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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 26-43 cell_line denotes B-cell population
T2 78-119 DNA denotes human interferon regulatory factor 1 gene
T3 140-151 protein denotes Interferons
T4 153-157 protein denotes IFNs
T5 182-200 protein denotes antiviral proteins
T6 271-275 protein denotes IFNs
T7 302-308 cell_type denotes normal
T8 313-335 cell_type denotes transformed cell types
T9 351-365 protein denotes nuclear factor
T10 367-372 protein denotes IRF-1
T11 374-404 protein denotes interferon regulatory factor 1
T12 422-432 DNA denotes type I IFN
T13 442-470 DNA denotes IFN-inducible gene promoters
T14 509-514 protein denotes IRF-1
T15 538-541 protein denotes IFN
T16 601-611 DNA denotes IRF-1 gene
T17 630-633 protein denotes IFN
T18 747-763 DNA denotes human IRF-1 gene
T19 778-819 DNA denotes human immunoglobulin heavy-chain enhancer
T20 924-937 cell_type denotes B lymphocytes
T21 939-946 cell_type denotes B cells
T22 977-994 cell_type denotes bone marrow cells
T23 1101-1118 cell_type denotes B-cell population
T24 1129-1157 cell_line denotes transgenic bone marrow cells
T25 1176-1213 cell_line denotes bone marrow-derived stromal cell line
T26 1234-1240 cell_type denotes B-cell

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-139 Sentence denotes Specific depletion of the B-cell population induced by aberrant expression of human interferon regulatory factor 1 gene in transgenic mice.
S2 140-261 Sentence denotes Interferons (IFNs) are well known both as antiviral proteins and as potent regulators of cell growth and differentiation.
S3 262-336 Sentence denotes In fact, IFNs inhibit growth of various normal and transformed cell types.
S4 337-498 Sentence denotes Previously, a nuclear factor, IRF-1 (interferon regulatory factor 1), which binds to type I IFN and some IFN-inducible gene promoters, was identified and cloned.
S5 499-689 Sentence denotes Since the IRF-1 gene is both virus and IFN inducible, an intriguing issue is raised as to whether the IRF-1 gene is functioning in IFN-mediated regulation of cell growth and differentiation.
S6 690-820 Sentence denotes In this study, we generated transgenic mice carrying the human IRF-1 gene linked to the human immunoglobulin heavy-chain enhancer.
S7 821-948 Sentence denotes In the transgenic mice, all the lymphoid tissues examined showed a dramatic reduction in the number of B lymphocytes (B cells).
S8 949-1119 Sentence denotes Preparation and analysis of bone marrow cells from the chimeric mice indicated that the bone marrow is the effective site for specific depletion of the B-cell population.
S9 1120-1260 Sentence denotes In fact, transgenic bone marrow cells cocultured with a bone marrow-derived stromal cell line revealed an altered B-cell maturation pattern.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 22-43 NP denotes the B-cell population
C1 0-43 NP denotes Specific depletion of the B-cell population
C4 78-114 NP denotes human interferon regulatory factor 1
C3 78-119 NP denotes human interferon regulatory factor 1 gene
C5 123-138 NP denotes transgenic mice
C6 140-158 NP denotes Interferons (IFNs)
C7 271-275 NP denotes IFNs
C8 349-365 NP denotes a nuclear factor
C9 367-405 NP denotes IRF-1 (interferon regulatory factor 1)
C10 407-412 NP denotes which
C11 422-432 NP denotes type I IFN
C12 505-519 NP denotes the IRF-1 gene
C13 597-611 NP denotes the IRF-1 gene
C15 743-763 NP denotes the human IRF-1 gene
