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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 0-21 cand:funRiceGene:323-lesion mimic denotes Sekiguchi lesion gene
M_1 0-21 cand:PO:0000061-lateral root-cap epidermal initial cell denotes Sekiguchi lesion gene
M_2 0-21 cand:PO:0025510-archegonium initial cell denotes Sekiguchi lesion gene
M_3 0-21 cand:PO:0001005-archesporial cells visible stage denotes Sekiguchi lesion gene
M_4 0-21 cand:PO:0030067-protonema side branch initial cell denotes Sekiguchi lesion gene
M_5 0-21 cand:WTO:0000446-Urocystis agropyri denotes Sekiguchi lesion gene
M_6 0-21 cand:PO:0000146-abscission zone denotes Sekiguchi lesion gene
M_7 0-21 cand:funRiceGene:295-stigma length denotes Sekiguchi lesion gene
M_8 0-21 cand:PO:0006501-leaf abscission zone denotes Sekiguchi lesion gene
M_9 0-21 cand:PO:0006503-fruit abscission zone denotes Sekiguchi lesion gene
M_10 0-21 cand:funRiceGene:397-defence response denotes Sekiguchi lesion gene
M_11 602-642 cand:TO:0002674-tryptophan content denotes tryptamine 5-hydroxylase enzyme activity
M_12 602-642 cand:funRiceGene:208-tryptophan aminotransferase denotes tryptamine 5-hydroxylase enzyme activity
M_13 602-642 cand:TO:0000312-NADH glutamate synthase content denotes tryptamine 5-hydroxylase enzyme activity
M_14 602-642 cand:TO:0000599-enzyme activity trait denotes tryptamine 5-hydroxylase enzyme activity
M_15 602-642 cand:PECO:0007070-indole acetic acid exposure denotes tryptamine 5-hydroxylase enzyme activity
M_16 602-642 cand:TO:0000284-ADP glucose pyrophosphorylase activity trait denotes tryptamine 5-hydroxylase enzyme activity
M_17 602-642 cand:TO:0002677-brassinosteroid sensitivity denotes tryptamine 5-hydroxylase enzyme activity
M_18 602-642 cand:TO:0000647-relative acid phosphatase activity denotes tryptamine 5-hydroxylase enzyme activity
M_19 602-642 cand:TO:0000248-primary macronutrient sensitivity denotes tryptamine 5-hydroxylase enzyme activity
M_20 602-642 cand:funRiceGene:500-antimicrobial activity denotes tryptamine 5-hydroxylase enzyme activity
M_21 602-642 cand:TO:0000003-alkali soil sensitivity denotes tryptamine 5-hydroxylase enzyme activity
M_22 461-468 cand:funRiceGene:336-homeobox gene denotes SL gene
M_23 461-468 cand:funRiceGene:333-transcription suppressor denotes SL gene
M_24 461-468 cand:funRiceGene:32-transcription regulator denotes SL gene
M_25 461-468 cand:PECO:0007307-transposable element insert exposure denotes SL gene
M_26 461-468 cand:funRiceGene:216-transcriptional regulator denotes SL gene
M_27 461-468 cand:TO:0002687-cell elongation trait denotes SL gene
M_28 461-468 cand:PO:0020012-sexine denotes SL gene
M_29 461-468 cand:PO:0020105-ligule denotes SL gene
M_30 461-468 cand:funRiceGene:347-stamen denotes SL gene
M_31 461-468 cand:funRiceGene:55-flavone denotes SL gene
M_32 461-468 cand:PO:0025197-stele denotes SL gene
M_33 32-61 GeneID:NA denotes cytochrome P450 monooxygenase
M_34 602-626 GeneID:RAPID:Os12g0268000MSUID:LOC_Os12g16720GraID:GR:0060895 denotes tryptamine 5-hydroxylase
M_35 516-523 GeneID:RAPID:Os12g0268000MSUID:LOC_Os12g16720GraID:GR:0060895 denotes CYP71P1
T70764 1009-1028 xzyao:29221 denotes suspension cultures
T57420 602-642 xzyao:21407 denotes tryptamine 5-hydroxylase enzyme activity
T35831 1043-1053 funRiceGene:228 denotes resistance
T84305 865-883 xzyao:33703 denotes Magnaporthe grisea
T69700 472-489 funRiceGene:79, xzyao:10375 denotes map-based cloning
T84732 1323-1331 funRiceGene:153 denotes immunity
T36425 0-16 xzyao:44070 denotes Sekiguchi lesion
T30175 342-358 xzyao:44070 denotes sekiguchi lesion
T98506 962-974 xzyao:4768 denotes defense gene
T813 1126-1138 xzyao:4768 denotes defense gene
T39220 1236-1245 xzyao:13565 denotes G protein
T51858 627-642 xzyao:15695 denotes enzyme activity
T24878 909-914 funRiceGene:223 denotes blast
T16216 1062-1067 funRiceGene:223 denotes blast
T60444 962-985 xzyao:35824 denotes defense gene expression
T54910 1126-1149 xzyao:35824 denotes defense gene expression
T98516 1033-1053 xzyao:13714 denotes increased resistance
T74640 915-922 WTO:0000130, funRiceGene:18 denotes disease
T46141 904-922 xzyao:3154 denotes rice blast disease
T2601 962-969 funRiceGene:307 denotes defense
T15050 1126-1133 funRiceGene:307 denotes defense
T72970 1311-1331 xzyao:37446 denotes rice innate immunity
T74529 909-922 funRiceGene:148, xzyao:17825 denotes blast disease
T58814 1316-1331 funRiceGene:41, xzyao:32952 denotes innate immunity
T2004 990-1000 funRiceGene:394, xzyao:352 denotes cell death
T77848 1062-1077 xzyao:42868 denotes blast infection
T56888 10-16 funRiceGene:171 denotes lesion
T80021 352-358 funRiceGene:171 denotes lesion
T28984 904-914 xzyao:29995 denotes rice blast
T82939 1057-1067 xzyao:29995 denotes rice blast
T45113 270-290 xzyao:36787 denotes biosynthesis pathway
T91697 105-114 hunflair:NA:Chemical denotes serotonin
T21211 260-269 hunflair:NA:Chemical denotes serotonin
T68520 421-430 hunflair:NA:Chemical denotes serotonin
T4864 689-698 hunflair:NA:Chemical denotes serotonin
T13551 944-953 hunflair:NA:Chemical denotes serotonin
M_36 1108-1117 hunflair:NA:Chemical denotes serotonin
M_37 1274-1283 hunflair:NA:Chemical denotes serotonin
M_38 796-824 hunflair:NA:Chemical denotes N-acetylchitooligosaccharide
M_39 529-565 hunflair:NA:Gene denotes cytochrome P450 monooxygenase family
M_40 865-883 hunflair:NA:Species denotes Magnaporthe grisea
M_41 1169-1178 hunflair:NA:Gene denotes RacGTPase
M_42 124-133 hunflair:NA:Chemical denotes Serotonin
M_43 1062-1077 hunflair:NA:Disease denotes blast infection
M_44 1221-1245 hunflair:NA:Gene denotes heterotrimeric G protein
M_45 91-101 hunflair:NA:Chemical denotes tryptamine
M_46 383-393 hunflair:NA:Chemical denotes tryptamine
M_47 602-612 hunflair:NA:Chemical denotes tryptamine
M_48 675-685 hunflair:NA:Chemical denotes tryptamine
M_49 904-922 hunflair:NA:Disease denotes rice blast disease
M_50 516-523 hunflair:NA:Gene denotes CYP71P1
M_51 602-626 hunflair:NA:Gene denotes tryptamine 5-hydroxylase
M_52 170-177 hunflair:NA:Species denotes mammals
M_53 751-758 hunflair:NA:Species denotes mammals
M_54 461-463 hunflair:NA:Gene denotes SL
M_55 581-583 hunflair:NA:Gene denotes SL
M_56 774-776 hunflair:NA:Gene denotes SL
M_57 1004-1028 hunflair:NA:CellLine denotes rice suspension cultures
M_58 118-122 hunflair:NA:Species denotes rice
M_59 337-341 hunflair:NA:Species denotes rice
M_60 904-908 hunflair:NA:Species denotes rice
M_61 1004-1008 hunflair:NA:Species denotes rice
M_62 1057-1061 hunflair:NA:Species denotes rice
M_63 1311-1315 hunflair:NA:Species denotes rice
M_64 1198-1213 hunflair:NA:Gene denotes G alpha subunit
M_65 237-243 hunflair:NA:Species denotes humans
M_66 32-61 hunflair:NA:Gene denotes cytochrome P450 monooxygenase
M_67 529-558 hunflair:NA:Gene denotes cytochrome P450 monooxygenase
M_68 796-797 pubtator:MESH:D009584:Chemical denotes N
M_69 124-133 pubtator:MESH:D012701:Chemical denotes Serotonin
