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PubMed:2017258 JSONTXT

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DisGeNET

Id Subject Object Predicate Lexical cue
T0 1246-1250 gene:57410 denotes p105
T1 1219-1222 disease:C0019693 denotes HIV
T2 1246-1250 gene:4739 denotes p105
T3 1219-1222 disease:C0019693 denotes HIV
T4 1246-1250 gene:4790 denotes p105
T5 1219-1222 disease:C0019693 denotes HIV
T6 1246-1250 gene:4791 denotes p105
T7 1219-1222 disease:C0019693 denotes HIV
T8 1246-1250 gene:1012 denotes p105
T9 1219-1222 disease:C0019693 denotes HIV
R1 T0 T1 associated_with p105,HIV
R2 T2 T3 associated_with p105,HIV
R3 T4 T5 associated_with p105,HIV
R4 T6 T7 associated_with p105,HIV
R5 T8 T9 associated_with p105,HIV

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 115-131 HP_0002721 denotes immunodeficiency

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 31-41 protein denotes NF-kappa B
T2 49-63 protein denotes HIV-1 protease
T3 109-159 DNA denotes human immunodeficiency virus type-1 (HIV-1) genome
T4 184-200 protein denotes cellular factors
T5 236-261 cell_type denotes latently infected T cells
T6 330-340 protein denotes NF-kappa B
T7 382-408 DNA denotes HIV-1 long terminal repeat
T8 438-458 protein denotes DNA-binding subunits
T9 519-531 protein denotes 65K subunits
T10 565-579 cell_type denotes mature B cells
T11 622-650 protein denotes inactive cytoplasmic complex
T12 700-707 cell_type denotes T cells
T13 751-761 protein denotes NF-kappa B
T14 782-799 DNA denotes complementary DNA
T15 808-819 protein denotes 50K subunit
T16 854-880 protein denotes cytoplasmic 105K precursor
T17 882-886 protein denotes p105
T18 958-968 protein denotes NF-kappa B
T19 1034-1038 protein denotes p105
T20 1070-1080 protein denotes NF-kappa B
T21 1175-1195 protein denotes human 105K precursor
T22 1246-1250 protein denotes p105
T23 1282-1308 protein denotes nuclear NF-kappa B complex

