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PubMed:20143913 / 0-308 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-132 Sentence denotes Large deletion involving exon 5 of the arylsulfatase B gene caused apparent homozygosity in a mucopolysaccharidosis type VI patient.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
7098 39-54 GeneOrGeneProduct denotes arylsulfatase B NCBIGene:411
7099 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI MESH:D009087
7100 124-131 OrganismTaxon denotes patient NCBITaxon:9606
7101 172-179 SequenceVariant denotes p.R315X p|SUB|R|315|X
7102 205-220 GeneOrGeneProduct denotes arylsulfatase B NCBIGene:411
7103 222-226 GeneOrGeneProduct denotes ARSB NCBIGene:411
7104 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI MESH:D009087
7105 268-275 OrganismTaxon denotes patient NCBITaxon:9606

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 94-115 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis 0019249
T2 238-259 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis 0019249

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T1 172-179 SequenceVariant denotes p.R315X

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 0-5 GeneOrGeneProduct denotes Large
T2 39-54 GeneOrGeneProduct denotes arylsulfatase B
T3 89-93 GeneOrGeneProduct denotes in a
T4 163-171 GeneOrGeneProduct denotes mutation
T5 205-220 GeneOrGeneProduct denotes arylsulfatase B
T6 222-226 GeneOrGeneProduct denotes ARSB
T7 228-237 GeneOrGeneProduct denotes gene in a

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 0-5 GeneOrGeneProduct denotes Large
T2 39-54 GeneOrGeneProduct denotes arylsulfatase B
T3 205-220 GeneOrGeneProduct denotes arylsulfatase B
T4 222-226 GeneOrGeneProduct denotes ARSB

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI D009087
T2 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI D009087

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 39-54 GeneOrGeneProduct denotes arylsulfatase B
T2 205-220 GeneOrGeneProduct denotes arylsulfatase B
T3 222-226 GeneOrGeneProduct denotes ARSB

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI 0009661
T2 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI 0009661

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI D009087
T2 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI D009087

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI D009087
T2 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI D009087

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 124-131 OrganismTaxon denotes patient
T2 268-275 OrganismTaxon denotes patient

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 39-54 ChemicalEntity denotes arylsulfatase B D020051
T2 205-220 ChemicalEntity denotes arylsulfatase B D020051
T3 222-226 ChemicalEntity denotes ARSB D020051

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T3 222-226 ChemicalEntity denotes ARSB D020051
T2 205-220 ChemicalEntity denotes arylsulfatase B D020051
T1 39-54 ChemicalEntity denotes arylsulfatase B D020051
T46094 222-226 GeneOrGeneProduct denotes ARSB
T22214 205-220 GeneOrGeneProduct denotes arylsulfatase B
T37591 39-54 GeneOrGeneProduct denotes arylsulfatase B
T95114 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI D009087
T98066 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI D009087
T11111 268-275 OrganismTaxon denotes patient
T14962 124-131 OrganismTaxon denotes patient
T47921 172-179 SequenceVariant denotes p.R315X

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-132 Sentence denotes Large deletion involving exon 5 of the arylsulfatase B gene caused apparent homozygosity in a mucopolysaccharidosis type VI patient.
T1 0-132 Sentence denotes Large deletion involving exon 5 of the arylsulfatase B gene caused apparent homozygosity in a mucopolysaccharidosis type VI patient.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 39-54 gene:411 denotes arylsulfatase B
T1 94-123 disease:C0026709 denotes mucopolysaccharidosis type VI
T2 205-220 gene:411 denotes arylsulfatase B
T3 238-267 disease:C0026709 denotes mucopolysaccharidosis type VI
T4 222-226 gene:411 denotes ARSB
T5 238-267 disease:C0026709 denotes mucopolysaccharidosis type VI
R1 T0 T1 associated_with arylsulfatase B,mucopolysaccharidosis type VI
R2 T2 T3 associated_with arylsulfatase B,mucopolysaccharidosis type VI
R3 T4 T5 associated_with ARSB,mucopolysaccharidosis type VI

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 238-259 HP_0008155 denotes mucopolysaccharidosis

Allie

Id Subject Object Predicate Lexical cue
SS1_20143913_1_0 205-220 expanded denotes arylsulfatase B
SS2_20143913_1_0 222-226 abbr denotes ARSB
AE1_20143913_1_0 SS1_20143913_1_0 SS2_20143913_1_0 abbreviatedTo arylsulfatase B,ARSB

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
20143913-0#39#54#gene411 39-54 gene411 denotes arylsulfatase B
20143913-0#94#123#diseaseC0026709 94-123 diseaseC0026709 denotes mucopolysaccharidosis type VI
39#54#gene41194#123#diseaseC0026709 20143913-0#39#54#gene411 20143913-0#94#123#diseaseC0026709 associated_with arylsulfatase B,mucopolysaccharidosis type VI

PubCasesORDO

Id Subject Object Predicate Lexical cue
TI1 94-123 ORDO:583 denotes mucopolysaccharidosis type VI
AB1 238-267 ORDO:583 denotes mucopolysaccharidosis type VI

tmVarCorpus

Id Subject Object Predicate Lexical cue
T1 172-179 ProteinMutation:p|SUB|R|315|X denotes p.R315X

biored-valid

Id Subject Object Predicate Lexical cue
T1 39-54 GeneOrGeneProduct denotes arylsulfatase B
T2 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T3 124-131 OrganismTaxon denotes patient
T4 172-179 SequenceVariant denotes p.R315X
T5 205-220 GeneOrGeneProduct denotes arylsulfatase B
T6 222-226 GeneOrGeneProduct denotes ARSB
T7 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T8 268-275 OrganismTaxon denotes patient

biored-valid-deepseek-nr-ng

Id Subject Object Predicate Lexical cue
T1 25-29 SequenceVariant denotes exon
T2 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T3 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T4 191-197 SequenceVariant denotes exon 5
T5 205-227 GeneOrGeneProduct denotes arylsulfatase B (ARSB)
T6 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-deepseek-nr-g

