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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 106-131 DNA denotes HIV-2 transactivator gene
T2 307-333 DNA denotes transactivator (IE-2) gene
T3 471-485 DNA denotes HIV-2 tat gene
T4 540-562 cell_type denotes human CD4+ lymphocytes
T5 584-599 DNA denotes HIV-1 tat genes
T6 604-621 protein denotes T-cell activators
T7 673-691 DNA denotes CMV transactivator
T8 716-725 DNA denotes HIV-2 tat
T9 729-746 protein denotes T-cell activators
T10 846-865 DNA denotes CMV transactivators
T11 986-1004 DNA denotes CMV transactivator
T12 1080-1091 RNA denotes transcripts
T13 1142-1157 protein denotes transactivators
T14 1193-1219 DNA denotes HIV-2 long terminal repeat
T15 1221-1224 DNA denotes LTR
T16 1292-1314 cell_type denotes human CD4+ lymphocytes
T17 1368-1390 DNA denotes HIV-2 enhancer element

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 0-11 cui:C1292856 denotes Stimulation
E2-ti-1 19-54 cui:C0019707 denotes human immunodeficiency virus type 2
E3-ti-1 63-78 cui:C0017262 denotes gene expression
E4-ti-1 86-101 cui:C0010825 denotes cytomegalovirus
E5-ti-1 106-111 cui:C0019707 denotes HIV-2
E6-ti-1 112-126 cui:C0040627 denotes transactivator
E7-ti-1 127-131 cui:C0017337 denotes gene
T1 106-126 PART_OF denotes HIV-2 transactivator
E1-ab-1 133-161 cui:C0019682 denotes Human immunodeficiency virus
E2-ab-1 168-173 cui:C0332183 denotes often
E3-ab-1 181-197 cui:C0872054 denotes latent infection
T2 174-180 CAUSES denotes causes
E1-ab-2 199-214 cui:C0040624 denotes Transactivation
E2-ab-2 223-234 cui:C0012923 denotes DNA viruses
E3-ab-2 258-266 cui:C0205263 denotes inducing
E4-ab-2 267-272 cui:C0019704 denotes HIV-1
E5-ab-2 289-301 cui:C0699748 denotes pathogenesis
E1-ab-3 307-321 cui:C0040627 denotes transactivator
E2-ab-3 329-333 cui:C0017337 denotes gene
E3-ab-3 341-362 cui:C0010825 denotes human cytomegalovirus
E4-ab-3 381-386 cui:C0019707 denotes HIV-2
E5-ab-3 398-403 cui:C0019704 denotes HIV-1
E6-ab-3 404-419 cui:C0017262 denotes gene expression
T3 334-336 PART_OF denotes of
E1-ab-4 471-476 cui:C0019707 denotes HIV-2
E2-ab-4 477-485 cui:C0017375 denotes tat gene
E3-ab-4 490-507 cui:C1155065 denotes T-cell activation
E4-ab-4 521-536 cui:C0017262 denotes gene expression
E5-ab-4 540-545 cui:C0020114 denotes human
E6-ab-4 546-549 cui:C1332714 denotes CD4
E7-ab-4 551-562 cui:C0024264 denotes lymphocytes
T4 471-485 PART_OF denotes HIV-2 tat gene
T5 537-539 LOCATION_OF denotes in
E1-ab-5 574-579 cui:C0019707 denotes HIV-2
E2-ab-5 584-589 cui:C0019704 denotes HIV-1
E3-ab-5 590-599 cui:C0017375 denotes tat genes
E4-ab-5 604-610 cui:C0039194 denotes T-cell
E5-ab-5 622-632 cui:C0750541 denotes apparently
E6-ab-5 652-657 cui:C1513371 denotes modes
E7-ab-5 673-676 cui:C0010825 denotes CMV
E8-ab-5 677-691 cui:C0040627 denotes transactivator
E9-ab-5 695-706 cui:C0205195 denotes combination
E10-ab-5 716-721 cui:C0019707 denotes HIV-2
E11-ab-5 722-725 cui:C0017375 denotes tat
E12-ab-5 729-735 cui:C0039194 denotes T-cell
E13-ab-5 760-775 cui:C0017255 denotes gene activation
E14-ab-5 776-783 cui:C0243123 denotes pathway
E15-ab-5 794-800 cui:C0205214 denotes common
E16-ab-5 819-829 cui:C1524073 denotes components
T6 673-691 PART_OF denotes CMV transactivator
T7 716-725 PART_OF denotes HIV-2 tat
T8 707-711 PART_OF denotes with
T9 707-711 PART_OF denotes with
E1-ab-6 836-841 cui:C0019707 denotes HIV-2
