PubMed:20150424
Annnotations
pqqtest_sentence
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
M_0 | 0-21 | cand:funRiceGene:323-lesion mimic | denotes | Sekiguchi lesion gene |
M_1 | 0-21 | cand:PO:0000061-lateral root-cap epidermal initial cell | denotes | Sekiguchi lesion gene |
M_2 | 0-21 | cand:PO:0025510-archegonium initial cell | denotes | Sekiguchi lesion gene |
M_3 | 0-21 | cand:PO:0001005-archesporial cells visible stage | denotes | Sekiguchi lesion gene |
M_4 | 0-21 | cand:PO:0030067-protonema side branch initial cell | denotes | Sekiguchi lesion gene |
M_5 | 0-21 | cand:WTO:0000446-Urocystis agropyri | denotes | Sekiguchi lesion gene |
M_6 | 0-21 | cand:PO:0000146-abscission zone | denotes | Sekiguchi lesion gene |
M_7 | 0-21 | cand:funRiceGene:295-stigma length | denotes | Sekiguchi lesion gene |
M_8 | 0-21 | cand:PO:0006501-leaf abscission zone | denotes | Sekiguchi lesion gene |
M_9 | 0-21 | cand:PO:0006503-fruit abscission zone | denotes | Sekiguchi lesion gene |
M_10 | 0-21 | cand:funRiceGene:397-defence response | denotes | Sekiguchi lesion gene |
M_11 | 602-642 | cand:TO:0002674-tryptophan content | denotes | tryptamine 5-hydroxylase enzyme activity |
M_12 | 602-642 | cand:funRiceGene:208-tryptophan aminotransferase | denotes | tryptamine 5-hydroxylase enzyme activity |
M_13 | 602-642 | cand:TO:0000312-NADH glutamate synthase content | denotes | tryptamine 5-hydroxylase enzyme activity |
M_14 | 602-642 | cand:TO:0000599-enzyme activity trait | denotes | tryptamine 5-hydroxylase enzyme activity |
M_15 | 602-642 | cand:PECO:0007070-indole acetic acid exposure | denotes | tryptamine 5-hydroxylase enzyme activity |
M_16 | 602-642 | cand:TO:0000284-ADP glucose pyrophosphorylase activity trait | denotes | tryptamine 5-hydroxylase enzyme activity |
M_17 | 602-642 | cand:TO:0002677-brassinosteroid sensitivity | denotes | tryptamine 5-hydroxylase enzyme activity |
M_18 | 602-642 | cand:TO:0000647-relative acid phosphatase activity | denotes | tryptamine 5-hydroxylase enzyme activity |
M_19 | 602-642 | cand:TO:0000248-primary macronutrient sensitivity | denotes | tryptamine 5-hydroxylase enzyme activity |
M_20 | 602-642 | cand:funRiceGene:500-antimicrobial activity | denotes | tryptamine 5-hydroxylase enzyme activity |
M_21 | 602-642 | cand:TO:0000003-alkali soil sensitivity | denotes | tryptamine 5-hydroxylase enzyme activity |
M_22 | 461-468 | cand:funRiceGene:336-homeobox gene | denotes | SL gene |
M_23 | 461-468 | cand:funRiceGene:333-transcription suppressor | denotes | SL gene |
M_24 | 461-468 | cand:funRiceGene:32-transcription regulator | denotes | SL gene |
M_25 | 461-468 | cand:PECO:0007307-transposable element insert exposure | denotes | SL gene |
M_26 | 461-468 | cand:funRiceGene:216-transcriptional regulator | denotes | SL gene |
M_27 | 461-468 | cand:TO:0002687-cell elongation trait | denotes | SL gene |
M_28 | 461-468 | cand:PO:0020012-sexine | denotes | SL gene |
M_29 | 461-468 | cand:PO:0020105-ligule | denotes | SL gene |
M_30 | 461-468 | cand:funRiceGene:347-stamen | denotes | SL gene |
M_31 | 461-468 | cand:funRiceGene:55-flavone | denotes | SL gene |
M_32 | 461-468 | cand:PO:0025197-stele | denotes | SL gene |
M_33 | 32-61 | GeneID:NA | denotes | cytochrome P450 monooxygenase |
M_34 | 602-626 | GeneID:RAPID:Os12g0268000MSUID:LOC_Os12g16720GraID:GR:0060895 | denotes | tryptamine 5-hydroxylase |
M_35 | 516-523 | GeneID:RAPID:Os12g0268000MSUID:LOC_Os12g16720GraID:GR:0060895 | denotes | CYP71P1 |
T70764 | 1009-1028 | xzyao:29221 | denotes | suspension cultures |
T57420 | 602-642 | xzyao:21407 | denotes | tryptamine 5-hydroxylase enzyme activity |
T35831 | 1043-1053 | funRiceGene:228 | denotes | resistance |
T84305 | 865-883 | xzyao:33703 | denotes | Magnaporthe grisea |
T69700 | 472-489 | funRiceGene:79, xzyao:10375 | denotes | map-based cloning |
T84732 | 1323-1331 | funRiceGene:153 | denotes | immunity |
T36425 | 0-16 | xzyao:44070 | denotes | Sekiguchi lesion |
T30175 | 342-358 | xzyao:44070 | denotes | sekiguchi lesion |
T98506 | 962-974 | xzyao:4768 | denotes | defense gene |
T813 | 1126-1138 | xzyao:4768 | denotes | defense gene |
T39220 | 1236-1245 | xzyao:13565 | denotes | G protein |
T51858 | 627-642 | xzyao:15695 | denotes | enzyme activity |
T24878 | 909-914 | funRiceGene:223 | denotes | blast |
T16216 | 1062-1067 | funRiceGene:223 | denotes | blast |
T60444 | 962-985 | xzyao:35824 | denotes | defense gene expression |