M_70 91-101 pubtator:MESH:C030820:Chemical denotes tryptamine
M_71 383-393 pubtator:MESH:C030820:Chemical denotes tryptamine
M_72 602-612 pubtator:MESH:C030820:Chemical denotes tryptamine
M_73 675-685 pubtator:MESH:C030820:Chemical denotes tryptamine
M_74 850-859 pubtator:MESH:D007239:Disease denotes infection
M_75 1068-1077 pubtator:MESH:D007239:Disease denotes infection
M_76 237-243 pubtator:9606:Species denotes humans
M_77 1062-1077 pubtator:MESH:D001753:Disease denotes blast infection
M_78 0-16 pubtator:MESH:D051437:Disease denotes Sekiguchi lesion
M_79 118-122 pubtator:4530:Species denotes rice
M_80 337-341 pubtator:4530:Species denotes rice
M_81 904-908 pubtator:4530:Species denotes rice
M_82 1004-1008 pubtator:4530:Species denotes rice
M_83 1057-1061 pubtator:4530:Species denotes rice
M_84 1311-1315 pubtator:4530:Species denotes rice
M_85 865-883 pubtator:148305:Species denotes Magnaporthe grisea
M_86 105-114 pubtator:MESH:D012701:Chemical denotes serotonin
M_87 260-269 pubtator:MESH:D012701:Chemical denotes serotonin
M_88 421-430 pubtator:MESH:D012701:Chemical denotes serotonin
M_89 689-698 pubtator:MESH:D012701:Chemical denotes serotonin
M_90 944-953 pubtator:MESH:D012701:Chemical denotes serotonin
M_91 1108-1117 pubtator:MESH:D012701:Chemical denotes serotonin
M_92 1274-1283 pubtator:MESH:D012701:Chemical denotes serotonin

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1057-1077 xzyao:5555 denotes rice blast infection
M_1 472-489 funRiceGene:79, xzyao:16212 denotes map-based cloning
M_2 990-1000 funRiceGene:394, xzyao:6499 denotes cell death
M_3 1043-1053 funRiceGene:228 denotes resistance
M_4 962-969 funRiceGene:307 denotes defense
M_5 1126-1133 funRiceGene:307 denotes defense
M_6 909-914 funRiceGene:223 denotes blast
M_7 1062-1067 funRiceGene:223 denotes blast
M_8 352-358 funRiceGene:171 denotes lesion
M_9 904-922 hunflair:NA:Disease denotes rice blast disease
M_10 1169-1178 hunflair:NA:Gene denotes RacGTPase
M_11 91-101 hunflair:NA:Chemical denotes tryptamine
M_12 383-393 hunflair:NA:Chemical denotes tryptamine
M_13 602-612 hunflair:NA:Chemical denotes tryptamine
M_14 675-685 hunflair:NA:Chemical denotes tryptamine
M_15 124-133 hunflair:NA:Chemical denotes Serotonin
M_16 602-626 hunflair:NA:Gene denotes tryptamine 5-hydroxylase
M_17 796-824 hunflair:NA:Chemical denotes N-acetylchitooligosaccharide
M_18 105-114 hunflair:NA:Chemical denotes serotonin
M_19 260-269 hunflair:NA:Chemical denotes serotonin
M_20 421-430 hunflair:NA:Chemical denotes serotonin
M_21 689-698 hunflair:NA:Chemical denotes serotonin
M_22 944-953 hunflair:NA:Chemical denotes serotonin
M_23 1108-1117 hunflair:NA:Chemical denotes serotonin
M_24 1274-1283 hunflair:NA:Chemical denotes serotonin
M_25 1198-1213 hunflair:NA:Gene denotes G alpha subunit
M_26 865-883 hunflair:NA:Species denotes Magnaporthe grisea
M_27 1004-1028 hunflair:NA:CellLine denotes rice suspension cultures
M_28 237-243 hunflair:NA:Species denotes humans
M_29 32-61 hunflair:NA:Gene denotes cytochrome P450 monooxygenase
M_30 529-558 hunflair:NA:Gene denotes cytochrome P450 monooxygenase
M_31 1221-1245 hunflair:NA:Gene denotes heterotrimeric G protein
M_32 461-463 hunflair:NA:Gene denotes SL
M_33 581-583 hunflair:NA:Gene denotes SL
M_34 774-776 hunflair:NA:Gene denotes SL
M_35 529-565 hunflair:NA:Gene denotes cytochrome P450 monooxygenase family
M_36 1062-1077 hunflair:NA:Disease denotes blast infection
M_37 170-177 hunflair:NA:Species denotes mammals