E2-ab-6 846-849 cui:C0010825 denotes CMV
E3-ab-6 850-865 cui:C0040627 denotes transactivators
E4-ab-6 874-879 cui:C0019707 denotes HIV-2
E5-ab-6 880-895 cui:C0017262 denotes gene expression
E6-ab-6 899-925 cui:C0162493 denotes transcriptional activation
E7-ab-6 936-946 cui:C1519595 denotes transcript
E8-ab-6 986-989 cui:C0010825 denotes CMV
E9-ab-6 990-1004 cui:C0040627 denotes transactivator
E10-ab-6 1005-1014 cui:C0392760 denotes affecting
T10 846-865 PART_OF denotes CMV transactivators
E1-ab-7 1054-1065 cui:C0750502 denotes significant
E2-ab-7 1066-1076 cui:C0205351 denotes proportion
E3-ab-7 1080-1091 cui:C1519595 denotes transcripts
E4-ab-7 1142-1157 cui:C0040627 denotes transactivators
E1-ab-8 1159-1167 cui:C1442161 denotes Deletion
E2-ab-8 1168-1185 cui:C0796357 denotes mutation analysis
E3-ab-8 1193-1198 cui:C0441730 denotes HIV-2
E4-ab-8 1193-1219 cui:C0079517 denotes HIV-2 long terminal repeat
E5-ab-8 1244-1251 cui:C0013879 denotes element
E6-ab-8 1269-1272 cui:C0010825 denotes CMV
E7-ab-8 1273-1288 cui:C0040624 denotes transactivation
E8-ab-8 1292-1297 cui:C0020114 denotes human
E9-ab-8 1298-1301 cui:C1332714 denotes CD4
E10-ab-8 1303-1314 cui:C0024264 denotes lymphocytes
E11-ab-8 1327-1334 cui:C0205219 denotes diffuse
E12-ab-8 1335-1338 cui:C0205447 denotes one
E13-ab-8 1350-1360 cui:C0522506 denotes downstream
E14-ab-8 1368-1373 cui:C0019707 denotes HIV-2
E15-ab-8 1374-1390 cui:C0014290 denotes enhancer element
T11 1269-1288 PROCESS_OF denotes CMV transactivation
T12 1289-1291 LOCATION_OF denotes in
T13 1368-1390 PART_OF denotes HIV-2 enhancer element
R1 E6-ti-1 T1 subjectOf transactivator,HIV-2 transactivator
R2 E5-ti-1 T1 objectOf HIV-2,HIV-2 transactivator
R3 E1-ab-1 T2 subjectOf Human immunodeficiency virus,causes
R4 E3-ab-1 T2 objectOf latent infection,causes
R5 E2-ab-3 T3 subjectOf gene,of
R6 E3-ab-3 T3 objectOf human cytomegalovirus,of
R7 E2-ab-4 T4 subjectOf tat gene,HIV-2 tat gene
R8 E1-ab-4 T4 objectOf HIV-2,HIV-2 tat gene
R9 E7-ab-4 T5 subjectOf lymphocytes,in
R10 E2-ab-4 T5 objectOf tat gene,in
R11 E8-ab-5 T6 subjectOf transactivator,CMV transactivator
R12 E7-ab-5 T6 objectOf CMV,CMV transactivator
R13 E11-ab-5 T7 subjectOf tat,HIV-2 tat
R14 E10-ab-5 T7 objectOf HIV-2,HIV-2 tat
R15 E11-ab-5 T8 subjectOf tat,with
R16 E1-ab-5 T8 objectOf HIV-2,with
R17 E11-ab-5 T9 subjectOf tat,with
R18 E4-ab-5 T9 objectOf T-cell,with
R19 E3-ab-6 T10 subjectOf transactivators,CMV transactivators
R20 E2-ab-6 T10 objectOf CMV,CMV transactivators
R21 E7-ab-8 T11 subjectOf transactivation,CMV transactivation
R22 E6-ab-8 T11 objectOf CMV,CMV transactivation
R23 E10-ab-8 T12 subjectOf lymphocytes,in
R24 E5-ab-8 T12 objectOf element,in
R25 E15-ab-8 T13 subjectOf enhancer element,HIV-2 enhancer element
R26 E14-ab-8 T13 objectOf HIV-2,HIV-2 enhancer element

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-132 Sentence denotes Stimulation of the human immunodeficiency virus type 2 (HIV-2) gene expression by the cytomegalovirus and HIV-2 transactivator gene.
S2 133-198 Sentence denotes Human immunodeficiency virus (HIV) often causes latent infection.
S3 199-302 Sentence denotes Transactivation by some DNA viruses has been implicated in inducing HIV-1 replication and pathogenesis.
S4 303-429 Sentence denotes The transactivator (IE-2) gene of the human cytomegalovirus (CMV) can enhance HIV-2 as well as HIV-1 gene expression in vitro.