T54910 | 1126-1149 | xzyao:35824 | denotes | defense gene expression |
T98516 | 1033-1053 | xzyao:13714 | denotes | increased resistance |
T74640 | 915-922 | WTO:0000130, funRiceGene:18 | denotes | disease |
T46141 | 904-922 | xzyao:3154 | denotes | rice blast disease |
T2601 | 962-969 | funRiceGene:307 | denotes | defense |
T15050 | 1126-1133 | funRiceGene:307 | denotes | defense |
T72970 | 1311-1331 | xzyao:37446 | denotes | rice innate immunity |
T74529 | 909-922 | funRiceGene:148, xzyao:17825 | denotes | blast disease |
T58814 | 1316-1331 | funRiceGene:41, xzyao:32952 | denotes | innate immunity |
T2004 | 990-1000 | funRiceGene:394, xzyao:352 | denotes | cell death |
T77848 | 1062-1077 | xzyao:42868 | denotes | blast infection |
T56888 | 10-16 | funRiceGene:171 | denotes | lesion |
T80021 | 352-358 | funRiceGene:171 | denotes | lesion |
T28984 | 904-914 | xzyao:29995 | denotes | rice blast |
T82939 | 1057-1067 | xzyao:29995 | denotes | rice blast |
T45113 | 270-290 | xzyao:36787 | denotes | biosynthesis pathway |
T91697 | 105-114 | hunflair:NA:Chemical | denotes | serotonin |
T21211 | 260-269 | hunflair:NA:Chemical | denotes | serotonin |
T68520 | 421-430 | hunflair:NA:Chemical | denotes | serotonin |
T4864 | 689-698 | hunflair:NA:Chemical | denotes | serotonin |
T13551 | 944-953 | hunflair:NA:Chemical | denotes | serotonin |
M_36 | 1108-1117 | hunflair:NA:Chemical | denotes | serotonin |
M_37 | 1274-1283 | hunflair:NA:Chemical | denotes | serotonin |
M_38 | 796-824 | hunflair:NA:Chemical | denotes | N-acetylchitooligosaccharide |
M_39 | 529-565 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase family |
M_40 | 865-883 | hunflair:NA:Species | denotes | Magnaporthe grisea |
M_41 | 1169-1178 | hunflair:NA:Gene | denotes | RacGTPase |
M_42 | 124-133 | hunflair:NA:Chemical | denotes | Serotonin |
M_43 | 1062-1077 | hunflair:NA:Disease | denotes | blast infection |
M_44 | 1221-1245 | hunflair:NA:Gene | denotes | heterotrimeric G protein |
M_45 | 91-101 | hunflair:NA:Chemical | denotes | tryptamine |
M_46 | 383-393 | hunflair:NA:Chemical | denotes | tryptamine |
M_47 | 602-612 | hunflair:NA:Chemical | denotes | tryptamine |
M_48 | 675-685 | hunflair:NA:Chemical | denotes | tryptamine |
M_49 | 904-922 | hunflair:NA:Disease | denotes | rice blast disease |
M_50 | 516-523 | hunflair:NA:Gene | denotes | CYP71P1 |
M_51 | 602-626 | hunflair:NA:Gene | denotes | tryptamine 5-hydroxylase |
M_52 | 170-177 | hunflair:NA:Species | denotes | mammals |
M_53 | 751-758 | hunflair:NA:Species | denotes | mammals |
M_54 | 461-463 | hunflair:NA:Gene | denotes | SL |
M_55 | 581-583 | hunflair:NA:Gene | denotes | SL |
M_56 | 774-776 | hunflair:NA:Gene | denotes | SL |
M_57 | 1004-1028 | hunflair:NA:CellLine | denotes | rice suspension cultures |
M_58 | 118-122 | hunflair:NA:Species | denotes | rice |
M_59 | 337-341 | hunflair:NA:Species | denotes | rice |
M_60 | 904-908 | hunflair:NA:Species | denotes | rice |
M_61 | 1004-1008 | hunflair:NA:Species | denotes | rice |
M_62 | 1057-1061 | hunflair:NA:Species | denotes | rice |
M_63 | 1311-1315 | hunflair:NA:Species | denotes | rice |
M_64 | 1198-1213 | hunflair:NA:Gene | denotes | G alpha subunit |
M_65 | 237-243 | hunflair:NA:Species | denotes | humans |
M_66 | 32-61 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase |
M_67 | 529-558 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase |
M_68 | 796-797 | pubtator:MESH:D009584:Chemical | denotes | N |
M_69 | 124-133 | pubtator:MESH:D012701:Chemical | denotes | Serotonin |
M_70 | 91-101 | pubtator:MESH:C030820:Chemical | denotes | tryptamine |
M_71 | 383-393 | pubtator:MESH:C030820:Chemical | denotes | tryptamine |
M_72 | 602-612 | pubtator:MESH:C030820:Chemical | denotes | tryptamine |
M_73 | 675-685 | pubtator:MESH:C030820:Chemical | denotes | tryptamine |
M_74 | 850-859 | pubtator:MESH:D007239:Disease | denotes | infection |
M_75 | 1068-1077 | pubtator:MESH:D007239:Disease | denotes | infection |
M_76 | 237-243 | pubtator:9606:Species | denotes | humans |
M_77 | 1062-1077 | pubtator:MESH:D001753:Disease | denotes | blast infection |
M_78 | 0-16 | pubtator:MESH:D051437:Disease | denotes | Sekiguchi lesion |
M_79 | 118-122 | pubtator:4530:Species | denotes | rice |
M_80 | 337-341 | pubtator:4530:Species | denotes | rice |
M_81 | 904-908 | pubtator:4530:Species | denotes | rice |
M_82 | 1004-1008 | pubtator:4530:Species | denotes | rice |
