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LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 46-49 OrganismTaxon denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T6 201-204 OrganismTaxon denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T11 342-345 OrganismTaxon denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T16 577-580 OrganismTaxon denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T21 684-687 OrganismTaxon denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T26 1065-1068 OrganismTaxon denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T31 1301-1304 OrganismTaxon denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T36 1641-1644 OrganismTaxon denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Smoking of crack cocaine as a risk factor for HIV infection among people who use injection drugs.
T2 98-109 Sentence denotes BACKGROUND:
T3 110-215 Sentence denotes Little is known about the possible role that smoking crack cocaine has on the incidence of HIV infection.
T4 216-356 Sentence denotes Given the increasing use of crack cocaine, we sought to examine whether use of this illicit drug has become a risk factor for HIV infection.
T5 357-365 Sentence denotes METHODS:
T6 366-650 Sentence denotes We included data from people participating in the Vancouver Injection Drug Users Study who reported injecting illicit drugs at least once in the month before enrolment, lived in the greater Vancouver area, were HIV-negative at enrolment and completed at least 1 follow-up study visit.
T7 651-840 Sentence denotes To determine whether the risk of HIV seroconversion among daily smokers of crack cocaine changed over time, we used Cox proportional hazards regression and divided the study into 3 periods:
T8 841-857 Sentence denotes May 1, 1996-Nov.
T9 858-883 Sentence denotes 30, 1999 (period 1), Dec.
T10 884-896 Sentence denotes 1, 1999-Nov.
T11 897-926 Sentence denotes 30, 2002 (period 2), and Dec.
T12 927-939 Sentence denotes 1, 2002-Dec.
T13 940-960 Sentence denotes 30, 2005 (period 3).
T14 961-969 Sentence denotes RESULTS:
T15 970-1041 Sentence denotes Overall, 1048 eligible injection drug users were included in our study.
T16 1042-1096 Sentence denotes Of these, 137 acquired HIV infection during follow-up.
T17 1097-1231 Sentence denotes The mean proportion of participants who reported daily smoking of crack cocaine increased from 11.6% in period 1 to 39.7% in period 3.
T18 1232-1552 Sentence denotes After adjusting for potential confounders, we found that the risk of HIV seroconversion among participants who were daily smokers of crack cocaine increased over time (period 1: hazard ratio [HR] 1.03, 95% confidence interval [CI] 0.57-1.85; period 2: HR 1.68, 95% CI 1.01-2.80; and period 3: HR 2.74, 95% CI 1.06-7.11).
T19 1553-1568 Sentence denotes INTERPRETATION:
T20 1569-1703 Sentence denotes Smoking of crack cocaine was found to be an independent risk factor for HIV seroconversion among people who were injection drug users.
T21 1704-1831 Sentence denotes This finding points to the urgent need for evidence-based public health initiatives targeted at people who smoke crack cocaine.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
6644 11-24 ChemicalEntity denotes crack cocaine MESH:D016578
6645 46-59 DiseaseOrPhenotypicFeature denotes HIV infection MESH:D015658
6646 163-176 ChemicalEntity denotes crack cocaine MESH:D016578
6647 201-214 DiseaseOrPhenotypicFeature denotes HIV infection MESH:D015658
6648 244-257 ChemicalEntity denotes crack cocaine MESH:D016578
6649 342-355 DiseaseOrPhenotypicFeature denotes HIV infection MESH:D015658
6650 577-580 DiseaseOrPhenotypicFeature denotes HIV MESH:D015658
6651 684-702 DiseaseOrPhenotypicFeature denotes HIV seroconversion MESH:D006679
6652 726-739 ChemicalEntity denotes crack cocaine MESH:D016578
6653 1065-1078 DiseaseOrPhenotypicFeature denotes HIV infection MESH:D015658
6654 1163-1176 ChemicalEntity denotes crack cocaine MESH:D016578
6655 1301-1319 DiseaseOrPhenotypicFeature denotes HIV seroconversion MESH:D006679
6656 1365-1378 ChemicalEntity denotes crack cocaine MESH:D016578
6657 1580-1593 ChemicalEntity denotes crack cocaine MESH:D016578
6658 1641-1659 DiseaseOrPhenotypicFeature denotes HIV seroconversion MESH:D006679
6659 1817-1830 ChemicalEntity denotes crack cocaine MESH:D016578

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 607-616 DiseaseOrPhenotypicFeature denotes completed 0700063
T2 1056-1064 DiseaseOrPhenotypicFeature denotes acquired 0021141

