PubMed:19757027 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/19757027","sourcedb":"PubMed","sourceid":"19757027","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/19757027","text":"Eryptosis in hereditary spherocytosis and thalassemia: role of glycoconjugates.\nThe present work is aimed to study the mechanism of faster erythrocyte clearance in hereditary spherocytosis (HS), a heterogeneous disorders characterized by alterations in the proteins of the red cell membrane skeleton along with different kinds of thalassemia. The maximum exposure of phosphatidylserine (PS) is found in HS compared to those in both α- and β-thalassemia. Interestingly, in HS more PS exposed cells were found in younger erythrocytes compared to normal and the thalassemics where aged cells showed higher loss of PS asymmetry. Loss of sialic acid and GlcNAc bearing glycoconjugates, presumably the glycophorins, was also found upon aging. The loss of PS asymmetry together with the cell surface glycoproteins mediated by membrane vesiculation, seemed to play key role in early clearance of erythrocytes from circulation following a mechanism similar to HbEβ-thalassemia.","tracks":[{"project":"Allie","denotations":[{"id":"SS1_19757027_1_0","span":{"begin":164,"end":188},"obj":"expanded"},{"id":"SS2_19757027_1_0","span":{"begin":190,"end":192},"obj":"abbr"},{"id":"SS1_19757027_2_0","span":{"begin":367,"end":385},"obj":"expanded"},{"id":"SS2_19757027_2_0","span":{"begin":387,"end":389},"obj":"abbr"}],"relations":[{"id":"AE1_19757027_1_0","pred":"abbreviatedTo","subj":"SS1_19757027_1_0","obj":"SS2_19757027_1_0"},{"id":"AE1_19757027_2_0","pred":"abbreviatedTo","subj":"SS1_19757027_2_0","obj":"SS2_19757027_2_0"}],"attributes":[{"subj":"SS1_19757027_1_0","pred":"source","obj":"Allie"},{"subj":"SS2_19757027_1_0","pred":"source","obj":"Allie"},{"subj":"SS1_19757027_2_0","pred":"source","obj":"Allie"},{"subj":"SS2_19757027_2_0","pred":"source","obj":"Allie"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":79},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":80,"end":342},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":343,"end":453},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":454,"end":624},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":625,"end":736},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":737,"end":968},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":79},"obj":"Sentence"},{"id":"T2","span":{"begin":80,"end":342},"obj":"Sentence"},{"id":"T3","span":{"begin":343,"end":453},"obj":"Sentence"},{"id":"T4","span":{"begin":454,"end":624},"obj":"Sentence"},{"id":"T5","span":{"begin":625,"end":736},"obj":"Sentence"},{"id":"T6","span":{"begin":737,"end":968},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"}]},{"project":"NGLY1-deficiency","denotations":[{"id":"PD-NGLY1-deficiency-B_T1","span":{"begin":649,"end":655},"obj":"chem:24139"}],"namespaces":[{"prefix":"hgnc","uri":"https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:"},{"prefix":"omim","uri":"https://www.omim.org/entry/"},{"prefix":"chem","uri":"https://pubchem.ncbi.nlm.nih.gov/compound/"}],"attributes":[{"subj":"PD-NGLY1-deficiency-B_T1","pred":"source","obj":"NGLY1-deficiency"}]},{"project":"mondo_disease","denotations":[{"id":"T1","span":{"begin":13,"end":37},"obj":"Disease"},{"id":"T2","span":{"begin":42,"end":53},"obj":"Disease"},{"id":"T3","span":{"begin":164,"end":188},"obj":"Disease"},{"id":"T4","span":{"begin":190,"end":192},"obj":"Disease"},{"id":"T5","span":{"begin":330,"end":341},"obj":"Disease"},{"id":"T6","span":{"begin":403,"end":405},"obj":"Disease"},{"id":"T7","span":{"begin":441,"end":452},"obj":"Disease"},{"id":"T8","span":{"begin":472,"end":474},"obj":"Disease"},{"id":"T9","span":{"begin":956,"end":967},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0019350"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0000984"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0019350"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0019350"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0000984"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0019350"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0000984"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0019350"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0000984"},{"subj":"T1","pred":"source","obj":"mondo_disease"},{"subj":"T2","pred":"source","obj":"mondo_disease"},{"subj":"T3","pred":"source","obj":"mondo_disease"},{"subj":"T4","pred":"source","obj":"mondo_disease"},{"subj":"T5","pred":"source","obj":"mondo_disease"},{"subj":"T6","pred":"source","obj":"mondo_disease"},{"subj":"T7","pred":"source","obj":"mondo_disease"},{"subj":"T8","pred":"source","obj":"mondo_disease"},{"subj":"T9","pred":"source","obj":"mondo_disease"}]},{"project":"GlyCosmos6-Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":633,"end":644},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":291,"end":299},"obj":"http://purl.obolibrary.org/obo/MAT_0000032"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"GlyCosmos6-Glycan-Motif-Image","denotations":[{"id":"T1","span":{"begin":633,"end":644},"obj":"Glycan_Motif"}],"attributes":[{"id":"A1","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY"},{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":291,"end":299},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000032"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":139,"end":150},"obj":"Body_part"},{"id":"T2","span":{"begin":277,"end":290},"obj":"Body_part"},{"id":"T3","span":{"begin":291,"end":299},"obj":"Body_part"},{"id":"T4","span":{"begin":519,"end":531},"obj":"Body_part"},{"id":"T5","span":{"begin":819,"end":827},"obj":"Body_part"},{"id":"T8","span":{"begin":888,"end":900},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_0000232"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/GO_0005886"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0004288"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL_0000232"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/GO_0016020"},{"id":"A6","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0000094"},{"id":"A7","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"A8","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CL_0000232"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T2","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T3","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T4","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T5","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T8","pred":"source","obj":"Anatomy-UBERON"}]},{"project":"HP-phenotype","denotations":[{"id":"T1","span":{"begin":24,"end":37},"obj":"Phenotype"},{"id":"T2","span":{"begin":175,"end":188},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"HP:0004444"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"HP:0004444"},{"subj":"T1","pred":"source","obj":"HP-phenotype"},{"subj":"T2","pred":"source","obj":"HP-phenotype"}],"namespaces":[{"prefix":"HP","uri":"http://purl.obolibrary.org/obo/HP_"}]},{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":139,"end":150},"obj":"Cell"},{"id":"T2","span":{"begin":519,"end":531},"obj":"Cell"},{"id":"T3","span":{"begin":888,"end":900},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000232"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0000232"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000232"},{"subj":"T1","pred":"source","obj":"CL-cell"},{"subj":"T2","pred":"source","obj":"CL-cell"},{"subj":"T3","pred":"source","obj":"CL-cell"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"Allie","color":"#c193ec","default":true},{"id":"sentences","color":"#93eca7"},{"id":"NGLY1-deficiency","color":"#ec9398"},{"id":"mondo_disease","color":"#93b2ec"},{"id":"GlyCosmos6-Glycan-Motif-Structure","color":"#ccec93"},{"id":"Glycosmos6-MAT","color":"#ec93e6"},{"id":"GlyCosmos6-Glycan-Motif-Image","color":"#93ecd7"},{"id":"Anatomy-MAT","color":"#ecbd93"},{"id":"Anatomy-UBERON","color":"#a393ec"},{"id":"HP-phenotype","color":"#9cec93"},{"id":"CL-cell","color":"#ec93b6"}]}]}}