M_83 | 1057-1061 | pubtator:4530:Species | denotes | rice |
M_84 | 1311-1315 | pubtator:4530:Species | denotes | rice |
M_85 | 865-883 | pubtator:148305:Species | denotes | Magnaporthe grisea |
M_86 | 105-114 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_87 | 260-269 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_88 | 421-430 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_89 | 689-698 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_90 | 944-953 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_91 | 1108-1117 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_92 | 1274-1283 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
21k_plant_trait_mention
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
M_0 | 1057-1077 | xzyao:5555 | denotes | rice blast infection |
M_1 | 472-489 | funRiceGene:79, xzyao:16212 | denotes | map-based cloning |
M_2 | 990-1000 | funRiceGene:394, xzyao:6499 | denotes | cell death |
M_3 | 1043-1053 | funRiceGene:228 | denotes | resistance |
M_4 | 962-969 | funRiceGene:307 | denotes | defense |
M_5 | 1126-1133 | funRiceGene:307 | denotes | defense |
M_6 | 909-914 | funRiceGene:223 | denotes | blast |
M_7 | 1062-1067 | funRiceGene:223 | denotes | blast |
M_8 | 352-358 | funRiceGene:171 | denotes | lesion |
M_9 | 904-922 | hunflair:NA:Disease | denotes | rice blast disease |
M_10 | 1169-1178 | hunflair:NA:Gene | denotes | RacGTPase |
M_11 | 91-101 | hunflair:NA:Chemical | denotes | tryptamine |
M_12 | 383-393 | hunflair:NA:Chemical | denotes | tryptamine |
M_13 | 602-612 | hunflair:NA:Chemical | denotes | tryptamine |
M_14 | 675-685 | hunflair:NA:Chemical | denotes | tryptamine |
M_15 | 124-133 | hunflair:NA:Chemical | denotes | Serotonin |
M_16 | 602-626 | hunflair:NA:Gene | denotes | tryptamine 5-hydroxylase |
M_17 | 796-824 | hunflair:NA:Chemical | denotes | N-acetylchitooligosaccharide |
M_18 | 105-114 | hunflair:NA:Chemical | denotes | serotonin |
M_19 | 260-269 | hunflair:NA:Chemical | denotes | serotonin |
M_20 | 421-430 | hunflair:NA:Chemical | denotes | serotonin |
M_21 | 689-698 | hunflair:NA:Chemical | denotes | serotonin |
M_22 | 944-953 | hunflair:NA:Chemical | denotes | serotonin |
M_23 | 1108-1117 | hunflair:NA:Chemical | denotes | serotonin |
M_24 | 1274-1283 | hunflair:NA:Chemical | denotes | serotonin |
M_25 | 1198-1213 | hunflair:NA:Gene | denotes | G alpha subunit |
M_26 | 865-883 | hunflair:NA:Species | denotes | Magnaporthe grisea |
M_27 | 1004-1028 | hunflair:NA:CellLine | denotes | rice suspension cultures |
M_28 | 237-243 | hunflair:NA:Species | denotes | humans |
M_29 | 32-61 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase |
M_30 | 529-558 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase |
M_31 | 1221-1245 | hunflair:NA:Gene | denotes | heterotrimeric G protein |
M_32 | 461-463 | hunflair:NA:Gene | denotes | SL |
M_33 | 581-583 | hunflair:NA:Gene | denotes | SL |
M_34 | 774-776 | hunflair:NA:Gene | denotes | SL |
M_35 | 529-565 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase family |
M_36 | 1062-1077 | hunflair:NA:Disease | denotes | blast infection |
M_37 | 170-177 | hunflair:NA:Species | denotes | mammals |
M_38 | 751-758 | hunflair:NA:Species | denotes | mammals |
M_39 | 118-122 | hunflair:NA:Species | denotes | rice |
M_40 | 337-341 | hunflair:NA:Species | denotes | rice |
M_41 | 904-908 | hunflair:NA:Species | denotes | rice |
M_42 | 1004-1008 | hunflair:NA:Species | denotes | rice |
M_43 | 1057-1061 | hunflair:NA:Species | denotes | rice |
M_44 | 1311-1315 | hunflair:NA:Species | denotes | rice |
M_45 | 516-523 | hunflair:NA:Gene | denotes | CYP71P1 |
M_46 | 91-101 | pubtator:MESH:C030820:Chemical | denotes | tryptamine |
M_47 | 383-393 | pubtator:MESH:C030820:Chemical | denotes | tryptamine |
M_48 | 602-612 | pubtator:MESH:C030820:Chemical | denotes | tryptamine |
M_49 | 675-685 | pubtator:MESH:C030820:Chemical | denotes | tryptamine |
M_50 | 850-859 | pubtator:MESH:D007239:Disease | denotes | infection |
M_51 | 1068-1077 | pubtator:MESH:D007239:Disease | denotes | infection |
M_52 | 1062-1077 | pubtator:MESH:D001753:Disease | denotes | blast infection |
M_53 | 865-883 | pubtator:148305:Species | denotes | Magnaporthe grisea |
M_54 | 124-133 | pubtator:MESH:D012701:Chemical | denotes | Serotonin |
M_55 | 237-243 | pubtator:9606:Species | denotes | humans |
M_56 | 796-797 | pubtator:MESH:D009584:Chemical | denotes | N |