Id Subject Object Predicate Lexical cue
T1 25-31 SequenceVariant denotes exon 5
T2 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T3 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T4 172-179 SequenceVariant denotes p.R315X
T5 191-197 SequenceVariant denotes exon 5
T6 205-227 GeneOrGeneProduct denotes arylsulfatase B (ARSB)
T7 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-deepseek-r-ng

Id Subject Object Predicate Lexical cue
T1 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T2 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T3 172-179 SequenceVariant denotes p.R315X
T4 205-220 GeneOrGeneProduct denotes arylsulfatase B
T5 222-226 GeneOrGeneProduct denotes ARSB
T6 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-deepseek-r-g

Id Subject Object Predicate Lexical cue
T1 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T2 67-88 DiseaseOrPhenotypicFeature denotes apparent homozygosity
T3 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T4 133-154 DiseaseOrPhenotypicFeature denotes Apparent homozygosity
T5 172-179 SequenceVariant denotes p.R315X
T6 205-232 GeneOrGeneProduct denotes arylsulfatase B (ARSB) gene
T7 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gemini-nr-ng

Id Subject Object Predicate Lexical cue
T1 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T2 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T3 172-179 SequenceVariant denotes p.R315X
T4 205-220 GeneOrGeneProduct denotes arylsulfatase B
T5 222-226 GeneOrGeneProduct denotes ARSB
T6 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gemini-r-ng

Id Subject Object Predicate Lexical cue
T1 0-14 SequenceVariant denotes Large deletion
T2 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T3 76-88 DiseaseOrPhenotypicFeature denotes homozygosity
T4 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T5 142-154 DiseaseOrPhenotypicFeature denotes homozygosity
T6 163-171 SequenceVariant denotes mutation
T7 172-179 SequenceVariant denotes p.R315X
T8 205-220 GeneOrGeneProduct denotes arylsulfatase B
T9 222-226 GeneOrGeneProduct denotes ARSB
T10 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gemini-r-g

Id Subject Object Predicate Lexical cue
T1 6-14 SequenceVariant denotes deletion
T2 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T3 67-88 DiseaseOrPhenotypicFeature denotes apparent homozygosity
T4 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T5 133-154 DiseaseOrPhenotypicFeature denotes Apparent homozygosity
T6 172-179 SequenceVariant denotes p.R315X
T7 205-232 GeneOrGeneProduct denotes arylsulfatase B (ARSB) gene
T8 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gpt-r-g

Id Subject Object Predicate Lexical cue
T1 0-14 SequenceVariant denotes Large deletion
T2 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T3 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T4 172-179 SequenceVariant denotes p.R315X
T5 205-232 GeneOrGeneProduct denotes arylsulfatase B (ARSB) gene
T6 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gpt-nr-ng

Id Subject Object Predicate Lexical cue
T1 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T2 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T3 172-179 SequenceVariant denotes p.R315X
T4 205-232 GeneOrGeneProduct denotes arylsulfatase B (ARSB) gene
T5 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gpt-nr-g

Id Subject Object Predicate Lexical cue
T1 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T2 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T3 172-179 SequenceVariant denotes p.R315X
T4 205-232 GeneOrGeneProduct denotes arylsulfatase B (ARSB) gene
T5 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gpt-r-ng

Id Subject Object Predicate Lexical cue
T1 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T2 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T3 172-179 SequenceVariant denotes p.R315X
T4 205-232 GeneOrGeneProduct denotes arylsulfatase B (ARSB) gene
T5 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gemini-nr-g

Id Subject Object Predicate Lexical cue
T1 6-14 SequenceVariant denotes deletion
T2 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T3 76-88 DiseaseOrPhenotypicFeature denotes homozygosity
T4 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T5 142-154 DiseaseOrPhenotypicFeature denotes homozygosity
T6 163-179 SequenceVariant denotes mutation p.R315X
T7 205-220 GeneOrGeneProduct denotes arylsulfatase B
T8 222-226 GeneOrGeneProduct denotes ARSB
T9 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI

biored-valid-gpt-r-m

Id Subject Object Predicate Lexical cue
T1 39-54 GeneOrGeneProduct denotes arylsulfatase B
T2 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T3 124-131 OrganismTaxon denotes patient
T4 172-179 SequenceVariant denotes p.R315X
T5 205-220 GeneOrGeneProduct denotes arylsulfatase B
T6 222-226 GeneOrGeneProduct denotes ARSB
T7 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T8 268-275 OrganismTaxon denotes patient

biored-valid-gemini-r-m

Id Subject Object Predicate Lexical cue
T1 0-14 SequenceVariant denotes Large deletion
T2 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T3 76-88 DiseaseOrPhenotypicFeature denotes homozygosity
T4 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T5 124-131 OrganismTaxon denotes patient
T6 172-179 SequenceVariant denotes p.R315X
T7 205-232 GeneOrGeneProduct denotes arylsulfatase B (ARSB) gene
T8 238-267 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T9 268-275 OrganismTaxon denotes patient

biored-valid-deepseek-r-m

Id Subject Object Predicate Lexical cue
T1 39-59 GeneOrGeneProduct denotes arylsulfatase B gene
T2 94-123 DiseaseOrPhenotypicFeature denotes mucopolysaccharidosis type VI
T3 172-179 SequenceVariant denotes p.R315X
T4 205-232 GeneOrGeneProduct denotes arylsulfatase B (ARSB) gene