M_38 751-758 hunflair:NA:Species denotes mammals
M_39 118-122 hunflair:NA:Species denotes rice
M_40 337-341 hunflair:NA:Species denotes rice
M_41 904-908 hunflair:NA:Species denotes rice
M_42 1004-1008 hunflair:NA:Species denotes rice
M_43 1057-1061 hunflair:NA:Species denotes rice
M_44 1311-1315 hunflair:NA:Species denotes rice
M_45 516-523 hunflair:NA:Gene denotes CYP71P1
M_46 91-101 pubtator:MESH:C030820:Chemical denotes tryptamine
M_47 383-393 pubtator:MESH:C030820:Chemical denotes tryptamine
M_48 602-612 pubtator:MESH:C030820:Chemical denotes tryptamine
M_49 675-685 pubtator:MESH:C030820:Chemical denotes tryptamine
M_50 850-859 pubtator:MESH:D007239:Disease denotes infection
M_51 1068-1077 pubtator:MESH:D007239:Disease denotes infection
M_52 1062-1077 pubtator:MESH:D001753:Disease denotes blast infection
M_53 865-883 pubtator:148305:Species denotes Magnaporthe grisea
M_54 124-133 pubtator:MESH:D012701:Chemical denotes Serotonin
M_55 237-243 pubtator:9606:Species denotes humans
M_56 796-797 pubtator:MESH:D009584:Chemical denotes N
M_57 0-16 pubtator:MESH:D051437:Disease denotes Sekiguchi lesion
M_58 105-114 pubtator:MESH:D012701:Chemical denotes serotonin
M_59 260-269 pubtator:MESH:D012701:Chemical denotes serotonin
M_60 421-430 pubtator:MESH:D012701:Chemical denotes serotonin
M_61 689-698 pubtator:MESH:D012701:Chemical denotes serotonin
M_62 944-953 pubtator:MESH:D012701:Chemical denotes serotonin
M_63 1108-1117 pubtator:MESH:D012701:Chemical denotes serotonin
M_64 1274-1283 pubtator:MESH:D012701:Chemical denotes serotonin
M_65 118-122 pubtator:4530:Species denotes rice
M_66 337-341 pubtator:4530:Species denotes rice
M_67 904-908 pubtator:4530:Species denotes rice
M_68 1004-1008 pubtator:4530:Species denotes rice
M_69 1057-1061 pubtator:4530:Species denotes rice
M_70 1311-1315 pubtator:4530:Species denotes rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 360-362 http://identifiers.org/oryzabase.gene/960 denotes sl
T2 360-362 http://identifiers.org/oryzabase.gene/2096 denotes sl
T3 461-463 http://identifiers.org/oryzabase.gene/2096 denotes SL
T4 516-523 http://identifiers.org/oryzabase.gene/2096 denotes CYP71P1
T5 581-583 http://identifiers.org/oryzabase.gene/2096 denotes SL
T6 774-776 http://identifiers.org/oryzabase.gene/2096 denotes SL
T78470 360-362 http://identifiers.org/rapdb.locus/Os12g0268000 denotes sl
T43368 461-463 http://identifiers.org/rapdb.locus/Os12g0268000 denotes SL
T22148 516-523 http://identifiers.org/rapdb.locus/Os12g0268000 denotes CYP71P1
T69768 581-583 http://identifiers.org/rapdb.locus/Os12g0268000 denotes SL
T85651 774-776 http://identifiers.org/rapdb.locus/Os12g0268000 denotes SL

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 0-16 http://identifiers.org/oryzabase.gene/2096 denotes Sekiguchi lesion
T2 32-47 http://identifiers.org/oryzabase.gene/22576 denotes cytochrome P450
T3 32-47 http://identifiers.org/oryzabase.gene/18249 denotes cytochrome P450
T4 32-47 http://identifiers.org/oryzabase.gene/16778 denotes cytochrome P450
T5 342-358 http://identifiers.org/oryzabase.gene/2096 denotes sekiguchi lesion
T6 529-544 http://identifiers.org/oryzabase.gene/22576 denotes cytochrome P450
T7 529-544 http://identifiers.org/oryzabase.gene/18249 denotes cytochrome P450
T8 529-544 http://identifiers.org/oryzabase.gene/16778 denotes cytochrome P450

sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.
T2 124-244 Sentence denotes Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans.