M_57 | 0-16 | pubtator:MESH:D051437:Disease | denotes | Sekiguchi lesion |
M_58 | 105-114 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_59 | 260-269 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_60 | 421-430 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_61 | 689-698 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_62 | 944-953 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_63 | 1108-1117 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_64 | 1274-1283 | pubtator:MESH:D012701:Chemical | denotes | serotonin |
M_65 | 118-122 | pubtator:4530:Species | denotes | rice |
M_66 | 337-341 | pubtator:4530:Species | denotes | rice |
M_67 | 904-908 | pubtator:4530:Species | denotes | rice |
M_68 | 1004-1008 | pubtator:4530:Species | denotes | rice |
M_69 | 1057-1061 | pubtator:4530:Species | denotes | rice |
M_70 | 1311-1315 | pubtator:4530:Species | denotes | rice |
OryzaGP_2021_v2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 360-362 | http://identifiers.org/oryzabase.gene/960 | denotes | sl |
T2 | 360-362 | http://identifiers.org/oryzabase.gene/2096 | denotes | sl |
T3 | 461-463 | http://identifiers.org/oryzabase.gene/2096 | denotes | SL |
T4 | 516-523 | http://identifiers.org/oryzabase.gene/2096 | denotes | CYP71P1 |
T5 | 581-583 | http://identifiers.org/oryzabase.gene/2096 | denotes | SL |
T6 | 774-776 | http://identifiers.org/oryzabase.gene/2096 | denotes | SL |
T78470 | 360-362 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | sl |
T43368 | 461-463 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | SL |
T22148 | 516-523 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | CYP71P1 |
T69768 | 581-583 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | SL |
T85651 | 774-776 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | SL |
OryzaGP_2022
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-16 | http://identifiers.org/oryzabase.gene/2096 | denotes | Sekiguchi lesion |
T2 | 32-47 | http://identifiers.org/oryzabase.gene/22576 | denotes | cytochrome P450 |
T3 | 32-47 | http://identifiers.org/oryzabase.gene/18249 | denotes | cytochrome P450 |
T4 | 32-47 | http://identifiers.org/oryzabase.gene/16778 | denotes | cytochrome P450 |
T5 | 342-358 | http://identifiers.org/oryzabase.gene/2096 | denotes | sekiguchi lesion |
T6 | 529-544 | http://identifiers.org/oryzabase.gene/22576 | denotes | cytochrome P450 |
T7 | 529-544 | http://identifiers.org/oryzabase.gene/18249 | denotes | cytochrome P450 |
T8 | 529-544 | http://identifiers.org/oryzabase.gene/16778 | denotes | cytochrome P450 |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-123 | Sentence | denotes | Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice. |
T2 | 124-244 | Sentence | denotes | Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans. |
T3 | 245-332 | Sentence | denotes | In plants, the serotonin biosynthesis pathway and its function are not well understood. |
T4 | 333-444 | Sentence | denotes | The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis. |
T5 | 445-566 | Sentence | denotes | We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family. |
T6 | 567-699 | Sentence | denotes | A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin. |
T7 | 700-759 | Sentence | denotes | This pathway is novel and has not been reported in mammals. |
T8 | 760-923 | Sentence | denotes | Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease. |
T9 | 924-1088 | Sentence | denotes | Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants. |
T10 | 1089-1246 | Sentence | denotes | We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein. |
T11 | 1247-1332 | Sentence | denotes | These results suggest that serotonin plays an important role in rice innate immunity. |
OryzaGP_2021_FLAIR
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
M_0 | 1198-1213 | hunflair:NA:Gene | denotes | G alpha subunit |
M_1 | 1004-1028 | hunflair:NA:CellLine | denotes | rice suspension cultures |
M_2 | 1221-1245 | hunflair:NA:Gene | denotes | heterotrimeric G protein |
M_3 | 516-523 | hunflair:NA:Gene | denotes | CYP71P1 |
M_4 | 529-565 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase family |
M_5 | 865-883 | hunflair:NA:Species | denotes | Magnaporthe grisea |
M_6 | 796-824 | hunflair:NA:Chemical | denotes | N-acetylchitooligosaccharide |
M_7 | 91-101 | hunflair:NA:Chemical | denotes | tryptamine |
M_8 | 383-393 | hunflair:NA:Chemical | denotes | tryptamine |