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 11-16 GeneOrGeneProduct denotes crack
T2 35-41 GeneOrGeneProduct denotes factor
T3 110-116 GeneOrGeneProduct denotes Little
T4 163-168 GeneOrGeneProduct denotes crack
T5 244-249 GeneOrGeneProduct denotes crack
T6 331-337 GeneOrGeneProduct denotes factor
T7 357-364 GeneOrGeneProduct denotes METHODS
T8 566-570 GeneOrGeneProduct denotes area
T9 654-663 GeneOrGeneProduct denotes determine
T10 726-731 GeneOrGeneProduct denotes crack
T11 753-757 GeneOrGeneProduct denotes time
T12 832-839 GeneOrGeneProduct denotes periods
T13 841-846 GeneOrGeneProduct denotes May 1
T14 868-876 GeneOrGeneProduct denotes period 1
T15 879-885 GeneOrGeneProduct denotes Dec. 1
T16 907-915 GeneOrGeneProduct denotes period 2
T17 922-928 GeneOrGeneProduct denotes Dec. 1
T18 950-958 GeneOrGeneProduct denotes period 3
T19 979-983 GeneOrGeneProduct denotes 1048
T20 1163-1168 GeneOrGeneProduct denotes crack
T21 1201-1209 GeneOrGeneProduct denotes period 1
T22 1222-1230 GeneOrGeneProduct denotes period 3
T23 1365-1370 GeneOrGeneProduct denotes crack
T24 1394-1398 GeneOrGeneProduct denotes time
T25 1400-1408 GeneOrGeneProduct denotes period 1
T26 1474-1482 GeneOrGeneProduct denotes period 2
T27 1515-1523 GeneOrGeneProduct denotes period 3
T28 1580-1585 GeneOrGeneProduct denotes crack
T29 1630-1636 GeneOrGeneProduct denotes factor
T30 1709-1716 GeneOrGeneProduct denotes finding
T31 1717-1723 GeneOrGeneProduct denotes points
T32 1756-1761 GeneOrGeneProduct denotes based
T33 1776-1787 GeneOrGeneProduct denotes initiatives
T34 1817-1822 GeneOrGeneProduct denotes crack

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 11-16 GeneOrGeneProduct denotes crack
T2 35-41 GeneOrGeneProduct denotes factor
T3 110-116 GeneOrGeneProduct denotes Little
T4 163-168 GeneOrGeneProduct denotes crack
T5 244-249 GeneOrGeneProduct denotes crack
T6 331-337 GeneOrGeneProduct denotes factor
T7 566-570 GeneOrGeneProduct denotes area
T8 726-731 GeneOrGeneProduct denotes crack
T9 868-876 GeneOrGeneProduct denotes period 1
T10 879-885 GeneOrGeneProduct denotes Dec. 1
T11 907-915 GeneOrGeneProduct denotes period 2
T12 922-928 GeneOrGeneProduct denotes Dec. 1
T13 950-958 GeneOrGeneProduct denotes period 3
T14 979-983 GeneOrGeneProduct denotes 1048
T15 1163-1168 GeneOrGeneProduct denotes crack
T16 1201-1209 GeneOrGeneProduct denotes period 1
T17 1222-1230 GeneOrGeneProduct denotes period 3
T18 1365-1370 GeneOrGeneProduct denotes crack
T19 1400-1408 GeneOrGeneProduct denotes period 1
T20 1474-1482 GeneOrGeneProduct denotes period 2
T21 1515-1523 GeneOrGeneProduct denotes period 3
T22 1580-1585 GeneOrGeneProduct denotes crack
T23 1630-1636 GeneOrGeneProduct denotes factor
T24 1817-1822 GeneOrGeneProduct denotes crack

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 46-59 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T2 201-214 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T3 342-355 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T4 684-702 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T5 1065-1078 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T6 1301-1319 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T7 1641-1659 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 868-874 GeneOrGeneProduct denotes period
T2 907-913 GeneOrGeneProduct denotes period
T3 950-956 GeneOrGeneProduct denotes period
T4 979-983 GeneOrGeneProduct denotes 1048
T5 1201-1207 GeneOrGeneProduct denotes period
T6 1222-1228 GeneOrGeneProduct denotes period
T7 1400-1406 GeneOrGeneProduct denotes period
T8 1474-1480 GeneOrGeneProduct denotes period
T9 1515-1521 GeneOrGeneProduct denotes period

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 46-59 DiseaseOrPhenotypicFeature denotes HIV infection 0005109
T2 201-214 DiseaseOrPhenotypicFeature denotes HIV infection 0005109
T3 342-355 DiseaseOrPhenotypicFeature denotes HIV infection 0005109
T4 1065-1078 DiseaseOrPhenotypicFeature denotes HIV infection 0005109

