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PubMed:1987353 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 4-47 DNA denotes NF kappa B independent cis-acting sequences
T2 51-60 DNA denotes HIV-1 LTR
T3 147-167 DNA denotes long terminal repeat
T4 229-236 cell_type denotes T cells
T5 276-285 DNA denotes HIV-1 LTR
T6 409-415 protein denotes NFAT-1
T7 419-429 protein denotes NF kappa B
T8 443-446 DNA denotes LTR
T9 538-565 protein denotes tumor necrosis factor alpha
T10 580-586 protein denotes NFAT-1
T11 590-614 DNA denotes NF kappa B binding sites
T12 748-778 DNA denotes NF kappa B and NFAT-1 deletion
T13 865-871 protein denotes NFAT-1
T14 913-925 cell_line denotes Jurkat cells
T15 947-957 protein denotes NF kappa B
T16 974-980 protein denotes NFAT-1

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-93 Sentence denotes The NF kappa B independent cis-acting sequences in HIV-1 LTR responsive to T-cell activation.
S2 94-237 Sentence denotes The rate of transcription initiation directed by the long terminal repeat (LTR) of HIV-1 increases in response to mitogenic stimuli of T cells.
S3 238-430 Sentence denotes Here we show that the response of the HIV-1 LTR may be governed by two independent sequences located 5' to the site of transcription initiation sequences that bind either NFAT-1 or NF kappa B.
S4 431-708 Sentence denotes The rate of LTR-directed gene expression increased in response to treatment with either a phorbol ester or tumor necrosis factor alpha if either the NFAT-1 or NF kappa B binding sites were deleted, but failed to respond to these mitogenic stimuli if both sequences were absent.
S5 709-926 Sentence denotes The HIV-1 mutant virus containing both NF kappa B and NFAT-1 deletion was able to replicate although at a much decreased growth rate, while the deletion of NFAT-1 alone increased the viral growth rate in Jurkat cells.
S6 927-1040 Sentence denotes Neither deletion of NF kappa B nor deletion of NFAT-1 decreased activation of viral replication by phorbol ester.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 4-14 NP denotes NF kappa B
C2 51-60 NP denotes HIV-1 LTR
C3 143-182 NP denotes the long terminal repeat (LTR) of HIV-1
C4 208-236 NP denotes mitogenic stimuli of T cells
C5 272-285 NP denotes the HIV-1 LTR
C7 357-391 NP denotes transcription initiation sequences
C8 392-396 NP denotes that
C9 409-415 NP denotes NFAT-1
C10 419-429 NP denotes NF kappa B
C6 305-429 NP denotes two independent sequences located 5' to the site of transcription initiation sequences that bind either NFAT-1 or NF kappa B
C11 521-534 NP denotes phorbol ester
C12 580-586 NP denotes NFAT-1
C13 590-600 NP denotes NF kappa B
C14 654-677 NP denotes these mitogenic stimuli
C15 681-695 NP denotes both sequences
C16 748-758 NP denotes NF kappa B
C17 763-778 NP denotes NFAT-1 deletion
C19 865-871 NP denotes NFAT-1
C18 849-871 NP denotes the deletion of NFAT-1
C20 947-957 NP denotes NF kappa B
C22 974-980 NP denotes NFAT-1
C21 962-980 NP denotes deletion of NFAT-1
C23 1026-1039 NP denotes phorbol ester
R1 C3 C2 coref-other the long terminal repeat (LTR) of HIV-1,HIV-1 LTR
R2 C5 C3 coref-ident the HIV-1 LTR,the long terminal repeat (LTR) of HIV-1
R3 C8 C7 coref-relat that,transcription initiation sequences
R4 C10 C1 coref-ident NF kappa B,NF kappa B
R5 C12 C9 coref-ident NFAT-1,NFAT-1
R6 C13 C10 coref-ident NF kappa B,NF kappa B
R7 C14 C4 coref-other these mitogenic stimuli,mitogenic stimuli of T cells
R8 C15 C6 coref-ident both sequences,two independent sequences located 5' to the site of transcription initiation sequences that bind either NFAT-1 or NF kappa B
R9 C16 C13 coref-ident NF kappa B,NF kappa B
R10 C19 C9 coref-ident NFAT-1,NFAT-1
R11 C18 C17 coref-other the deletion of NFAT-1,NFAT-1 deletion
R12 C20 C16 coref-ident NF kappa B,NF kappa B
R13 C22 C9 coref-ident NFAT-1,NFAT-1
R14 C21 C18 coref-other deletion of NFAT-1,the deletion of NFAT-1
R15 C23 C11 coref-ident phorbol ester,phorbol ester

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 4-47 DNA_domain_or_region denotes NF kappa B independent cis-acting sequences
T2 51-56 virus denotes HIV-1
T3 75-92 other_name denotes T-cell activation
T4 106-130 other_name denotes transcription initiation
T5 147-167 DNA_domain_or_region denotes long terminal repeat
T6 177-182 virus denotes HIV-1
T7 208-225 other_name denotes mitogenic stimuli
T8 229-236 cell_type denotes T cells
T9 276-285 DNA_domain_or_region denotes HIV-1 LTR
T10 357-391 DNA_substructure denotes transcription initiation sequences
T11 409-415 protein_molecule denotes NFAT-1
T12 419-429 protein_molecule denotes NF kappa B
T13 443-446 DNA_domain_or_region denotes LTR
T14 521-534 other_organic_compound denotes phorbol ester
T15 538-565 protein_molecule denotes tumor necrosis factor alpha
T16 580-586 DNA_domain_or_region denotes NFAT-1
T17 590-600 protein_molecule denotes NF kappa B
T18 713-718 virus denotes HIV-1
T19 748-758 DNA_domain_or_region denotes NF kappa B
T20 763-769 protein_molecule denotes NFAT-1
T21 820-841 other_name denotes decreased growth rate
T22 865-871 protein_molecule denotes NFAT-1
T23 892-909 other_name denotes viral growth rate
T24 913-925 cell_line denotes Jurkat cells
T25 947-957 protein_molecule denotes NF kappa B
T26 974-980 protein_molecule denotes NFAT-1
T27 991-1001 other_name denotes activation
T28 1005-1022 other_name denotes viral replication
T29 1026-1039 other_organic_compound denotes phorbol ester