#33#36#gene56925 20212155-8#41#54#diseaseC0006142 associated_with mum,breast cancer
33#36#gene5692541#54#diseaseC0678222 20212155-8#33#36#gene56925 20212155-8#41#54#diseaseC0678222 associated_with mum,breast cancer

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1047-1053 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T2 1232-1238 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T3 1176-1181 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T4 1176-1189 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
PD-UBERON-AE-B_T5 1182-1189 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
PD-UBERON-AE-B_T6 1290-1297 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels

DisGeNet-2017-sample

Id Subject Object Predicate Lexical cue
T85 1224-1227 gene:56925 denotes mum
T86 1232-1245 disease:C0006142 denotes breast cancer
R1 T85 T86 associated_with mum,breast cancer
R2 T85 T86 associated_with mum,breast cancer

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1047-1053 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T2 1232-1238 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T3 1176-1181 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T4 1176-1189 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
PD-UBERON-AE-B_T5 1182-1189 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
PD-UBERON-AE-B_T6 1290-1297 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels