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PubMed:19918264 JSONTXT

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TEST-DiseaseOrPhenotypicFeature

Id Subject Object Predicate Lexical cue #label
T1 33-48 DiseaseOrPhenotypicFeature denotes prostate cancer D011471
T2 477-492 DiseaseOrPhenotypicFeature denotes prostate cancer D011471
T3 551-566 DiseaseOrPhenotypicFeature denotes prostate cancer D011471
T4 581-584 DiseaseOrPhenotypicFeature denotes BPH DISEASE
T5 840-855 DiseaseOrPhenotypicFeature denotes prostate cancer D011471
T6 944-950 DiseaseOrPhenotypicFeature denotes cancer D009369
T7 987-990 DiseaseOrPhenotypicFeature denotes BPH DISEASE
T8 1067-1073 DiseaseOrPhenotypicFeature denotes cancer D009369
T9 1078-1081 DiseaseOrPhenotypicFeature denotes BPH DISEASE
T10 1107-1113 DiseaseOrPhenotypicFeature denotes cancer D009369
T11 1241-1256 DiseaseOrPhenotypicFeature denotes prostate cancer D011471

TEST-ChemicalEntity

Id Subject Object Predicate Lexical cue ID:
T1 375-382 ChemicalEntity denotes glycine http://purl.obolibrary.org/obo/CHEBI_57305|http://purl.obolibrary.org/obo/CHEBI_29947|http://purl.obolibrary.org/obo/CHEBI_15428
T4 384-387 ChemicalEntity denotes Gly http://purl.obolibrary.org/obo/CHEBI_15428|http://purl.obolibrary.org/obo/CHEBI_57305
T6 394-402 ChemicalEntity denotes arginine http://purl.obolibrary.org/obo/CHEBI_32696|http://purl.obolibrary.org/obo/CHEBI_29016|http://purl.obolibrary.org/obo/CHEBI_16467
T9 404-407 ChemicalEntity denotes Arg http://purl.obolibrary.org/obo/CHEBI_29952|http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_32696
T12 437-443 ChemicalEntity denotes ArgArg http://purl.obolibrary.org/obo/CHEBI_73811
T13 815-818 ChemicalEntity denotes Arg http://purl.obolibrary.org/obo/CHEBI_29952|http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_32696
T16 1179-1182 ChemicalEntity denotes Gly http://purl.obolibrary.org/obo/CHEBI_15428|http://purl.obolibrary.org/obo/CHEBI_57305
T18 1187-1190 ChemicalEntity denotes Arg http://purl.obolibrary.org/obo/CHEBI_29952|http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_32696

TEST-OrganismTaxon

Id Subject Object Predicate Lexical cue
T1 66-69 OrganismTaxon denotes men
T2 493-501 OrganismTaxon denotes patients
T3 567-575 OrganismTaxon denotes patients
T4 585-593 OrganismTaxon denotes patients
T5 1082-1090 OrganismTaxon denotes patients
T6 1269-1272 OrganismTaxon denotes men

Test-SequenceVariant

Id Subject Object Predicate Lexical cue
T1 6-15 SequenceVariant denotes Gly388Arg

Test-GeneOrGeneProduct

Id Subject Object Predicate Lexical cue
T1 0-5 GeneOrGeneProduct denotes FGFR4
T2 71-106 GeneOrGeneProduct denotes Fibroblast growth factor receptor 4
T3 108-113 GeneOrGeneProduct denotes FGFR4
T4 318-323 GeneOrGeneProduct denotes FGFR4
T5 711-716 GeneOrGeneProduct denotes FGFR4
T6 1194-1199 GeneOrGeneProduct denotes FGFR4