M_9 | 602-612 | hunflair:NA:Chemical | denotes | tryptamine |
M_10 | 675-685 | hunflair:NA:Chemical | denotes | tryptamine |
M_11 | 904-922 | hunflair:NA:Disease | denotes | rice blast disease |
M_12 | 118-122 | hunflair:NA:Species | denotes | rice |
M_13 | 337-341 | hunflair:NA:Species | denotes | rice |
M_14 | 904-908 | hunflair:NA:Species | denotes | rice |
M_15 | 1004-1008 | hunflair:NA:Species | denotes | rice |
M_16 | 1057-1061 | hunflair:NA:Species | denotes | rice |
M_17 | 1311-1315 | hunflair:NA:Species | denotes | rice |
M_18 | 32-61 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase |
M_19 | 529-558 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase |
M_20 | 124-133 | hunflair:NA:Chemical | denotes | Serotonin |
M_21 | 170-177 | hunflair:NA:Species | denotes | mammals |
M_22 | 751-758 | hunflair:NA:Species | denotes | mammals |
M_23 | 237-243 | hunflair:NA:Species | denotes | humans |
M_24 | 602-626 | hunflair:NA:Gene | denotes | tryptamine 5-hydroxylase |
M_25 | 1062-1077 | hunflair:NA:Disease | denotes | blast infection |
M_26 | 1169-1178 | hunflair:NA:Gene | denotes | RacGTPase |
M_27 | 461-463 | hunflair:NA:Gene | denotes | SL |
M_28 | 581-583 | hunflair:NA:Gene | denotes | SL |
M_29 | 774-776 | hunflair:NA:Gene | denotes | SL |
M_30 | 105-114 | hunflair:NA:Chemical | denotes | serotonin |
M_31 | 260-269 | hunflair:NA:Chemical | denotes | serotonin |
M_32 | 421-430 | hunflair:NA:Chemical | denotes | serotonin |
M_33 | 689-698 | hunflair:NA:Chemical | denotes | serotonin |
M_34 | 944-953 | hunflair:NA:Chemical | denotes | serotonin |
M_35 | 1108-1117 | hunflair:NA:Chemical | denotes | serotonin |
M_36 | 1274-1283 | hunflair:NA:Chemical | denotes | serotonin |
OryzaGP_2021
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-16 | http://identifiers.org/oryzabase.gene/2096 | denotes | Sekiguchi lesion |
T2 | 32-47 | http://identifiers.org/oryzabase.gene/22648 | denotes | cytochrome P450 |
T3 | 32-47 | http://identifiers.org/oryzabase.gene/22576 | denotes | cytochrome P450 |
T4 | 32-47 | http://identifiers.org/oryzabase.gene/16778 | denotes | cytochrome P450 |
T5 | 342-358 | http://identifiers.org/oryzabase.gene/2096 | denotes | sekiguchi lesion |
T6 | 360-362 | http://identifiers.org/oryzabase.gene/960 | denotes | sl |
T7 | 360-362 | http://identifiers.org/oryzabase.gene/2096 | denotes | sl |
T8 | 461-463 | http://identifiers.org/oryzabase.gene/2096 | denotes | SL |
T9 | 472-475 | http://identifiers.org/oryzabase.gene/12401 | denotes | map |
T10 | 516-523 | http://identifiers.org/oryzabase.gene/2096 | denotes | CYP71P1 |
T11 | 529-544 | http://identifiers.org/oryzabase.gene/22648 | denotes | cytochrome P450 |
T12 | 529-544 | http://identifiers.org/oryzabase.gene/22576 | denotes | cytochrome P450 |
T13 | 529-544 | http://identifiers.org/oryzabase.gene/16778 | denotes | cytochrome P450 |
T14 | 581-583 | http://identifiers.org/oryzabase.gene/2096 | denotes | SL |
T15 | 602-626 | http://identifiers.org/oryzabase.gene/2096 | denotes | tryptamine 5-hydroxylase |
T16 | 774-776 | http://identifiers.org/oryzabase.gene/2096 | denotes | SL |
T69473 | 0-16 | http://identifiers.org/ricegap/LOC_Os12g16720 | denotes | Sekiguchi lesion |
T91135 | 32-47 | http://identifiers.org/ricegap/LOC_Os10g36980 | denotes | cytochrome P450 |
T81543 | 32-47 | http://identifiers.org/ricegap/LOC_Os08g43440 | denotes | cytochrome P450 |
T53217 | 32-47 | http://identifiers.org/ricegap/LOC_Os02g26770 | denotes | cytochrome P450 |
T64683 | 342-358 | http://identifiers.org/ricegap/LOC_Os12g16720 | denotes | sekiguchi lesion |
T30889 | 360-362 | http://identifiers.org/ricegap/LOC_Os12g16720 | denotes | sl |
T49205 | 461-463 | http://identifiers.org/ricegap/LOC_Os12g16720 | denotes | SL |
T1256 | 472-475 | http://identifiers.org/ricegap/LOC_Os08g40620 | denotes | map |
T20761 | 516-523 | http://identifiers.org/ricegap/LOC_Os12g16720 | denotes | CYP71P1 |
T43364 | 529-544 | http://identifiers.org/ricegap/LOC_Os10g36980 | denotes | cytochrome P450 |
T21784 | 529-544 | http://identifiers.org/ricegap/LOC_Os08g43440 | denotes | cytochrome P450 |
T50629 | 529-544 | http://identifiers.org/ricegap/LOC_Os02g26770 | denotes | cytochrome P450 |
T49717 | 581-583 | http://identifiers.org/ricegap/LOC_Os12g16720 | denotes | SL |
T86977 | 602-626 | http://identifiers.org/ricegap/LOC_Os12g16720 | denotes | tryptamine 5-hydroxylase |