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 46-59 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T2 201-214 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T3 342-355 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T4 577-580 DiseaseOrPhenotypicFeature denotes HIV DISEASE
T5 684-702 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T6 1065-1078 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T7 1301-1319 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T8 1641-1659 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 46-59 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T2 201-214 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T3 342-355 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T4 684-702 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T5 1065-1078 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T6 1301-1319 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T7 1641-1659 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 46-49 OrganismTaxon denotes HIV
T2 201-204 OrganismTaxon denotes HIV
T3 342-345 OrganismTaxon denotes HIV
T4 577-580 OrganismTaxon denotes HIV
T5 684-687 OrganismTaxon denotes HIV
T6 1065-1068 OrganismTaxon denotes HIV
T7 1301-1304 OrganismTaxon denotes HIV
T8 1641-1644 OrganismTaxon denotes HIV

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 11-24 ChemicalEntity denotes crack cocaine D016578
T2 163-176 ChemicalEntity denotes crack cocaine D016578
T3 244-257 ChemicalEntity denotes crack cocaine D016578
T4 300-312 ChemicalEntity denotes illicit drug D013287
T5 476-489 ChemicalEntity denotes illicit drugs D013287
T6 726-739 ChemicalEntity denotes crack cocaine D016578
T7 879-882 ChemicalEntity denotes Dec http://purl.obolibrary.org/obo/CHEBI_23580|http://purl.obolibrary.org/obo/CHEBI_23574
T9 922-925 ChemicalEntity denotes Dec http://purl.obolibrary.org/obo/CHEBI_23580|http://purl.obolibrary.org/obo/CHEBI_23574
T11 935-938 ChemicalEntity denotes Dec http://purl.obolibrary.org/obo/CHEBI_23580|http://purl.obolibrary.org/obo/CHEBI_23574
T13 1163-1176 ChemicalEntity denotes crack cocaine D016578
T14 1365-1378 ChemicalEntity denotes crack cocaine D016578
T15 1580-1593 ChemicalEntity denotes crack cocaine D016578
T16 1811-1816 ChemicalEntity denotes smoke D012906
T17 1817-1830 ChemicalEntity denotes crack cocaine D016578

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T17 1817-1830 ChemicalEntity denotes crack cocaine D016578
T16 1811-1816 ChemicalEntity denotes smoke D012906
T15 1580-1593 ChemicalEntity denotes crack cocaine D016578
T14 1365-1378 ChemicalEntity denotes crack cocaine D016578
T13 1163-1176 ChemicalEntity denotes crack cocaine D016578
T11 935-938 ChemicalEntity denotes Dec http://purl.obolibrary.org/obo/CHEBI_23574|http://purl.obolibrary.org/obo/CHEBI_23580
T9 922-925 ChemicalEntity denotes Dec http://purl.obolibrary.org/obo/CHEBI_23574|http://purl.obolibrary.org/obo/CHEBI_23580
T7 879-882 ChemicalEntity denotes Dec http://purl.obolibrary.org/obo/CHEBI_23574|http://purl.obolibrary.org/obo/CHEBI_23580
T6 726-739 ChemicalEntity denotes crack cocaine D016578
T5 476-489 ChemicalEntity denotes illicit drugs D013287
T4 300-312 ChemicalEntity denotes illicit drug D013287
T3 244-257 ChemicalEntity denotes crack cocaine D016578
T2 163-176 ChemicalEntity denotes crack cocaine D016578
T1 11-24 ChemicalEntity denotes crack cocaine D016578
T69445 1515-1521 GeneOrGeneProduct denotes period
T8 1474-1480 GeneOrGeneProduct denotes period
T20290 1400-1406 GeneOrGeneProduct denotes period
T96650 1222-1228 GeneOrGeneProduct denotes period
T3384 1201-1207 GeneOrGeneProduct denotes period
T27956 979-983 GeneOrGeneProduct denotes 1048
T68176 950-956 GeneOrGeneProduct denotes period
T73742 907-913 GeneOrGeneProduct denotes period
T59145 868-874 GeneOrGeneProduct denotes period
T73967 1641-1659 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T52288 1301-1319 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T99285 1065-1078 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T1870 684-702 DiseaseOrPhenotypicFeature denotes HIV seroconversion D006679
T71704 342-355 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T96953 201-214 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T46621 46-59 DiseaseOrPhenotypicFeature denotes HIV infection D015658
T62741 1641-1644 OrganismTaxon denotes HIV
T81771 1301-1304 OrganismTaxon denotes HIV
T85207 1065-1068 OrganismTaxon denotes HIV
T92122 684-687 OrganismTaxon denotes HIV
T19624 577-580 OrganismTaxon denotes HIV
T30354 342-345 OrganismTaxon denotes HIV
T73288 201-204 OrganismTaxon denotes HIV
T7313 46-49 OrganismTaxon denotes HIV