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PubMed:20126413 / 0-153 JSON TXT

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LitCoin-sentences

Id	Subject	Object	Predicate	Lexical cue
T1	0-89	Sentence	denotes	U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line.

LitCoin-entities-OrganismTaxon-PD

Id	Subject	Object	Predicate	Lexical cue	db_id
T1	66-71	OrganismTaxon	denotes	human	NCBItxid:9606

LitCoin-entities

Id	Subject	Object	Predicate	Lexical cue	db_id
7071	0-5	CellLine	denotes	U87MG	NCBITaxon:9606
7072	66-71	OrganismTaxon	denotes	human	NCBITaxon:9606
7073	72-78	DiseaseOrPhenotypicFeature	denotes	cancer	MESH:D009369
7074	90-95	CellLine	denotes	U87MG	NCBITaxon:9606
7075	118-133	DiseaseOrPhenotypicFeature	denotes	grade IV glioma	MESH:D005909

LitCoin_Mondo

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	72-78	DiseaseOrPhenotypicFeature	denotes	cancer	0004992
T2	127-133	DiseaseOrPhenotypicFeature	denotes	glioma	0021042

LitCoin-GeneOrGeneProduct-v0

Id	Subject	Object	Predicate	Lexical cue
T1	79-83	GeneOrGeneProduct	denotes	cell
T2	84-88	GeneOrGeneProduct	denotes	line
T3	134-138	GeneOrGeneProduct	denotes	cell
T4	139-143	GeneOrGeneProduct	denotes	line

LitCoin-GeneOrGeneProduct-v2

Id	Subject	Object	Predicate	Lexical cue
T1	79-83	GeneOrGeneProduct	denotes	cell
T2	134-138	GeneOrGeneProduct	denotes	cell

LitCoin-Disease-MeSH

Id	Subject	Object	Predicate	Lexical cue	originalLabel
T1	41-65	DiseaseOrPhenotypicFeature	denotes	cytogenetically aberrant	D002869
T2	72-78	DiseaseOrPhenotypicFeature	denotes	cancer	D009369
T3	127-133	DiseaseOrPhenotypicFeature	denotes	glioma	D005910

LitCoin_Mondo_095

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	127-133	DiseaseOrPhenotypicFeature	denotes	glioma	0100342\|0021042

LitCoin-MeSH-Disease-2

Id	Subject	Object	Predicate	Lexical cue	ID:
T1	72-78	DiseaseOrPhenotypicFeature	denotes	cancer	D009369
T2	127-133	DiseaseOrPhenotypicFeature	denotes	glioma	D005910

LitCoin_CellLine

Id	Subject	Object	Predicate	Lexical cue	cellosaurus_accession_id
T1	0-5	CellLine	denotes	U87MG	CVCL_0022\|CVCL_GP63
T3	90-95	CellLine	denotes	U87MG	CVCL_0022\|CVCL_GP63

LitCoin-MONDO_bioort2019

Id	Subject	Object	Predicate	Lexical cue	#label
T1	72-78	DiseaseOrPhenotypicFeature	denotes	cancer	D009369
T2	127-133	DiseaseOrPhenotypicFeature	denotes	glioma	D005910

LitCoin-NCBITaxon-2

Id	Subject	Object	Predicate	Lexical cue
T1	66-71	OrganismTaxon	denotes	human

LitCoin-training-merged

Id	Subject	Object	Predicate	Lexical cue	#label	cellosaurus_accession_id
T3	90-95	CellLine	denotes	U87MG		CVCL_GP63\|CVCL_0022
T1	0-5	CellLine	denotes	U87MG		CVCL_GP63\|CVCL_0022
T75302	127-133	DiseaseOrPhenotypicFeature	denotes	glioma	D005910
T16638	72-78	DiseaseOrPhenotypicFeature	denotes	cancer	D009369
T96974	66-71	OrganismTaxon	denotes	human

PubmedHPO

Id	Subject	Object	Predicate	Lexical cue
T1	127-133	HP_0009733	denotes	glioma

biored-valid-deepseek-nr-ng

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T3	79-88	CellLine	denotes	cell line
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma
T6	134-143	CellLine	denotes	cell line

biored-valid

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	118-133	DiseaseOrPhenotypicFeature	denotes	grade IV glioma

biored-valid-deepseek-nr-g

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	79-88	CellLine	denotes	cell line
T5	90-95	CellLine	denotes	U87MG
T6	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-deepseek-r-ng

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	118-133	DiseaseOrPhenotypicFeature	denotes	grade IV glioma

biored-valid-deepseek-r-g

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-gemini-nr-ng

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-gemini-r-ng

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	118-133	DiseaseOrPhenotypicFeature	denotes	grade IV glioma

biored-valid-gemini-r-g

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-gpt-nr-ng

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	118-133	DiseaseOrPhenotypicFeature	denotes	grade IV glioma

biored-valid-gpt-nr-g

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-gpt-r-g

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-gpt-r-ng

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	118-133	DiseaseOrPhenotypicFeature	denotes	grade IV glioma

biored-valid-gemini-nr-g

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T3	90-95	CellLine	denotes	U87MG
T4	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-gpt-r-m

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-gemini-r-m

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma

biored-valid-deepseek-r-m

Id	Subject	Object	Predicate	Lexical cue
T1	0-5	CellLine	denotes	U87MG
T2	66-71	OrganismTaxon	denotes	human
T3	72-78	DiseaseOrPhenotypicFeature	denotes	cancer
T4	90-95	CellLine	denotes	U87MG
T5	127-133	DiseaseOrPhenotypicFeature	denotes	glioma