T3 245-332 Sentence denotes In plants, the serotonin biosynthesis pathway and its function are not well understood.
T4 333-444 Sentence denotes The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis.
T5 445-566 Sentence denotes We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family.
T6 567-699 Sentence denotes A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin.
T7 700-759 Sentence denotes This pathway is novel and has not been reported in mammals.
T8 760-923 Sentence denotes Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease.
T9 924-1088 Sentence denotes Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants.
T10 1089-1246 Sentence denotes We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein.
T11 1247-1332 Sentence denotes These results suggest that serotonin plays an important role in rice innate immunity.

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1198-1213 hunflair:NA:Gene denotes G alpha subunit
M_1 1004-1028 hunflair:NA:CellLine denotes rice suspension cultures
M_2 1221-1245 hunflair:NA:Gene denotes heterotrimeric G protein
M_3 516-523 hunflair:NA:Gene denotes CYP71P1
M_4 529-565 hunflair:NA:Gene denotes cytochrome P450 monooxygenase family
M_5 865-883 hunflair:NA:Species denotes Magnaporthe grisea
M_6 796-824 hunflair:NA:Chemical denotes N-acetylchitooligosaccharide
M_7 91-101 hunflair:NA:Chemical denotes tryptamine
M_8 383-393 hunflair:NA:Chemical denotes tryptamine
M_9 602-612 hunflair:NA:Chemical denotes tryptamine
M_10 675-685 hunflair:NA:Chemical denotes tryptamine
M_11 904-922 hunflair:NA:Disease denotes rice blast disease
M_12 118-122 hunflair:NA:Species denotes rice
M_13 337-341 hunflair:NA:Species denotes rice
M_14 904-908 hunflair:NA:Species denotes rice
M_15 1004-1008 hunflair:NA:Species denotes rice
M_16 1057-1061 hunflair:NA:Species denotes rice
M_17 1311-1315 hunflair:NA:Species denotes rice
M_18 32-61 hunflair:NA:Gene denotes cytochrome P450 monooxygenase
M_19 529-558 hunflair:NA:Gene denotes cytochrome P450 monooxygenase
M_20 124-133 hunflair:NA:Chemical denotes Serotonin
M_21 170-177 hunflair:NA:Species denotes mammals
M_22 751-758 hunflair:NA:Species denotes mammals
M_23 237-243 hunflair:NA:Species denotes humans
M_24 602-626 hunflair:NA:Gene denotes tryptamine 5-hydroxylase
M_25 1062-1077 hunflair:NA:Disease denotes blast infection
M_26 1169-1178 hunflair:NA:Gene denotes RacGTPase
M_27 461-463 hunflair:NA:Gene denotes SL
M_28 581-583 hunflair:NA:Gene denotes SL
M_29 774-776 hunflair:NA:Gene denotes SL
M_30 105-114 hunflair:NA:Chemical denotes serotonin
M_31 260-269 hunflair:NA:Chemical denotes serotonin
M_32 421-430 hunflair:NA:Chemical denotes serotonin
M_33 689-698 hunflair:NA:Chemical denotes serotonin
M_34 944-953 hunflair:NA:Chemical denotes serotonin
M_35 1108-1117 hunflair:NA:Chemical denotes serotonin
M_36 1274-1283 hunflair:NA:Chemical denotes serotonin

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 0-16 http://identifiers.org/oryzabase.gene/2096 denotes Sekiguchi lesion
T2 32-47 http://identifiers.org/oryzabase.gene/22648 denotes cytochrome P450
T3 32-47 http://identifiers.org/oryzabase.gene/22576 denotes cytochrome P450
T4 32-47 http://identifiers.org/oryzabase.gene/16778 denotes cytochrome P450
T5 342-358 http://identifiers.org/oryzabase.gene/2096 denotes sekiguchi lesion
T6 360-362 http://identifiers.org/oryzabase.gene/960 denotes sl
T7 360-362 http://identifiers.org/oryzabase.gene/2096 denotes sl
T8 461-463 http://identifiers.org/oryzabase.gene/2096 denotes SL
T9 472-475 http://identifiers.org/oryzabase.gene/12401 denotes map
T10 516-523 http://identifiers.org/oryzabase.gene/2096 denotes CYP71P1