S5 430-563 Sentence denotes This inducer can act in concert with the HIV-2 tat gene and T-cell activation in enhancing gene expression in human CD4+ lymphocytes.
S6 564-830 Sentence denotes While the HIV-2 and HIV-1 tat genes and T-cell activators apparently employ independent modes of action, the CMV transactivator in combination with the HIV-2 tat or T-cell activators may employ a gene activation pathway with some common and some distinct components.
S7 831-1051 Sentence denotes Both HIV-2 and CMV transactivators enhance HIV-2 gene expression by transcriptional activation involving transcript initiation as well as elongation, with CMV transactivator affecting elongation more than the initiation.
S8 1052-1158 Sentence denotes A significant proportion of transcripts appear to terminate prematurely in the absence of transactivators.
S9 1159-1391 Sentence denotes Deletion mutation analysis of the HIV-2 long terminal repeat (LTR) suggests that the element that responds to CMV transactivation in human CD4+ lymphocytes is either a diffuse one or located downstream of the HIV-2 enhancer element.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 15-78 NP denotes the human immunodeficiency virus type 2 (HIV-2) gene expression
C2 82-101 NP denotes the cytomegalovirus
C3 106-131 NP denotes HIV-2 transactivator gene
C5 337-368 NP denotes the human cytomegalovirus (CMV)
C4 303-368 NP denotes The transactivator (IE-2) gene of the human cytomegalovirus (CMV)
C6 430-442 NP denotes This inducer
C7 467-485 NP denotes the HIV-2 tat gene
C8 540-562 NP denotes human CD4+ lymphocytes
C9 604-621 NP denotes T-cell activators
C10 669-691 NP denotes the CMV transactivator
C11 712-725 NP denotes the HIV-2 tat
C12 729-746 NP denotes T-cell activators
C13 836-841 NP denotes HIV-2
C14 846-865 NP denotes CMV transactivators
C15 874-895 NP denotes HIV-2 gene expression
C16 986-1004 NP denotes CMV transactivator
C17 1240-1251 NP denotes the element
C18 1252-1256 NP denotes that
C19 1292-1314 NP denotes human CD4+ lymphocytes
R1 C5 C2 coref-ident the human cytomegalovirus (CMV),the cytomegalovirus
R2 C6 C4 coref-ident This inducer,The transactivator (IE-2) gene of the human cytomegalovirus (CMV)
R3 C7 C3 coref-ident the HIV-2 tat gene,HIV-2 transactivator gene
R4 C10 C4 coref-ident the CMV transactivator,The transactivator (IE-2) gene of the human cytomegalovirus (CMV)
R5 C11 C7 coref-ident the HIV-2 tat,the HIV-2 tat gene
R6 C12 C9 coref-ident T-cell activators,T-cell activators
R7 C13 C11 coref-ident HIV-2,the HIV-2 tat
R8 C14 C10 coref-ident CMV transactivators,the CMV transactivator
R9 C15 C1 coref-ident HIV-2 gene expression,the human immunodeficiency virus type 2 (HIV-2) gene expression
R10 C16 C14 coref-ident CMV transactivator,CMV transactivators
R11 C18 C17 coref-relat that,the element
R12 C19 C8 coref-ident human CD4+ lymphocytes,human CD4+ lymphocytes

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 19-54 virus denotes human immunodeficiency virus type 2
T2 56-61 virus denotes HIV-2
T3 86-101 virus denotes cytomegalovirus
T4 106-111 virus denotes HIV-2
T5 133-161 virus denotes Human immunodeficiency virus
T6 163-166 virus denotes HIV
T7 223-234 virus denotes DNA viruses
T8 267-284 other_name denotes HIV-1 replication
T9 307-333 DNA_domain_or_region denotes transactivator (IE-2) gene
T10 347-362 virus denotes cytomegalovirus
T11 364-367 virus denotes CMV
T12 381-386 virus denotes HIV-2
T13 398-403 virus denotes HIV-1
T14 471-476 virus denotes HIV-2
T15 490-507 other_name denotes T-cell activation
T16 540-562 cell_type denotes human CD4+ lymphocytes
T17 574-579 virus denotes HIV-2
T18 584-589 virus denotes HIV-1
T19 604-621 protein_family_or_group denotes T-cell activators
T20 673-691 DNA_domain_or_region denotes CMV transactivator
T21 716-721 virus denotes HIV-2
T22 729-746 protein_family_or_group denotes T-cell activators
T23 760-783 other_name denotes gene activation pathway