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-87 Sentence denotes Processing of the precursor of NF-kappa B by the HIV-1 protease during acute infection.
S2 88-262 Sentence denotes Transcription of the human immunodeficiency virus type-1 (HIV-1) genome is regulated in part by cellular factors and is stimulated by activation of latently infected T cells.
S3 263-409 Sentence denotes T-cell activation also correlates with the induction of the factor NF-kappa B which binds to two adjacent sites in the HIV-1 long terminal repeat.
S4 410-532 Sentence denotes This factor consists of two DNA-binding subunits of relative molecular mass 50,000 (50K) associated with two 65K subunits.
S5 533-651 Sentence denotes It is located in the nucleus in mature B cells, but is present in other cell types as an inactive cytoplasmic complex.
S6 652-762 Sentence denotes External stimuli, including those that activate T cells, result in nuclear translocation of active NF-kappa B.
S7 763-932 Sentence denotes The cloning of the complementary DNA for the 50K subunit helped to identify an exclusively cytoplasmic 105K precursor (p105) (V.B., P.K. and A.I., manuscript submitted).
S8 933-1039 Sentence denotes The expression of active NF-kappa B might therefore also be regulated by the extent of processing of p105.
S9 1040-1196 Sentence denotes Because HIV-1 requires active NF-kappa B for efficient transcription, we tested the effect of HIV-1 infection on the processing of the human 105K precursor.
S10 1197-1309 Sentence denotes We show here that the HIV-1 protease can process p105 and increases levels of active nuclear NF-kappa B complex.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 31-41 NP denotes NF-kappa B
C3 49-54 NP denotes HIV-1
C2 45-63 NP denotes the HIV-1 protease
C4 109-152 NP denotes human immunodeficiency virus type-1 (HIV-1)
C5 319-340 NP denotes the factor NF-kappa B
C6 341-346 NP denotes which
C7 382-387 NP denotes HIV-1
C8 410-421 NP denotes This factor
C9 434-498 NP denotes two DNA-binding subunits of relative molecular mass 50,000 (50K)
C10 533-535 NP denotes It
C11 744-761 NP denotes active NF-kappa B
C12 804-819 NP denotes the 50K subunit
C13 839-887 NP denotes an exclusively cytoplasmic 105K precursor (p105)
C14 951-968 NP denotes active NF-kappa B
C15 1034-1038 NP denotes p105
C16 1048-1053 NP denotes HIV-1
C17 1063-1080 NP denotes active NF-kappa B
C18 1134-1139 NP denotes HIV-1
C19 1181-1195 NP denotes 105K precursor
C20 1215-1233 NP denotes the HIV-1 protease
C21 1246-1250 NP denotes p105
C22 1290-1300 NP denotes NF-kappa B
R1 C4 C3 coref-ident human immunodeficiency virus type-1 (HIV-1),HIV-1
R2 C6 C5 coref-relat which,the factor NF-kappa B
R3 C7 C3 coref-ident HIV-1,HIV-1
R4 C8 C5 coref-ident This factor,the factor NF-kappa B
R5 C10 C8 coref-pron It,This factor
R6 C12 C9 coref-other the 50K subunit,"two DNA-binding subunits of relative molecular mass 50,000 (50K)"
R7 C14 C11 coref-ident active NF-kappa B,active NF-kappa B
R8 C15 C13 coref-ident p105,an exclusively cytoplasmic 105K precursor (p105)
R9 C16 C7 coref-ident HIV-1,HIV-1
R10 C17 C14 coref-ident active NF-kappa B,active NF-kappa B
R11 C18 C16 coref-ident HIV-1,HIV-1
R12 C19 C15 coref-ident 105K precursor,p105
R13 C20 C2 coref-ident the HIV-1 protease,the HIV-1 protease
R14 C21 C19 coref-ident p105,105K precursor
R15 C22 C1 coref-ident NF-kappa B,NF-kappa B

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 31-41 protein_molecule denotes NF-kappa B
T2 49-54 virus denotes HIV-1
T3 71-86 other_name denotes acute infection
T4 109-146 DNA_family_or_group denotes human immunodeficiency virus type-1 (
T5 146-151 virus denotes HIV-1
T6 184-200 protein_family_or_group denotes cellular factors
T7 236-253 cell_type denotes latently infected
T8 254-261 cell_type denotes T cells
T9 263-280 other_name denotes T-cell activation
T10 330-340 protein_molecule denotes NF-kappa B
T11 382-408 DNA_domain_or_region denotes HIV-1 long terminal repeat
T12 438-458 protein_subunit denotes DNA-binding subunits
T13 519-531 protein_subunit denotes 65K subunits
T14 565-579 cell_type denotes mature B cells
T15 622-650 protein_complex denotes inactive cytoplasmic complex
T16 700-707 cell_type denotes T cells
T17 719-740 other_name denotes nuclear translocation
T18 751-761 protein_molecule denotes NF-kappa B
T19 782-799 DNA_family_or_group denotes complementary DNA
T20 808-819 protein_subunit denotes 50K subunit
T21 854-880 protein_molecule denotes cytoplasmic 105K precursor
T22 882-886 protein_molecule denotes p105
T23 958-968 protein_molecule denotes NF-kappa B
T24 1034-1038 protein_molecule denotes p105
T25 1048-1053 virus denotes HIV-1
T26 1070-1080 protein_molecule denotes NF-kappa B
T27 1134-1139 virus denotes HIV-1
T28 1175-1195 protein_molecule denotes human 105K precursor
T29 1219-1224 virus denotes HIV-1
T30 1246-1250 protein_molecule denotes p105
T31 1282-1308 protein_complex denotes nuclear NF-kappa B complex