T11 529-544 http://identifiers.org/oryzabase.gene/22648 denotes cytochrome P450
T12 529-544 http://identifiers.org/oryzabase.gene/22576 denotes cytochrome P450
T13 529-544 http://identifiers.org/oryzabase.gene/16778 denotes cytochrome P450
T14 581-583 http://identifiers.org/oryzabase.gene/2096 denotes SL
T15 602-626 http://identifiers.org/oryzabase.gene/2096 denotes tryptamine 5-hydroxylase
T16 774-776 http://identifiers.org/oryzabase.gene/2096 denotes SL
T69473 0-16 http://identifiers.org/ricegap/LOC_Os12g16720 denotes Sekiguchi lesion
T91135 32-47 http://identifiers.org/ricegap/LOC_Os10g36980 denotes cytochrome P450
T81543 32-47 http://identifiers.org/ricegap/LOC_Os08g43440 denotes cytochrome P450
T53217 32-47 http://identifiers.org/ricegap/LOC_Os02g26770 denotes cytochrome P450
T64683 342-358 http://identifiers.org/ricegap/LOC_Os12g16720 denotes sekiguchi lesion
T30889 360-362 http://identifiers.org/ricegap/LOC_Os12g16720 denotes sl
T49205 461-463 http://identifiers.org/ricegap/LOC_Os12g16720 denotes SL
T1256 472-475 http://identifiers.org/ricegap/LOC_Os08g40620 denotes map
T20761 516-523 http://identifiers.org/ricegap/LOC_Os12g16720 denotes CYP71P1
T43364 529-544 http://identifiers.org/ricegap/LOC_Os10g36980 denotes cytochrome P450
T21784 529-544 http://identifiers.org/ricegap/LOC_Os08g43440 denotes cytochrome P450
T50629 529-544 http://identifiers.org/ricegap/LOC_Os02g26770 denotes cytochrome P450
T49717 581-583 http://identifiers.org/ricegap/LOC_Os12g16720 denotes SL
T86977 602-626 http://identifiers.org/ricegap/LOC_Os12g16720 denotes tryptamine 5-hydroxylase
T93549 774-776 http://identifiers.org/ricegap/LOC_Os12g16720 denotes SL
T23188 0-16 http://identifiers.org/rapdb.locus/Os12g0268000 denotes Sekiguchi lesion
T27714 32-47 http://identifiers.org/rapdb.locus/Os10g0513900 denotes cytochrome P450
T907 32-47 http://identifiers.org/rapdb.locus/Os08g0547900 denotes cytochrome P450
T82223 32-47 http://identifiers.org/rapdb.locus/Os02g0467000 denotes cytochrome P450
T62092 342-358 http://identifiers.org/rapdb.locus/Os12g0268000 denotes sekiguchi lesion
T86994 360-362 http://identifiers.org/rapdb.locus/Os12g0268000 denotes sl
T77532 461-463 http://identifiers.org/rapdb.locus/Os12g0268000 denotes SL
T79546 472-475 http://identifiers.org/rapdb.locus/Os08g0518100 denotes map
T80401 516-523 http://identifiers.org/rapdb.locus/Os12g0268000 denotes CYP71P1
T74803 529-544 http://identifiers.org/rapdb.locus/Os10g0513900 denotes cytochrome P450
T41610 529-544 http://identifiers.org/rapdb.locus/Os08g0547900 denotes cytochrome P450
T47214 529-544 http://identifiers.org/rapdb.locus/Os02g0467000 denotes cytochrome P450
T1075 581-583 http://identifiers.org/rapdb.locus/Os12g0268000 denotes SL
T18170 602-626 http://identifiers.org/rapdb.locus/Os12g0268000 denotes tryptamine 5-hydroxylase
T16818 774-776 http://identifiers.org/rapdb.locus/Os12g0268000 denotes SL
T27651 0-16 http://identifiers.org/uniprot/Q2QUC5 denotes Sekiguchi lesion
T1679 32-47 http://identifiers.org/uniprot/B4FQ24 denotes cytochrome P450
T59259 32-47 http://identifiers.org/refseq/NP_001151365.1 denotes cytochrome P450
T80799 32-47 http://identifiers.org/refseq/NP_001147503.1 denotes cytochrome P450
T94767 342-358 http://identifiers.org/uniprot/Q2QUC5 denotes sekiguchi lesion
T44309 360-362 http://identifiers.org/uniprot/Q2QUC5 denotes sl
T30173 461-463 http://identifiers.org/uniprot/Q2QUC5 denotes SL
T47824 516-523 http://identifiers.org/uniprot/Q2QUC5 denotes CYP71P1
T96584 529-544 http://identifiers.org/uniprot/B4FQ24 denotes cytochrome P450
T87256 529-544 http://identifiers.org/refseq/NP_001151365.1 denotes cytochrome P450