T24 836-841 virus denotes HIV-2
T25 846-849 DNA_domain_or_region denotes CMV
T26 850-865 protein_family_or_group denotes transactivators
T27 874-879 virus denotes HIV-2
T28 899-925 other_name denotes transcriptional activation
T29 936-957 other_name denotes transcript initiation
T30 969-979 other_name denotes elongation
T31 986-989 DNA_domain_or_region denotes CMV
T32 990-1004 protein_family_or_group denotes transactivator
T33 1015-1025 other_name denotes elongation
T34 1040-1050 other_name denotes initiation
T35 1080-1091 RNA_family_or_group denotes transcripts
T36 1142-1157 protein_family_or_group denotes transactivators
T37 1159-1185 other_name denotes Deletion mutation analysis
T38 1193-1198 virus denotes HIV-2
T39 1221-1224 DNA_domain_or_region denotes LTR
T40 1269-1272 virus denotes CMV
T41 1292-1314 cell_type denotes human CD4+ lymphocytes
T42 1368-1373 virus denotes HIV-2

metamap-sample

Id Subject Object Predicate Lexical cue
T1 1369-1373 C0019707 denotes IV-2
T2 472-477 C0019707 denotes IV-2
T3 382-387 C0019707 denotes IV-2
T4 107-112 C0019707 denotes IV-2
T5 20-55 C0019707 denotes uman immunodeficiency virus type 2
T6 1270-1273 C0010825 denotes MV
T7 674-676 C0010825 denotes MV
T8 348-363 C0010825 denotes ytomegalovirus
T9 87-102 C0010825 denotes ytomegalovirus
T10 330-334 C0017337 denotes ene
T11 128-132 C0017337 denotes ene.
T12 1143-1158 C0040627 denotes ransactivators.
T13 991-1005 C0040627 denotes ransactivator
T14 851-866 C0040627 denotes ransactivators
T15 678-692 C0040627 denotes ransactivator
T16 308-322 C0040627 denotes ransactivator
T17 113-127 C0040627 denotes ransactivator
T18 881-896 C0017262 denotes ene expression
T19 405-420 C0017262 denotes ene expression
T20 64-79 C0017262 denotes ene expression
T21 1-12 C1948023 denotes timulation
T22 1293-1297 C0086418 denotes uman
T23 541-546 C0086418 denotes uman
T24 342-347 C0086418 denotes uman
T25 585-590 C0019704 denotes IV-1
T26 399-404 C0019704 denotes IV-1
T27 268-273 C0019704 denotes IV-1
T28 591-600 C0017375 denotes at genes
T29 478-486 C0017375 denotes at gene
T30 1274-1289 C0040624 denotes ransactivation
T31 200-214 C0040624 denotes ransactivation
T32 448-450 C0079613 denotes ct
T33 759-765 C0079429 denotes gene
T34 1375-1391 C0014290 denotes nhancer element.
T35 134-162 C0019682 denotes uman immunodeficiency virus
T36 1194-1219 C0079517 denotes IV-2 long terminal repeat
T37 653-668 C1524059 denotes odes of action,
T38 274-285 C0598312 denotes eplication
T39 175-181 C0015127 denotes auses
T40 867-874 C2349975 denotes nhance
T41 512-521 C2349975 denotes nhancing
T42 374-381 C2349975 denotes nhance
T43 1103-1112 C0011065 denotes erminate
T44 224-235 C0012923 denotes NA viruses
T45 421-429 C0021135 denotes n vitro.
T46 1081-1092 C1519595 denotes ranscripts
T47 937-947 C1519595 denotes ranscript
T48 327-328 C2827735 denotes )
T49 1093-1099 C0700364 denotes ppear
T50 927-936 C1314939 denotes nvolving
T51 182-198 C0872054 denotes atent infection.
T52 1100-1102 C1883351 denotes o
T53 290-302 C0543483 denotes athogenesis.
T54 1227-1235 C1705535 denotes uggests
T55 820-830 C0449432 denotes omponents.
T56 1336-1339 C0205447 denotes ne
T57 491-508 C1155065 denotes -cell activation
T58 1067-1077 C1709707 denotes roportion
T59 1132-1139 C0332197 denotes bsence
T60 1169-1186 C0796357 denotes utation analysis
T61 777-784 C1704259 denotes athway
T62 259-267 C0205263 denotes nducing
T63 1328-1335 C0205219 denotes iffuse
T64 169-174 C0332183 denotes ften
T65 623-633 C0750541 denotes pparently
T66 342-363 C0205725 denotes uman cytomegalovirus
T67 1006-1015 C0392760 denotes ffecting
T68 641-652 C1299583 denotes ndependent
T69 1055-1065 C0237881 denotes ignificant
T70 696-707 C1947911 denotes ombination
T71 1194-1199 C0441730 denotes IV-2
T72 766-776 C1879547 denotes ctivation
T73 795-801 C1522138 denotes ommon
T74 1351-1361 C0522506 denotes ownstream
T75 1160-1168 C1442161 denotes eletion