T93549 | 774-776 | http://identifiers.org/ricegap/LOC_Os12g16720 | denotes | SL |
T23188 | 0-16 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | Sekiguchi lesion |
T27714 | 32-47 | http://identifiers.org/rapdb.locus/Os10g0513900 | denotes | cytochrome P450 |
T907 | 32-47 | http://identifiers.org/rapdb.locus/Os08g0547900 | denotes | cytochrome P450 |
T82223 | 32-47 | http://identifiers.org/rapdb.locus/Os02g0467000 | denotes | cytochrome P450 |
T62092 | 342-358 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | sekiguchi lesion |
T86994 | 360-362 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | sl |
T77532 | 461-463 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | SL |
T79546 | 472-475 | http://identifiers.org/rapdb.locus/Os08g0518100 | denotes | map |
T80401 | 516-523 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | CYP71P1 |
T74803 | 529-544 | http://identifiers.org/rapdb.locus/Os10g0513900 | denotes | cytochrome P450 |
T41610 | 529-544 | http://identifiers.org/rapdb.locus/Os08g0547900 | denotes | cytochrome P450 |
T47214 | 529-544 | http://identifiers.org/rapdb.locus/Os02g0467000 | denotes | cytochrome P450 |
T1075 | 581-583 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | SL |
T18170 | 602-626 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | tryptamine 5-hydroxylase |
T16818 | 774-776 | http://identifiers.org/rapdb.locus/Os12g0268000 | denotes | SL |
T27651 | 0-16 | http://identifiers.org/uniprot/Q2QUC5 | denotes | Sekiguchi lesion |
T1679 | 32-47 | http://identifiers.org/uniprot/B4FQ24 | denotes | cytochrome P450 |
T59259 | 32-47 | http://identifiers.org/refseq/NP_001151365.1 | denotes | cytochrome P450 |
T80799 | 32-47 | http://identifiers.org/refseq/NP_001147503.1 | denotes | cytochrome P450 |
T94767 | 342-358 | http://identifiers.org/uniprot/Q2QUC5 | denotes | sekiguchi lesion |
T44309 | 360-362 | http://identifiers.org/uniprot/Q2QUC5 | denotes | sl |
T30173 | 461-463 | http://identifiers.org/uniprot/Q2QUC5 | denotes | SL |
T47824 | 516-523 | http://identifiers.org/uniprot/Q2QUC5 | denotes | CYP71P1 |
T96584 | 529-544 | http://identifiers.org/uniprot/B4FQ24 | denotes | cytochrome P450 |
T87256 | 529-544 | http://identifiers.org/refseq/NP_001151365.1 | denotes | cytochrome P450 |
T44301 | 529-544 | http://identifiers.org/refseq/NP_001147503.1 | denotes | cytochrome P450 |
T52985 | 581-583 | http://identifiers.org/uniprot/Q2QUC5 | denotes | SL |
T25921 | 602-626 | http://identifiers.org/uniprot/Q2QUC5 | denotes | tryptamine 5-hydroxylase |
T38208 | 774-776 | http://identifiers.org/uniprot/Q2QUC5 | denotes | SL |
M_0 | 1198-1213 | hunflair:NA:Gene | denotes | G alpha subunit |
M_1 | 1004-1028 | hunflair:NA:CellLine | denotes | rice suspension cultures |
M_2 | 1221-1245 | hunflair:NA:Gene | denotes | heterotrimeric G protein |
M_3 | 516-523 | hunflair:NA:Gene | denotes | CYP71P1 |
M_4 | 529-565 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase family |
M_5 | 865-883 | hunflair:NA:Species | denotes | Magnaporthe grisea |
M_6 | 796-824 | hunflair:NA:Chemical | denotes | N-acetylchitooligosaccharide |
M_7 | 91-101 | hunflair:NA:Chemical | denotes | tryptamine |
M_8 | 383-393 | hunflair:NA:Chemical | denotes | tryptamine |
M_9 | 602-612 | hunflair:NA:Chemical | denotes | tryptamine |
M_10 | 675-685 | hunflair:NA:Chemical | denotes | tryptamine |
M_11 | 904-922 | hunflair:NA:Disease | denotes | rice blast disease |
M_12 | 118-122 | hunflair:NA:Species | denotes | rice |
M_13 | 337-341 | hunflair:NA:Species | denotes | rice |
M_14 | 904-908 | hunflair:NA:Species | denotes | rice |
M_15 | 1004-1008 | hunflair:NA:Species | denotes | rice |
M_16 | 1057-1061 | hunflair:NA:Species | denotes | rice |
M_17 | 1311-1315 | hunflair:NA:Species | denotes | rice |
M_18 | 32-61 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase |
M_19 | 529-558 | hunflair:NA:Gene | denotes | cytochrome P450 monooxygenase |
M_20 | 124-133 | hunflair:NA:Chemical | denotes | Serotonin |
M_21 | 170-177 | hunflair:NA:Species | denotes | mammals |
M_22 | 751-758 | hunflair:NA:Species | denotes | mammals |
M_23 | 237-243 | hunflair:NA:Species | denotes | humans |
M_24 | 602-626 | hunflair:NA:Gene | denotes | tryptamine 5-hydroxylase |
M_25 | 1062-1077 | hunflair:NA:Disease | denotes | blast infection |
M_26 | 1169-1178 | hunflair:NA:Gene | denotes | RacGTPase |
M_27 | 461-463 | hunflair:NA:Gene | denotes | SL |
M_28 | 581-583 | hunflair:NA:Gene | denotes | SL |
M_29 | 774-776 | hunflair:NA:Gene | denotes | SL |
M_30 | 105-114 | hunflair:NA:Chemical | denotes | serotonin |
M_31 | 260-269 | hunflair:NA:Chemical | denotes | serotonin |
M_32 | 421-430 | hunflair:NA:Chemical | denotes | serotonin |
M_33 | 689-698 | hunflair:NA:Chemical | denotes | serotonin |
M_34 | 944-953 | hunflair:NA:Chemical | denotes | serotonin |
M_35 | 1108-1117 | hunflair:NA:Chemical | denotes | serotonin |
M_36 | 1274-1283 | hunflair:NA:Chemical | denotes | serotonin |
Allie
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
SS1_20150424_3_0 | 342-358 | expanded | denotes | sekiguchi lesion |
SS2_20150424_3_0 | 360-362 | abbr | denotes | sl |
AE1_20150424_3_0 | SS1_20150424_3_0 | SS2_20150424_3_0 | abbreviatedTo | sekiguchi lesion,sl |
mondo_disease
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 850-859 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T2 | 1068-1077 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
Glycan-GlyCosmos
Id | Subject | Object | Predicate | Lexical cue | image |
---|---|---|---|---|---|
T1 | 826-832 | Glycan | denotes | chitin | https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY |
GlyCosmos15-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 850-859 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T2 | 1068-1077 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
GlyCosmos15-NCBITAXON
Id | Subject | Object | Predicate | Lexical cue | db_id |
---|---|---|---|---|---|
T1 | 118-122 | OrganismTaxon | denotes | rice | 4530 |
T2 | 337-341 | OrganismTaxon | denotes | rice | 4530 |
T3 | 865-883 | OrganismTaxon | denotes | Magnaporthe grisea | 148305 |
T4 | 904-908 | OrganismTaxon | denotes | rice | 4530 |
T5 | 1004-1008 | OrganismTaxon | denotes | rice | 4530 |
T6 | 1057-1061 | OrganismTaxon | denotes | rice | 4530 |
T7 | 1311-1315 | OrganismTaxon | denotes | rice | 4530 |
GlyCosmos15-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 877-883 | Body_part | denotes | grisea | http://purl.obolibrary.org/obo/UBERON_0002020 |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-123 | Sentence | denotes | Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice. |
T2 | 124-244 | Sentence | denotes | Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans. |
T3 | 245-332 | Sentence | denotes | In plants, the serotonin biosynthesis pathway and its function are not well understood. |
T4 | 333-444 | Sentence | denotes | The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis. |
T5 | 445-566 | Sentence | denotes | We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family. |
T6 | 567-699 | Sentence | denotes | A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin. |
T7 | 700-759 | Sentence | denotes | This pathway is novel and has not been reported in mammals. |
T8 | 760-923 | Sentence | denotes | Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease. |
T9 | 924-1088 | Sentence | denotes | Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants. |
T10 | 1089-1246 | Sentence | denotes | We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein. |
T11 | 1247-1332 | Sentence | denotes | These results suggest that serotonin plays an important role in rice innate immunity. |
GlyCosmos15-Sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-123 | Sentence | denotes | Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice. |
T2 | 124-244 | Sentence | denotes | Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans. |
T3 | 245-332 | Sentence | denotes | In plants, the serotonin biosynthesis pathway and its function are not well understood. |
T4 | 333-444 | Sentence | denotes | The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis. |
T5 | 445-566 | Sentence | denotes | We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family. |
T6 | 567-699 | Sentence | denotes | A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin. |
T7 | 700-759 | Sentence | denotes | This pathway is novel and has not been reported in mammals. |
T8 | 760-923 | Sentence | denotes | Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease. |
T9 | 924-1088 | Sentence | denotes | Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants. |
T10 | 1089-1246 | Sentence | denotes | We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein. |
T11 | 1247-1332 | Sentence | denotes | These results suggest that serotonin plays an important role in rice innate immunity. |
GlyCosmos15-Glycan