T44301 529-544 http://identifiers.org/refseq/NP_001147503.1 denotes cytochrome P450
T52985 581-583 http://identifiers.org/uniprot/Q2QUC5 denotes SL
T25921 602-626 http://identifiers.org/uniprot/Q2QUC5 denotes tryptamine 5-hydroxylase
T38208 774-776 http://identifiers.org/uniprot/Q2QUC5 denotes SL
M_0 1198-1213 hunflair:NA:Gene denotes G alpha subunit
M_1 1004-1028 hunflair:NA:CellLine denotes rice suspension cultures
M_2 1221-1245 hunflair:NA:Gene denotes heterotrimeric G protein
M_3 516-523 hunflair:NA:Gene denotes CYP71P1
M_4 529-565 hunflair:NA:Gene denotes cytochrome P450 monooxygenase family
M_5 865-883 hunflair:NA:Species denotes Magnaporthe grisea
M_6 796-824 hunflair:NA:Chemical denotes N-acetylchitooligosaccharide
M_7 91-101 hunflair:NA:Chemical denotes tryptamine
M_8 383-393 hunflair:NA:Chemical denotes tryptamine
M_9 602-612 hunflair:NA:Chemical denotes tryptamine
M_10 675-685 hunflair:NA:Chemical denotes tryptamine
M_11 904-922 hunflair:NA:Disease denotes rice blast disease
M_12 118-122 hunflair:NA:Species denotes rice
M_13 337-341 hunflair:NA:Species denotes rice
M_14 904-908 hunflair:NA:Species denotes rice
M_15 1004-1008 hunflair:NA:Species denotes rice
M_16 1057-1061 hunflair:NA:Species denotes rice
M_17 1311-1315 hunflair:NA:Species denotes rice
M_18 32-61 hunflair:NA:Gene denotes cytochrome P450 monooxygenase
M_19 529-558 hunflair:NA:Gene denotes cytochrome P450 monooxygenase
M_20 124-133 hunflair:NA:Chemical denotes Serotonin
M_21 170-177 hunflair:NA:Species denotes mammals
M_22 751-758 hunflair:NA:Species denotes mammals
M_23 237-243 hunflair:NA:Species denotes humans
M_24 602-626 hunflair:NA:Gene denotes tryptamine 5-hydroxylase
M_25 1062-1077 hunflair:NA:Disease denotes blast infection
M_26 1169-1178 hunflair:NA:Gene denotes RacGTPase
M_27 461-463 hunflair:NA:Gene denotes SL
M_28 581-583 hunflair:NA:Gene denotes SL
M_29 774-776 hunflair:NA:Gene denotes SL
M_30 105-114 hunflair:NA:Chemical denotes serotonin
M_31 260-269 hunflair:NA:Chemical denotes serotonin
M_32 421-430 hunflair:NA:Chemical denotes serotonin
M_33 689-698 hunflair:NA:Chemical denotes serotonin
M_34 944-953 hunflair:NA:Chemical denotes serotonin
M_35 1108-1117 hunflair:NA:Chemical denotes serotonin
M_36 1274-1283 hunflair:NA:Chemical denotes serotonin

Allie

Id Subject Object Predicate Lexical cue
SS1_20150424_3_0 342-358 expanded denotes sekiguchi lesion
SS2_20150424_3_0 360-362 abbr denotes sl
AE1_20150424_3_0 SS1_20150424_3_0 SS2_20150424_3_0 abbreviatedTo sekiguchi lesion,sl

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 850-859 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T2 1068-1077 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 826-832 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 850-859 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T2 1068-1077 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 118-122 OrganismTaxon denotes rice 4530
T2 337-341 OrganismTaxon denotes rice 4530
T3 865-883 OrganismTaxon denotes Magnaporthe grisea 148305
T4 904-908 OrganismTaxon denotes rice 4530
T5 1004-1008 OrganismTaxon denotes rice 4530
T6 1057-1061 OrganismTaxon denotes rice 4530
T7 1311-1315 OrganismTaxon denotes rice 4530

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 877-883 Body_part denotes grisea http://purl.obolibrary.org/obo/UBERON_0002020

sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.
T2 124-244 Sentence denotes Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans.
T3 245-332 Sentence denotes In plants, the serotonin biosynthesis pathway and its function are not well understood.
T4 333-444 Sentence denotes The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis.