C14 718-819 NP denotes transgenic mice carrying the human IRF-1 gene linked to the human immunoglobulin heavy-chain enhancer
C16 824-843 NP denotes the transgenic mice
C18 977-988 NP denotes bone marrow
C17 977-1017 NP denotes bone marrow cells from the chimeric mice
C19 1033-1048 NP denotes the bone marrow
C21 1097-1118 NP denotes the B-cell population
C20 1075-1118 NP denotes specific depletion of the B-cell population
C22 1129-1157 NP denotes transgenic bone marrow cells
R1 C7 C6 coref-ident IFNs,Interferons (IFNs)
R2 C8 C9 coref-appos a nuclear factor,IRF-1 (interferon regulatory factor 1)
R3 C9 C4 coref-ident IRF-1 (interferon regulatory factor 1),human interferon regulatory factor 1
R4 C10 C9 coref-relat which,IRF-1 (interferon regulatory factor 1)
R5 C11 C9 coref-other type I IFN,IRF-1 (interferon regulatory factor 1)
R6 C12 C3 coref-ident the IRF-1 gene,human interferon regulatory factor 1 gene
R7 C13 C12 coref-ident the IRF-1 gene,the IRF-1 gene
R8 C15 C13 coref-ident the human IRF-1 gene,the IRF-1 gene
R9 C14 C5 coref-other transgenic mice carrying the human IRF-1 gene linked to the human immunoglobulin heavy-chain enhancer,transgenic mice
R10 C16 C14 coref-ident the transgenic mice,transgenic mice carrying the human IRF-1 gene linked to the human immunoglobulin heavy-chain enhancer
R11 C19 C18 coref-ident the bone marrow,bone marrow
R12 C21 C2 coref-ident the B-cell population,the B-cell population
R13 C20 C1 coref-ident specific depletion of the B-cell population,Specific depletion of the B-cell population
R14 C22 C17 coref-other transgenic bone marrow cells,bone marrow cells from the chimeric mice

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 26-43 cell_line denotes B-cell population
T2 55-74 other_name denotes aberrant expression
T3 78-114 protein_molecule denotes human interferon regulatory factor 1
T4 123-138 multi_cell denotes transgenic mice
T5 140-151 protein_family_or_group denotes Interferons
T6 153-157 protein_family_or_group denotes IFNs
T7 182-200 protein_family_or_group denotes antiviral proteins
T8 215-225 other_name denotes regulators
T9 229-240 other_name denotes cell growth
T10 245-260 other_name denotes differentiation
T11 271-275 protein_family_or_group denotes IFNs
T12 302-308 cell_type denotes normal
T13 313-335 cell_type denotes transformed cell types
T14 351-365 protein_family_or_group denotes nuclear factor
T15 367-372 protein_molecule denotes IRF-1
T16 374-404 protein_molecule denotes interferon regulatory factor 1
T17 422-432 DNA_domain_or_region denotes type I IFN
T18 442-445 protein_family_or_group denotes IFN
T19 509-514 protein_molecule denotes IRF-1
T20 538-541 protein_family_or_group denotes IFN
T21 601-606 protein_molecule denotes IRF-1
T22 630-633 protein_family_or_group denotes IFN
T23 657-668 other_name denotes cell growth
T24 673-688 other_name denotes differentiation
T25 718-733 multi_cell denotes transgenic mice
T26 747-752 DNA_domain_or_region denotes human
T27 753-758 protein_molecule denotes IRF-1
T28 778-810 protein_subunit denotes human immunoglobulin heavy-chain
T29 828-843 multi_cell denotes transgenic mice
T30 853-869 tissue denotes lymphoid tissues
T31 924-937 cell_type denotes B lymphocytes
T32 939-946 cell_type denotes B cells
T33 977-994 cell_type denotes bone marrow cells
T34 1037-1048 tissue denotes bone marrow
T35 1101-1118 cell_type denotes B-cell population
T36 1129-1157 cell_line denotes transgenic bone marrow cells
T37 1176-1213 cell_line denotes bone marrow-derived stromal cell line
T38 1234-1240 cell_type denotes B-cell