Id | Subject | Object | Predicate | Lexical cue | glycosmos_id | image |
---|---|---|---|---|---|---|
T1 | 826-832 | Glycan | denotes | chitin | https://glycosmos.org/glycans/show/G97099AY | https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY |
Oryza_sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-123 | Sentence | denotes | Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice. |
T2 | 124-244 | Sentence | denotes | Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans. |
T3 | 245-332 | Sentence | denotes | In plants, the serotonin biosynthesis pathway and its function are not well understood. |
T4 | 333-444 | Sentence | denotes | The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis. |
T5 | 445-566 | Sentence | denotes | We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family. |
T6 | 567-699 | Sentence | denotes | A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin. |
T7 | 700-759 | Sentence | denotes | This pathway is novel and has not been reported in mammals. |
T8 | 760-923 | Sentence | denotes | Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease. |
T9 | 924-1088 | Sentence | denotes | Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants. |
T10 | 1089-1246 | Sentence | denotes | We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein. |
T11 | 1247-1332 | Sentence | denotes | These results suggest that serotonin plays an important role in rice innate immunity. |
Oryza_sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-123 | Sentence | denotes | Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice. |
T2 | 124-244 | Sentence | denotes | Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans. |
T3 | 245-332 | Sentence | denotes | In plants, the serotonin biosynthesis pathway and its function are not well understood. |
T4 | 333-444 | Sentence | denotes | The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis. |
T5 | 445-566 | Sentence | denotes | We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family. |
T6 | 567-699 | Sentence | denotes | A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin. |
T7 | 700-759 | Sentence | denotes | This pathway is novel and has not been reported in mammals. |
T8 | 760-923 | Sentence | denotes | Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease. |
T9 | 924-1088 | Sentence | denotes | Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants. |
T10 | 1089-1246 | Sentence | denotes | We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein. |
T11 | 1247-1332 | Sentence | denotes | These results suggest that serotonin plays an important role in rice innate immunity. |
Oryza_sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-123 | Sentence | denotes | Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice. |
T2 | 124-244 | Sentence | denotes | Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans. |
T3 | 245-332 | Sentence | denotes | In plants, the serotonin biosynthesis pathway and its function are not well understood. |
T4 | 333-444 | Sentence | denotes | The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis. |
T5 | 445-566 | Sentence | denotes | We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family. |
T6 | 567-699 | Sentence | denotes | A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin. |
T7 | 700-759 | Sentence | denotes | This pathway is novel and has not been reported in mammals. |
T8 | 760-923 | Sentence | denotes | Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease. |
T9 | 924-1088 | Sentence | denotes | Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants. |
T10 | 1089-1246 | Sentence | denotes | We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein. |
T11 | 1247-1332 | Sentence | denotes | These results suggest that serotonin plays an important role in rice innate immunity. |
NCBITAXON
Id | Subject | Object | Predicate | Lexical cue | db_id |
---|---|---|---|---|---|
T1 | 118-122 | OrganismTaxon | denotes | rice | 4530 |
T2 | 337-341 | OrganismTaxon | denotes | rice | 4530 |
T3 | 865-883 | OrganismTaxon | denotes | Magnaporthe grisea | 148305 |
T4 | 904-908 | OrganismTaxon | denotes | rice | 4530 |
T5 | 1004-1008 | OrganismTaxon | denotes | rice | 4530 |
T6 | 1057-1061 | OrganismTaxon | denotes | rice | 4530 |
T7 | 1311-1315 | OrganismTaxon | denotes | rice | 4530 |
Anatomy-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 877-883 | Body_part | denotes | grisea | http://purl.obolibrary.org/obo/UBERON_0002020 |