T5 445-566 Sentence denotes We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family.
T6 567-699 Sentence denotes A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin.
T7 700-759 Sentence denotes This pathway is novel and has not been reported in mammals.
T8 760-923 Sentence denotes Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease.
T9 924-1088 Sentence denotes Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants.
T10 1089-1246 Sentence denotes We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein.
T11 1247-1332 Sentence denotes These results suggest that serotonin plays an important role in rice innate immunity.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.
T2 124-244 Sentence denotes Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans.
T3 245-332 Sentence denotes In plants, the serotonin biosynthesis pathway and its function are not well understood.
T4 333-444 Sentence denotes The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis.
T5 445-566 Sentence denotes We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family.
T6 567-699 Sentence denotes A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin.
T7 700-759 Sentence denotes This pathway is novel and has not been reported in mammals.
T8 760-923 Sentence denotes Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease.
T9 924-1088 Sentence denotes Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants.
T10 1089-1246 Sentence denotes We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein.
T11 1247-1332 Sentence denotes These results suggest that serotonin plays an important role in rice innate immunity.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue glycosmos_id image
T1 826-832 Glycan denotes chitin https://glycosmos.org/glycans/show/G97099AY https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.
T2 124-244 Sentence denotes Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans.
T3 245-332 Sentence denotes In plants, the serotonin biosynthesis pathway and its function are not well understood.
T4 333-444 Sentence denotes The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis.
T5 445-566 Sentence denotes We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family.
T6 567-699 Sentence denotes A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin.
T7 700-759 Sentence denotes This pathway is novel and has not been reported in mammals.
T8 760-923 Sentence denotes Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease.
T9 924-1088 Sentence denotes Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants.
T10 1089-1246 Sentence denotes We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein.
T11 1247-1332 Sentence denotes These results suggest that serotonin plays an important role in rice innate immunity.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.
T2 124-244 Sentence denotes Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans.
T3 245-332 Sentence denotes In plants, the serotonin biosynthesis pathway and its function are not well understood.
T4 333-444 Sentence denotes The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis.
T5 445-566 Sentence denotes We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family.
T6 567-699 Sentence denotes A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin.
T7 700-759 Sentence denotes This pathway is novel and has not been reported in mammals.
T8 760-923 Sentence denotes Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease.
T9 924-1088 Sentence denotes Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants.
T10 1089-1246 Sentence denotes We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein.
T11 1247-1332 Sentence denotes These results suggest that serotonin plays an important role in rice innate immunity.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.
T2 124-244 Sentence denotes Serotonin is a well known neurotransmitter in mammals and plays an important role in various mental functions in humans.
T3 245-332 Sentence denotes In plants, the serotonin biosynthesis pathway and its function are not well understood.
T4 333-444 Sentence denotes The rice sekiguchi lesion (sl) mutants accumulate tryptamine, a candidate substrate for serotonin biosynthesis.
T5 445-566 Sentence denotes We isolated the SL gene by map-based cloning and found that it encodes CYP71P1 in a cytochrome P450 monooxygenase family.
T6 567-699 Sentence denotes A recombinant SL protein exhibited tryptamine 5-hydroxylase enzyme activity and catalyzed the conversion of tryptamine to serotonin.
T7 700-759 Sentence denotes This pathway is novel and has not been reported in mammals.
T8 760-923 Sentence denotes Expression of SL was induced by the N-acetylchitooligosaccharide (chitin) elicitor and by infection with Magnaporthe grisea, a causal agent for rice blast disease.
T9 924-1088 Sentence denotes Exogenously applied serotonin induced defense gene expression and cell death in rice suspension cultures and increased resistance to rice blast infection in plants.
T10 1089-1246 Sentence denotes We also found that serotonin-induced defense gene expression is mediated by the RacGTPase pathway and by the G alpha subunit of the heterotrimeric G protein.
T11 1247-1332 Sentence denotes These results suggest that serotonin plays an important role in rice innate immunity.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 118-122 OrganismTaxon denotes rice 4530
T2 337-341 OrganismTaxon denotes rice 4530
T3 865-883 OrganismTaxon denotes Magnaporthe grisea 148305
T4 904-908 OrganismTaxon denotes rice 4530
T5 1004-1008 OrganismTaxon denotes rice 4530
T6 1057-1061 OrganismTaxon denotes rice 4530
T7 1311-1315 OrganismTaxon denotes rice 4530

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 877-883 Body_part denotes grisea http://purl.obolibrary.org/obo/UBERON_0002020