Test-merged-2

Id Subject Object Predicate Lexical cue #label ID:
T9214 6-15 SequenceVariant denotes Gly388Arg
T39239 375-382 ChemicalEntity denotes glycine http://purl.obolibrary.org/obo/CHEBI_57305|http://purl.obolibrary.org/obo/CHEBI_29947|http://purl.obolibrary.org/obo/CHEBI_15428
T56725 384-387 ChemicalEntity denotes Gly http://purl.obolibrary.org/obo/CHEBI_15428|http://purl.obolibrary.org/obo/CHEBI_57305
T54685 394-402 ChemicalEntity denotes arginine http://purl.obolibrary.org/obo/CHEBI_32696|http://purl.obolibrary.org/obo/CHEBI_29016|http://purl.obolibrary.org/obo/CHEBI_16467
T90774 404-407 ChemicalEntity denotes Arg http://purl.obolibrary.org/obo/CHEBI_29952|http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_32696
T12 437-443 ChemicalEntity denotes ArgArg http://purl.obolibrary.org/obo/CHEBI_73811
T13 815-818 ChemicalEntity denotes Arg http://purl.obolibrary.org/obo/CHEBI_29952|http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_32696
T16 1179-1182 ChemicalEntity denotes Gly http://purl.obolibrary.org/obo/CHEBI_15428|http://purl.obolibrary.org/obo/CHEBI_57305
T18 1187-1190 ChemicalEntity denotes Arg http://purl.obolibrary.org/obo/CHEBI_29952|http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_32696
T87333 0-5 GeneOrGeneProduct denotes FGFR4
T12949 71-106 GeneOrGeneProduct denotes Fibroblast growth factor receptor 4
T9701 108-113 GeneOrGeneProduct denotes FGFR4
T31294 318-323 GeneOrGeneProduct denotes FGFR4
T15867 711-716 GeneOrGeneProduct denotes FGFR4
T79567 1194-1199 GeneOrGeneProduct denotes FGFR4
T73825 66-69 OrganismTaxon denotes men
T72011 493-501 OrganismTaxon denotes patients
T91698 567-575 OrganismTaxon denotes patients
T3206 585-593 OrganismTaxon denotes patients
T41978 1082-1090 OrganismTaxon denotes patients
T34819 1269-1272 OrganismTaxon denotes men
T1 33-48 DiseaseOrPhenotypicFeature denotes prostate cancer D011471
T2 477-492 DiseaseOrPhenotypicFeature denotes prostate cancer D011471
T3 551-566 DiseaseOrPhenotypicFeature denotes prostate cancer D011471
T4 581-584 DiseaseOrPhenotypicFeature denotes BPH DISEASE
T5 840-855 DiseaseOrPhenotypicFeature denotes prostate cancer D011471
T6 944-950 DiseaseOrPhenotypicFeature denotes cancer D009369
T7 987-990 DiseaseOrPhenotypicFeature denotes BPH DISEASE
T8 1067-1073 DiseaseOrPhenotypicFeature denotes cancer D009369
T9 1078-1081 DiseaseOrPhenotypicFeature denotes BPH DISEASE
T10 1107-1113 DiseaseOrPhenotypicFeature denotes cancer D009369
T11 1241-1256 DiseaseOrPhenotypicFeature denotes prostate cancer D011471

DisGeNET

Id Subject Object Predicate Lexical cue
T0 318-323 gene:2264 denotes FGFR4
T1 477-492 disease:C0376358 denotes prostate cancer
T2 318-323 gene:2264 denotes FGFR4
T3 477-492 disease:C0600139 denotes prostate cancer
R1 T0 T1 associated_with FGFR4,prostate cancer
R2 T2 T3 associated_with FGFR4,prostate cancer

Allie

Id Subject Object Predicate Lexical cue
SS1_19918264_1_0 71-106 expanded denotes Fibroblast growth factor receptor 4
SS2_19918264_1_0 108-113 abbr denotes FGFR4
SS1_19918264_2_0 375-382 expanded denotes glycine
SS2_19918264_2_0 384-387 abbr denotes Gly
SS1_19918264_2_1 394-402 expanded denotes arginine
SS2_19918264_2_1 404-407 abbr denotes Arg
AE1_19918264_1_0 SS1_19918264_1_0 SS2_19918264_1_0 abbreviatedTo Fibroblast growth factor receptor 4,FGFR4
AE1_19918264_2_0 SS1_19918264_2_0 SS2_19918264_2_0 abbreviatedTo glycine,Gly
AE1_19918264_2_1 SS1_19918264_2_1 SS2_19918264_2_1 abbreviatedTo arginine,Arg

DisGeNET5_variant_disease

Id Subject Object Predicate Lexical cue
19918264-0#6#15#geners351855 6-15 geners351855 denotes Gly388Arg
19918264-0#33#48#diseaseC0376358 33-48 diseaseC0376358 denotes prostate cancer
19918264-0#33#48#diseaseC0600139 33-48 diseaseC0600139 denotes prostate cancer
6#15#geners35185533#48#diseaseC0376358 19918264-0#6#15#geners351855 19918264-0#33#48#diseaseC0376358 associated_with Gly388Arg,prostate cancer
6#15#geners35185533#48#diseaseC0600139 19918264-0#6#15#geners351855 19918264-0#33#48#diseaseC0600139 associated_with Gly388Arg,prostate cancer

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
19918264-0#0#5#gene2264 0-5 gene2264 denotes FGFR4
19918264-0#33#48#diseaseC0376358 33-48 diseaseC0376358 denotes prostate cancer
19918264-0#33#48#diseaseC0600139 33-48 diseaseC0600139 denotes prostate cancer
0#5#gene226433#48#diseaseC0376358 19918264-0#0#5#gene2264 19918264-0#33#48#diseaseC0376358 associated_with FGFR4,prostate cancer
0#5#gene226433#48#diseaseC0600139 19918264-0#0#5#gene2264 19918264-0#33#48#diseaseC0600139 associated_with FGFR4,prostate cancer

tmVarCorpus

Id Subject Object Predicate Lexical cue
T1 6-15 ProteinMutation:p|SUB|G|388|R denotes Gly388Arg
T2 1179-1190 ProteinMutation:p|SUB|G|388|R denotes Gly(388)Arg