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PubMed:19895223 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-73 Sentence denotes GUCY2C reverse transcriptase PCR to stage pN0 colorectal cancer patients.
TextSentencer_T2 74-246 Sentence denotes The most important prognostic marker of survival and predictive marker of response to adjuvant chemotherapy in colon cancer patients is tumor cells in regional lymph nodes.
TextSentencer_T3 247-490 Sentence denotes Despite their importance, standard techniques to assess nodal metastases remain imperfect, as approximately 30% of patients with histology-negative lymph nodes (pN0) die of recurrent disease, reflecting occult metastases that escape detection.
TextSentencer_T4 491-638 Sentence denotes These observations highlight the clinical need for novel, accurate approaches to detect occult lymph node metastases in patients with colon cancer.
TextSentencer_T5 639-787 Sentence denotes GUCY2C is a biomarker whose expression normally is restricted to intestinal cells, but is near universally overexpressed by colorectal cancer cells.
TextSentencer_T6 788-1037 Sentence denotes Recently, a prospective, multicenter, blinded clinical trial demonstrated for the first time that the prognostic utility of GUCY2C quantitative reverse transcriptase (qRT)-PCR to detect occult lymph node metastases in pN0 colorectal cancer patients.
TextSentencer_T7 1038-1206 Sentence denotes Molecular staging revealed that approximately 13% of pN0 patients were free of tumor cells, while approximately 87% had GUCY2C results that suggested occult metastases.
TextSentencer_T8 1207-1340 Sentence denotes The presence of occult lymph node metastases was the strongest independent predictor of time to recurrence and disease-free survival.
TextSentencer_T9 1341-1502 Sentence denotes These observations establish the utility of molecular detection of occult lymph node metastases for estimating prognostic risk in pN0 colorectal cancer patients.
TextSentencer_T10 1503-1857 Sentence denotes Advancing this molecular diagnostic into staging paradigms in clinical laboratories will require validation in independent patient populations, definition of the relationship between the quantity of occult tumor metastases and risk, and determination of the utility of GUCY2C qRT-PCR to identify pN0 patients who might benefit from adjuvant chemotherapy.
T1 0-73 Sentence denotes GUCY2C reverse transcriptase PCR to stage pN0 colorectal cancer patients.
T2 74-246 Sentence denotes The most important prognostic marker of survival and predictive marker of response to adjuvant chemotherapy in colon cancer patients is tumor cells in regional lymph nodes.
T3 247-490 Sentence denotes Despite their importance, standard techniques to assess nodal metastases remain imperfect, as approximately 30% of patients with histology-negative lymph nodes (pN0) die of recurrent disease, reflecting occult metastases that escape detection.
T4 491-638 Sentence denotes These observations highlight the clinical need for novel, accurate approaches to detect occult lymph node metastases in patients with colon cancer.
T5 639-787 Sentence denotes GUCY2C is a biomarker whose expression normally is restricted to intestinal cells, but is near universally overexpressed by colorectal cancer cells.
T6 788-1037 Sentence denotes Recently, a prospective, multicenter, blinded clinical trial demonstrated for the first time that the prognostic utility of GUCY2C quantitative reverse transcriptase (qRT)-PCR to detect occult lymph node metastases in pN0 colorectal cancer patients.
T7 1038-1206 Sentence denotes Molecular staging revealed that approximately 13% of pN0 patients were free of tumor cells, while approximately 87% had GUCY2C results that suggested occult metastases.
T8 1207-1340 Sentence denotes The presence of occult lymph node metastases was the strongest independent predictor of time to recurrence and disease-free survival.
T9 1341-1502 Sentence denotes These observations establish the utility of molecular detection of occult lymph node metastases for estimating prognostic risk in pN0 colorectal cancer patients.
T10 1503-1857 Sentence denotes Advancing this molecular diagnostic into staging paradigms in clinical laboratories will require validation in independent patient populations, definition of the relationship between the quantity of occult tumor metastases and risk, and determination of the utility of GUCY2C qRT-PCR to identify pN0 patients who might benefit from adjuvant chemotherapy.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 1158-1164 gene:2984 denotes GUCY2C
T1 1195-1205 disease:C0027627 denotes metastases
T2 1158-1164 gene:2984 denotes GUCY2C
T3 1195-1205 disease:C2939419 denotes metastases
R1 T0 T1 associated_with GUCY2C,metastases
R2 T2 T3 associated_with GUCY2C,metastases

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
19895223-0#0#6#gene2984 912-918 gene2984 denotes GUCY2C
19895223-0#46#63#diseaseC0009402 1475-1492 diseaseC0009402 denotes colorectal cancer
19895223-0#46#63#diseaseC1527249 1475-1492 diseaseC1527249 denotes colorectal cancer
19895223-5#124#130#gene2984 912-918 gene2984 denotes GUCY2C
19895223-5#193#214#diseaseC0686619 981-1002 diseaseC0686619 denotes lymph node metastases
19895223-9#269#275#gene2984 1772-1778 gene2984 denotes GUCY2C
19895223-9#212#222#diseaseC0027627 1715-1725 diseaseC0027627 denotes metastases
0#6#gene298446#63#diseaseC0009402 19895223-0#0#6#gene2984 19895223-0#46#63#diseaseC0009402 associated_with GUCY2C,colorectal cancer
0#6#gene298446#63#diseaseC1527249 19895223-0#0#6#gene2984 19895223-0#46#63#diseaseC1527249 associated_with GUCY2C,colorectal cancer
124#130#gene2984193#214#diseaseC0686619 19895223-5#124#130#gene2984 19895223-5#193#214#diseaseC0686619 associated_with GUCY2C,lymph node metastases
269#275#gene2984212#222#diseaseC0027627 19895223-9#269#275#gene2984 19895223-9#212#222#diseaseC0027627 associated_with GUCY2C,metastases

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 704-714 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
PD-UBERON-AE-B_T2 185-190 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
PD-UBERON-AE-B_T3 625-630 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
PD-UBERON-AE-B_T4 234-239 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T5 395-400 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T6 586-591 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T7 981-986 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T8 1230-1235 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T9 1415-1420 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T10 234-245 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
PD-UBERON-AE-B_T11 395-406 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
PD-UBERON-AE-B_T12 586-596 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
PD-UBERON-AE-B_T13 981-991 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
PD-UBERON-AE-B_T14 1230-1240 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
PD-UBERON-AE-B_T15 1415-1425 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node

DisGeNet-2017-sample

Id Subject Object Predicate Lexical cue
T858 1772-1778 gene:2984 denotes GUCY2C
T859 1715-1725 disease:C0027627 denotes metastases
R1 T858 T859 associated_with GUCY2C,metastases

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 185-190 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
PD-UBERON-AE-B_T2 625-630 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
PD-UBERON-AE-B_T3 234-239 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T4 395-400 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T5 586-591 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T6 981-986 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T7 1230-1235 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T8 1415-1420 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
PD-UBERON-AE-B_T9 234-245 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
PD-UBERON-AE-B_T10 395-406 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
PD-UBERON-AE-B_T11 586-596 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
PD-UBERON-AE-B_T12 981-991 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
PD-UBERON-AE-B_T13 1230-1240 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
PD-UBERON-AE-B_T14 1415-1425 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
PD-UBERON-AE-B_T15 704-714 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal