PubMed:19635799
Annnotations
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 437-445 | WTO:0000245, funRiceGene:419 | denotes | pathogen |
| M_1 | 1798-1842 | xzyao:396 | denotes | inductive diterpenoid phytoalexin production |
| M_2 | 1808-1831 | xzyao:11519 | denotes | diterpenoid phytoalexin |
| M_3 | 1588-1597 | funRiceGene:62 | denotes | phosphate |
| M_4 | 1820-1842 | funRiceGene:80, xzyao:2705 | denotes | phytoalexin production |
| M_5 | 770-794 | xzyao:16614 | denotes | momilactone biosynthesis |
| M_6 | 0-7 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_7 | 738-745 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_8 | 883-890 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_9 | 1218-1225 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_10 | 1487-1494 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_11 | 1707-1714 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_12 | 1080-1092 | hunflair:NA:Chemical | denotes | phytocassane |
| M_13 | 1164-1176 | hunflair:NA:Chemical | denotes | phytocassane |
| M_14 | 961-968 | hunflair:NA:Gene | denotes | CYP99A2 |
| M_15 | 89-100 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_16 | 143-154 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_17 | 1653-1664 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_18 | 1808-1819 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_19 | 983-988 | hunflair:NA:Gene | denotes | OsMAS |
| M_20 | 1557-1563 | hunflair:NA:Gene | denotes | OsDXS3 |
| M_21 | 1139-1146 | hunflair:NA:Gene | denotes | ostgap1 |
| M_22 | 1218-1240 | hunflair:NA:Gene | denotes | OsTGAP1-overexpressing |
| M_23 | 186-199 | hunflair:NA:Chemical | denotes | phytocassanes |
| M_24 | 1435-1448 | hunflair:NA:Chemical | denotes | phytocassanes |
| M_25 | 970-977 | hunflair:NA:Gene | denotes | CYP99A3 |
| M_26 | 1069-1075 | hunflair:NA:Gene | denotes | OsKSL7 |
| M_27 | 1403-1409 | hunflair:NA:Gene | denotes | OsKSL7 |
| M_28 | 1571-1597 | hunflair:NA:Chemical | denotes | methylerythritol phosphate |
| M_29 | 953-959 | hunflair:NA:Gene | denotes | OsKSL4 |
| M_30 | 1820-1831 | hunflair:NA:Chemical | denotes | phytoalexin |
| M_31 | 945-951 | hunflair:NA:Gene | denotes | OsCPS4 |
| M_32 | 89-113 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_33 | 143-167 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_34 | 1653-1677 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_35 | 101-113 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_36 | 155-167 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_37 | 1665-1677 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_38 | 169-181 | hunflair:NA:Chemical | denotes | momilactones |
| M_39 | 343-355 | hunflair:NA:Chemical | denotes | momilactones |
| M_40 | 1007-1019 | hunflair:NA:Chemical | denotes | momilactones |
| M_41 | 1325-1337 | hunflair:NA:Chemical | denotes | momilactones |
| M_42 | 117-121 | hunflair:NA:Species | denotes | rice |
| M_43 | 215-219 | hunflair:NA:Species | denotes | rice |
| M_44 | 373-377 | hunflair:NA:Species | denotes | rice |
| M_45 | 1846-1850 | hunflair:NA:Species | denotes | rice |
| M_46 | 770-781 | hunflair:NA:Chemical | denotes | momilactone |
| M_47 | 1928-1939 | hunflair:NA:Chemical | denotes | momilactone |
| M_48 | 11-36 | hunflair:NA:Gene | denotes | bZIP transcription factor |
| M_49 | 695-736 | hunflair:NA:Gene | denotes | basic leucine zipper transcription factor |
| M_50 | 186-199 | pubtator::Chemical | denotes | phytocassanes |
| M_51 | 1435-1448 | pubtator::Chemical | denotes | phytocassanes |
| M_52 | 89-100 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid |
| M_53 | 143-154 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid |
| M_54 | 1653-1664 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid |
| M_55 | 1808-1819 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid |
| M_56 | 770-781 | pubtator:MESH:C116023:Chemical | denotes | momilactone |
| M_57 | 1928-1939 | pubtator:MESH:C116023:Chemical | denotes | momilactone |
| M_58 | 1571-1597 | pubtator:MESH:C114232:Chemical | denotes | methylerythritol phosphate |
| M_59 | 1808-1831 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid phytoalexin |
| M_60 | 169-181 | pubtator:MESH:C116023:Chemical | denotes | momilactones |
| M_61 | 343-355 | pubtator:MESH:C116023:Chemical | denotes | momilactones |
| M_62 | 1007-1019 | pubtator:MESH:C116023:Chemical | denotes | momilactones |
| M_63 | 1325-1337 | pubtator:MESH:C116023:Chemical | denotes | momilactones |
| M_64 | 701-708 | pubtator:MESH:C038361:Chemical | denotes | leucine |
| M_65 | 1080-1092 | pubtator::Chemical | denotes | phytocassane |
| M_66 | 1164-1176 | pubtator::Chemical | denotes | phytocassane |
| M_67 | 117-121 | pubtator:4530:Species | denotes | rice |
| M_68 | 215-219 | pubtator:4530:Species | denotes | rice |
| M_69 | 373-377 | pubtator:4530:Species | denotes | rice |
| M_70 | 1846-1850 | pubtator:4530:Species | denotes | rice |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-7 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T2 | 738-745 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T3 | 883-890 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T4 | 945-951 | http://identifiers.org/oryzabase.gene/3130 | denotes | OsCPS4 |
| T5 | 953-959 | http://identifiers.org/oryzabase.gene/3134 | denotes | OsKSL4 |
| T6 | 961-968 | http://identifiers.org/oryzabase.gene/7171 | denotes | CYP99A2 |
| T7 | 970-977 | http://identifiers.org/oryzabase.gene/7172 | denotes | CYP99A3 |
| T8 | 983-988 | http://identifiers.org/oryzabase.gene/7170 | denotes | OsMAS |
| T9 | 1069-1075 | http://identifiers.org/oryzabase.gene/3137 | denotes | OsKSL7 |
| T10 | 1218-1225 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T11 | 1403-1409 | http://identifiers.org/oryzabase.gene/3137 | denotes | OsKSL7 |
| T12 | 1487-1494 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T13 | 1557-1563 | http://identifiers.org/oryzabase.gene/14689 | denotes | OsDXS3 |
| T14 | 1707-1714 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T53357 | 0-7 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T15978 | 738-745 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T81262 | 883-890 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T48101 | 945-951 | http://identifiers.org/rapdb.locus/Os04g0178300 | denotes | OsCPS4 |
| T63727 | 953-959 | http://identifiers.org/rapdb.locus/Os04g0179700 | denotes | OsKSL4 |
| T30300 | 961-968 | http://identifiers.org/rapdb.locus/Os04g0180400 | denotes | CYP99A2 |
| T59089 | 970-977 | http://identifiers.org/rapdb.locus/Os04g0178400 | denotes | CYP99A3 |
| T20891 | 983-988 | http://identifiers.org/rapdb.locus/Os04g0179200 | denotes | OsMAS |
| T10280 | 1069-1075 | http://identifiers.org/rapdb.locus/Os02g0570400 | denotes | OsKSL7 |
| T8862 | 1218-1225 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T71821 | 1403-1409 | http://identifiers.org/rapdb.locus/Os02g0570400 | denotes | OsKSL7 |
| T41967 | 1487-1494 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T88439 | 1557-1563 | http://identifiers.org/rapdb.locus/Os07g0190000 | denotes | OsDXS3 |
| T39848 | 1707-1714 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1164-1189 | cand:funRiceGene:122-Fe accumulation | denotes | phytocassane accumulation |
| M_1 | 1164-1189 | cand:funRiceGene:231-arsenic accumulation | denotes | phytocassane accumulation |
| M_2 | 1164-1189 | cand:funRiceGene:188-cadmium accumulation | denotes | phytocassane accumulation |
| M_3 | 1164-1189 | cand:funRiceGene:139-ABA catabolism | denotes | phytocassane accumulation |
| M_4 | 1164-1189 | cand:funRiceGene:76-phosphate starvation signaling | denotes | phytocassane accumulation |
| M_5 | 1164-1189 | cand:funRiceGene:236-biosynthesis of phytoalexins | denotes | phytocassane accumulation |
| M_6 | 1164-1189 | cand:funRiceGene:109-phytoalexin production | denotes | phytocassane accumulation |
| M_7 | 1164-1189 | cand:funRiceGene:150-phosphate acquisition | denotes | phytocassane accumulation |
| M_8 | 11-36 | cand:funRiceGene:103-transcription factor | denotes | bZIP transcription factor |
| M_9 | 11-36 | cand:funRiceGene:16-MYB transcriptional activator | denotes | bZIP transcription factor |
| M_10 | 11-36 | cand:funRiceGene:32-transcription regulator | denotes | bZIP transcription factor |
| M_11 | 11-36 | cand:funRiceGene:25-transcription activator | denotes | bZIP transcription factor |
| M_12 | 11-36 | cand:funRiceGene:228-transcriptional activator | denotes | bZIP transcription factor |
| M_13 | 11-36 | cand:funRiceGene:333-transcription suppressor | denotes | bZIP transcription factor |
| M_14 | 1045-1065 | cand:funRiceGene:336-homeobox gene | denotes | Inductive expression |
| M_15 | 1045-1065 | cand:PO:0004503-stigma cell differentiation stage | denotes | Inductive expression |
| M_16 | 1045-1065 | cand:funRiceGene:103-transcription factor | denotes | Inductive expression |
| M_17 | 1045-1065 | cand:PO:0001077-lodicule differentiation and expansion stage | denotes | Inductive expression |
| M_18 | 1045-1065 | cand:PO:0006087-proliferation tissue | denotes | Inductive expression |
| M_19 | 1045-1065 | cand:PO:0020097-generative cell | denotes | Inductive expression |
| M_20 | 1045-1065 | cand:TO:0020069-spike exsertion | denotes | Inductive expression |
| M_21 | 1045-1065 | cand:PECO:0007547-iodine exposure | denotes | Inductive expression |
| M_22 | 1045-1065 | cand:WTO:0000065-anther extrusion | denotes | Inductive expression |
| M_23 | 1045-1065 | cand:funRiceGene:125-oxidative stress | denotes | Inductive expression |
| M_24 | 1045-1065 | cand:PECO:0007632-insecticide exposure | denotes | Inductive expression |
| M_25 | 65-85 | cand:funRiceGene:214-biomass production | denotes | inductive production |
| M_26 | 65-85 | cand:PECO:0007266-in vitro growth medium exposure | denotes | inductive production |
| M_27 | 65-85 | cand:PO:0007060-obsolete growth and development terms | denotes | inductive production |
| M_28 | 65-85 | cand:PO:0001056-lemma differentiation and expansion stage | denotes | inductive production |
| M_29 | 65-85 | cand:TO:0000243-in vitro regeneration ability | denotes | inductive production |
| M_30 | 65-85 | cand:PO:0001077-lodicule differentiation and expansion stage | denotes | inductive production |
| M_31 | 65-85 | cand:funRiceGene:15-ethylene production | denotes | inductive production |
| M_32 | 65-85 | cand:PO:0008007-nucellar projection | denotes | inductive production |
| M_33 | 65-85 | cand:funRiceGene:172-bioethanol production | denotes | inductive production |
| M_34 | 65-85 | cand:WTO:0000049-reproduction | denotes | inductive production |
| M_35 | 1069-1075 | GeneID:RAPID:Os02g0570400MSUID:LOC_Os02g36140GraID:GR:0020073 | denotes | OsKSL7 |
| M_36 | 1139-1146 | GeneID:RAPID:Os04g0637000MSUID:LOC_Os04g54474 | denotes | ostgap1 |
| M_37 | 0-7 | GeneID:RAPID:Os04g0637000MSUID:LOC_Os04g54474 | denotes | OsTGAP1 |
| T40807 | 11-36 | xzyao:7280 | denotes | bZIP transcription factor |
| T84031 | 269-294 | xzyao:39922 | denotes | defense-related compounds |
| T77900 | 137-167 | xzyao:24903 | denotes | major diterpenoid phytoalexins |
| T88931 | 1820-1842 | funRiceGene:80, xzyao:24258 | denotes | phytoalexin production |
| T30333 | 653-675 | xzyao:20824 | denotes | chitin oligosaccharide |
| T85186 | 1045-1065 | xzyao:27993 | denotes | Inductive expression |
| T939 | 1588-1597 | funRiceGene:62 | denotes | phosphate |
| T84218 | 770-794 | xzyao:27954 | denotes | momilactone biosynthesis |
| T88373 | 1928-1952 | xzyao:27954 | denotes | momilactone biosynthesis |
| T85308 | 1808-1842 | xzyao:25395 | denotes | diterpenoid phytoalexin production |
| T22455 | 263-276 | xzyao:45016 | denotes | plant defense |
| T47784 | 16-36 | funRiceGene:298, xzyao:14211 | denotes | transcription factor |
| T46793 | 716-736 | funRiceGene:298, xzyao:14211 | denotes | transcription factor |
| T59171 | 65-85 | xzyao:22445 | denotes | inductive production |
| T69740 | 1629-1649 | xzyao:22445 | denotes | inductive production |
| T8872 | 269-276 | funRiceGene:307 | denotes | defense |
| T97179 | 437-445 | WTO:0000245, funRiceGene:419 | denotes | pathogen |
| T81520 | 437-452 | xzyao:40129 | denotes | pathogen attack |
| T27082 | 695-736 | hunflair:NA:Gene | denotes | basic leucine zipper transcription factor |
| T81528 | 186-199 | hunflair:NA:Chemical | denotes | phytocassanes |
| T74350 | 1435-1448 | hunflair:NA:Chemical | denotes | phytocassanes |
| T73520 | 953-959 | hunflair:NA:Gene | denotes | OsKSL4 |
| T17048 | 101-113 | hunflair:NA:Chemical | denotes | phytoalexins |
| T28836 | 155-167 | hunflair:NA:Chemical | denotes | phytoalexins |
| T8333 | 1665-1677 | hunflair:NA:Chemical | denotes | phytoalexins |
| T43474 | 89-113 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| T67736 | 143-167 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| T72900 | 1653-1677 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| T83116 | 1557-1563 | hunflair:NA:Gene | denotes | OsDXS3 |
| T4861 | 11-36 | hunflair:NA:Gene | denotes | bZIP transcription factor |
| T99180 | 1571-1597 | hunflair:NA:Chemical | denotes | methylerythritol phosphate |
| T5957 | 169-181 | hunflair:NA:Chemical | denotes | momilactones |
| T6678 | 343-355 | hunflair:NA:Chemical | denotes | momilactones |
| T39014 | 1007-1019 | hunflair:NA:Chemical | denotes | momilactones |
| T14539 | 1325-1337 | hunflair:NA:Chemical | denotes | momilactones |
| T12607 | 89-100 | hunflair:NA:Chemical | denotes | diterpenoid |
| T93202 | 143-154 | hunflair:NA:Chemical | denotes | diterpenoid |
| T30012 | 1653-1664 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_38 | 1808-1819 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_39 | 1820-1831 | hunflair:NA:Chemical | denotes | phytoalexin |
| M_40 | 961-968 | hunflair:NA:Gene | denotes | CYP99A2 |
| M_41 | 1218-1240 | hunflair:NA:Gene | denotes | OsTGAP1-overexpressing |
| M_42 | 983-988 | hunflair:NA:Gene | denotes | OsMAS |
| M_43 | 0-7 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_44 | 738-745 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_45 | 883-890 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_46 | 1218-1225 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_47 | 1487-1494 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_48 | 1707-1714 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_49 | 770-781 | hunflair:NA:Chemical | denotes | momilactone |
| M_50 | 1928-1939 | hunflair:NA:Chemical | denotes | momilactone |
| M_51 | 1080-1092 | hunflair:NA:Chemical | denotes | phytocassane |
| M_52 | 1164-1176 | hunflair:NA:Chemical | denotes | phytocassane |
| M_53 | 1069-1075 | hunflair:NA:Gene | denotes | OsKSL7 |
| M_54 | 1403-1409 | hunflair:NA:Gene | denotes | OsKSL7 |
| M_55 | 970-977 | hunflair:NA:Gene | denotes | CYP99A3 |
| M_56 | 117-121 | hunflair:NA:Species | denotes | rice |
| M_57 | 215-219 | hunflair:NA:Species | denotes | rice |
| M_58 | 373-377 | hunflair:NA:Species | denotes | rice |
| M_59 | 1846-1850 | hunflair:NA:Species | denotes | rice |
| M_60 | 945-951 | hunflair:NA:Gene | denotes | OsCPS4 |
| M_61 | 1139-1146 | hunflair:NA:Gene | denotes | ostgap1 |
| M_62 | 1808-1831 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid phytoalexin |
| M_63 | 89-100 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid |
| M_64 | 143-154 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid |
| M_65 | 1653-1664 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid |
| M_66 | 1808-1819 | pubtator:MESH:C503616:Chemical | denotes | diterpenoid |
| M_67 | 169-181 | pubtator:MESH:C116023:Chemical | denotes | momilactones |
| M_68 | 343-355 | pubtator:MESH:C116023:Chemical | denotes | momilactones |
| M_69 | 1007-1019 | pubtator:MESH:C116023:Chemical | denotes | momilactones |
| M_70 | 1325-1337 | pubtator:MESH:C116023:Chemical | denotes | momilactones |
| M_71 | 701-708 | pubtator:MESH:C038361:Chemical | denotes | leucine |
| M_72 | 1571-1597 | pubtator:MESH:C114232:Chemical | denotes | methylerythritol phosphate |
| M_73 | 186-199 | pubtator::Chemical | denotes | phytocassanes |
| M_74 | 1435-1448 | pubtator::Chemical | denotes | phytocassanes |
| M_75 | 1080-1092 | pubtator::Chemical | denotes | phytocassane |
| M_76 | 1164-1176 | pubtator::Chemical | denotes | phytocassane |
| M_77 | 117-121 | pubtator:4530:Species | denotes | rice |
| M_78 | 215-219 | pubtator:4530:Species | denotes | rice |
| M_79 | 373-377 | pubtator:4530:Species | denotes | rice |
| M_80 | 1846-1850 | pubtator:4530:Species | denotes | rice |
| M_81 | 770-781 | pubtator:MESH:C116023:Chemical | denotes | momilactone |
| M_82 | 1928-1939 | pubtator:MESH:C116023:Chemical | denotes | momilactone |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-122 | Sentence | denotes | OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. |
| T2 | 123-295 | Sentence | denotes | Production of major diterpenoid phytoalexins, momilactones and phytocassanes, is induced in rice upon recognition of pathogenic invasion as plant defense-related compounds. |
| T3 | 296-453 | Sentence | denotes | We recently showed that biosynthetic genes for momilactones are clustered on rice chromosome 4 and co-expressed after elicitation, mimicking pathogen attack. |
| T4 | 454-634 | Sentence | denotes | Because genes for most metabolic pathways in plants are not organized in gene clusters, examination of the mechanism(s) regulating the expression of such clustered genes is needed. |
| T5 | 635-857 | Sentence | denotes | Here, we report a chitin oligosaccharide elicitor-inducible basic leucine zipper transcription factor, OsTGAP1, which is essential for momilactone biosynthesis and regulates the expression of the five genes in the cluster. |
| T6 | 858-1044 | Sentence | denotes | The knock-out mutant for OsTGAP1 had almost no expression of the five clustered genes (OsCPS4, OsKSL4, CYP99A2, CYP99A3, and OsMAS) or production of momilactones upon elicitor treatment. |
| T7 | 1045-1205 | Sentence | denotes | Inductive expression of OsKSL7 for phytocassane biosynthesis was also largely affected in the ostgap1 mutant, although phytocassane accumulation still occurred. |
| T8 | 1206-1366 | Sentence | denotes | Conversely, OsTGAP1-overexpressing lines exhibited enhanced expression of the clustered genes and hyperaccumulation of momilactones in response to the elicitor. |
| T9 | 1367-1467 | Sentence | denotes | Furthermore, enhanced expression of OsKSL7 and hyperaccumulation of phytocassanes was also observed. |
| T10 | 1468-1678 | Sentence | denotes | We also found that OsTGAP1 overexpression can influence transcriptional up-regulation of OsDXS3 in the methylerythritol phosphate pathway, eventually leading to inductive production of diterpenoid phytoalexins. |
| T11 | 1679-1953 | Sentence | denotes | These results indicate that OsTGAP1 functions as a key regulator of the coordinated transcription of genes involved in inductive diterpenoid phytoalexin production in rice and mainly exerts an essential role on expression of the clustered genes for momilactone biosynthesis. |
PMID_GLOBAL
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 1510-1513 | DiseaseOrPhenotypicFeature | denotes | can | 0012833 |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1218-1240 | hunflair:NA:Gene | denotes | OsTGAP1-overexpressing |
| M_1 | 89-100 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_2 | 143-154 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_3 | 1653-1664 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_4 | 1808-1819 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_5 | 970-977 | hunflair:NA:Gene | denotes | CYP99A3 |
| M_6 | 117-121 | hunflair:NA:Species | denotes | rice |
| M_7 | 215-219 | hunflair:NA:Species | denotes | rice |
| M_8 | 373-377 | hunflair:NA:Species | denotes | rice |
| M_9 | 1846-1850 | hunflair:NA:Species | denotes | rice |
| M_10 | 169-181 | hunflair:NA:Chemical | denotes | momilactones |
| M_11 | 343-355 | hunflair:NA:Chemical | denotes | momilactones |
| M_12 | 1007-1019 | hunflair:NA:Chemical | denotes | momilactones |
| M_13 | 1325-1337 | hunflair:NA:Chemical | denotes | momilactones |
| M_14 | 186-199 | hunflair:NA:Chemical | denotes | phytocassanes |
| M_15 | 1435-1448 | hunflair:NA:Chemical | denotes | phytocassanes |
| M_16 | 1820-1831 | hunflair:NA:Chemical | denotes | phytoalexin |
| M_17 | 953-959 | hunflair:NA:Gene | denotes | OsKSL4 |
| M_18 | 101-113 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_19 | 155-167 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_20 | 1665-1677 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_21 | 770-781 | hunflair:NA:Chemical | denotes | momilactone |
| M_22 | 1928-1939 | hunflair:NA:Chemical | denotes | momilactone |
| M_23 | 89-113 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_24 | 143-167 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_25 | 1653-1677 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_26 | 983-988 | hunflair:NA:Gene | denotes | OsMAS |
| M_27 | 945-951 | hunflair:NA:Gene | denotes | OsCPS4 |
| M_28 | 0-7 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_29 | 738-745 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_30 | 883-890 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_31 | 1218-1225 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_32 | 1487-1494 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_33 | 1707-1714 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_34 | 1571-1597 | hunflair:NA:Chemical | denotes | methylerythritol phosphate |
| M_35 | 1557-1563 | hunflair:NA:Gene | denotes | OsDXS3 |
| M_36 | 1139-1146 | hunflair:NA:Gene | denotes | ostgap1 |
| M_37 | 1069-1075 | hunflair:NA:Gene | denotes | OsKSL7 |
| M_38 | 1403-1409 | hunflair:NA:Gene | denotes | OsKSL7 |
| M_39 | 1080-1092 | hunflair:NA:Chemical | denotes | phytocassane |
| M_40 | 1164-1176 | hunflair:NA:Chemical | denotes | phytocassane |
| M_41 | 695-736 | hunflair:NA:Gene | denotes | basic leucine zipper transcription factor |
| M_42 | 961-968 | hunflair:NA:Gene | denotes | CYP99A2 |
| M_43 | 11-36 | hunflair:NA:Gene | denotes | bZIP transcription factor |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-7 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T2 | 738-745 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T3 | 883-890 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T4 | 945-951 | http://identifiers.org/oryzabase.gene/3130 | denotes | OsCPS4 |
| T5 | 953-959 | http://identifiers.org/oryzabase.gene/3134 | denotes | OsKSL4 |
| T6 | 961-968 | http://identifiers.org/oryzabase.gene/7171 | denotes | CYP99A2 |
| T7 | 970-977 | http://identifiers.org/oryzabase.gene/7172 | denotes | CYP99A3 |
| T8 | 983-988 | http://identifiers.org/oryzabase.gene/7170 | denotes | OsMAS |
| T9 | 1069-1075 | http://identifiers.org/oryzabase.gene/3137 | denotes | OsKSL7 |
| T10 | 1139-1146 | http://identifiers.org/oryzabase.gene/10124 | denotes | ostgap1 |
| T11 | 1218-1225 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T12 | 1403-1409 | http://identifiers.org/oryzabase.gene/3137 | denotes | OsKSL7 |
| T13 | 1487-1494 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T14 | 1557-1563 | http://identifiers.org/oryzabase.gene/14689 | denotes | OsDXS3 |
| T15 | 1707-1714 | http://identifiers.org/oryzabase.gene/10124 | denotes | OsTGAP1 |
| T47687 | 0-7 | http://identifiers.org/ricegap/LOC_Os04g54474 | denotes | OsTGAP1 |
| T79455 | 738-745 | http://identifiers.org/ricegap/LOC_Os04g54474 | denotes | OsTGAP1 |
| T86867 | 883-890 | http://identifiers.org/ricegap/LOC_Os04g54474 | denotes | OsTGAP1 |
| T43106 | 945-951 | http://identifiers.org/ricegap/LOC_Os04g09900 | denotes | OsCPS4 |
| T8745 | 953-959 | http://identifiers.org/ricegap/LOC_Os04g10060 | denotes | OsKSL4 |
| T52479 | 961-968 | http://identifiers.org/ricegap/LOC_Os04g10160 | denotes | CYP99A2 |
| T80798 | 970-977 | http://identifiers.org/ricegap/LOC_Os04g09920 | denotes | CYP99A3 |
| T3783 | 983-988 | http://identifiers.org/ricegap/LOC_Os04g10010 | denotes | OsMAS |
| T90971 | 1069-1075 | http://identifiers.org/ricegap/LOC_Os02g36140 | denotes | OsKSL7 |
| T71217 | 1139-1146 | http://identifiers.org/ricegap/LOC_Os04g54474 | denotes | ostgap1 |
| T15374 | 1218-1225 | http://identifiers.org/ricegap/LOC_Os04g54474 | denotes | OsTGAP1 |
| T99265 | 1403-1409 | http://identifiers.org/ricegap/LOC_Os02g36140 | denotes | OsKSL7 |
| T31266 | 1487-1494 | http://identifiers.org/ricegap/LOC_Os04g54474 | denotes | OsTGAP1 |
| T53371 | 1557-1563 | http://identifiers.org/ricegap/LOC_Os07g09190 | denotes | OsDXS3 |
| T97731 | 1707-1714 | http://identifiers.org/ricegap/LOC_Os04g54474 | denotes | OsTGAP1 |
| T44594 | 0-7 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T31779 | 738-745 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T46142 | 883-890 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T96268 | 945-951 | http://identifiers.org/rapdb.locus/Os04g0178300 | denotes | OsCPS4 |
| T80317 | 953-959 | http://identifiers.org/rapdb.locus/Os04g0179700 | denotes | OsKSL4 |
| T92517 | 961-968 | http://identifiers.org/rapdb.locus/Os04g0180400 | denotes | CYP99A2 |
| T36615 | 970-977 | http://identifiers.org/rapdb.locus/Os04g0178400 | denotes | CYP99A3 |
| T40851 | 983-988 | http://identifiers.org/rapdb.locus/Os04g0179200 | denotes | OsMAS |
| T4835 | 1069-1075 | http://identifiers.org/rapdb.locus/Os02g0570400 | denotes | OsKSL7 |
| T56045 | 1139-1146 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | ostgap1 |
| T25462 | 1218-1225 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T96638 | 1403-1409 | http://identifiers.org/rapdb.locus/Os02g0570400 | denotes | OsKSL7 |
| T5433 | 1487-1494 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T60263 | 1557-1563 | http://identifiers.org/rapdb.locus/Os07g0190000 | denotes | OsDXS3 |
| T32873 | 1707-1714 | http://identifiers.org/rapdb.locus/Os04g0637000 | denotes | OsTGAP1 |
| T94278 | 0-7 | http://identifiers.org/uniprot/B7EMK6 | denotes | OsTGAP1 |
| T70147 | 0-7 | http://identifiers.org/uniprot/A0A0P0WFC8 | denotes | OsTGAP1 |
| T54173 | 738-745 | http://identifiers.org/uniprot/B7EMK6 | denotes | OsTGAP1 |
| T43702 | 738-745 | http://identifiers.org/uniprot/A0A0P0WFC8 | denotes | OsTGAP1 |
| T70346 | 883-890 | http://identifiers.org/uniprot/B7EMK6 | denotes | OsTGAP1 |
| T54982 | 883-890 | http://identifiers.org/uniprot/A0A0P0WFC8 | denotes | OsTGAP1 |
| T77586 | 945-951 | http://identifiers.org/uniprot/Q0JF02-3 | denotes | OsCPS4 |
| T37078 | 945-951 | http://identifiers.org/uniprot/Q0JF02 | denotes | OsCPS4 |
| T64479 | 953-959 | http://identifiers.org/uniprot/Q0JEZ8 | denotes | OsKSL4 |
| T4350 | 961-968 | http://identifiers.org/uniprot/Q7X7X4 | denotes | CYP99A2 |
| T84346 | 970-977 | http://identifiers.org/uniprot/Q0JF01 | denotes | CYP99A3 |
| T79645 | 983-988 | http://identifiers.org/uniprot/Q01M90 | denotes | OsMAS |
| T71470 | 1069-1075 | http://identifiers.org/uniprot/Q0E088 | denotes | OsKSL7 |
| T65473 | 1218-1225 | http://identifiers.org/uniprot/B7EMK6 | denotes | OsTGAP1 |
| T66432 | 1218-1225 | http://identifiers.org/uniprot/A0A0P0WFC8 | denotes | OsTGAP1 |
| T16 | 1403-1409 | http://identifiers.org/uniprot/Q0E088 | denotes | OsKSL7 |
| T17 | 1487-1494 | http://identifiers.org/uniprot/B7EMK6 | denotes | OsTGAP1 |
| T18 | 1487-1494 | http://identifiers.org/uniprot/A0A0P0WFC8 | denotes | OsTGAP1 |
| T19 | 1557-1563 | http://identifiers.org/uniprot/A4ZYX4 | denotes | OsDXS3 |
| T20 | 1707-1714 | http://identifiers.org/uniprot/B7EMK6 | denotes | OsTGAP1 |
| T21 | 1707-1714 | http://identifiers.org/uniprot/A0A0P0WFC8 | denotes | OsTGAP1 |
| M_0 | 1218-1240 | hunflair:NA:Gene | denotes | OsTGAP1-overexpressing |
| M_1 | 89-100 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_2 | 143-154 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_3 | 1653-1664 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_4 | 1808-1819 | hunflair:NA:Chemical | denotes | diterpenoid |
| M_5 | 970-977 | hunflair:NA:Gene | denotes | CYP99A3 |
| M_6 | 117-121 | hunflair:NA:Species | denotes | rice |
| M_7 | 215-219 | hunflair:NA:Species | denotes | rice |
| M_8 | 373-377 | hunflair:NA:Species | denotes | rice |
| M_9 | 1846-1850 | hunflair:NA:Species | denotes | rice |
| M_10 | 169-181 | hunflair:NA:Chemical | denotes | momilactones |
| M_11 | 343-355 | hunflair:NA:Chemical | denotes | momilactones |
| M_12 | 1007-1019 | hunflair:NA:Chemical | denotes | momilactones |
| M_13 | 1325-1337 | hunflair:NA:Chemical | denotes | momilactones |
| M_14 | 186-199 | hunflair:NA:Chemical | denotes | phytocassanes |
| M_15 | 1435-1448 | hunflair:NA:Chemical | denotes | phytocassanes |
| M_16 | 1820-1831 | hunflair:NA:Chemical | denotes | phytoalexin |
| M_17 | 953-959 | hunflair:NA:Gene | denotes | OsKSL4 |
| M_18 | 101-113 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_19 | 155-167 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_20 | 1665-1677 | hunflair:NA:Chemical | denotes | phytoalexins |
| M_21 | 770-781 | hunflair:NA:Chemical | denotes | momilactone |
| M_22 | 1928-1939 | hunflair:NA:Chemical | denotes | momilactone |
| M_23 | 89-113 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_24 | 143-167 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_25 | 1653-1677 | hunflair:NA:Chemical | denotes | diterpenoid phytoalexins |
| M_26 | 983-988 | hunflair:NA:Gene | denotes | OsMAS |
| M_27 | 945-951 | hunflair:NA:Gene | denotes | OsCPS4 |
| M_28 | 0-7 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_29 | 738-745 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_30 | 883-890 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_31 | 1218-1225 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_32 | 1487-1494 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_33 | 1707-1714 | hunflair:NA:Gene | denotes | OsTGAP1 |
| M_34 | 1571-1597 | hunflair:NA:Chemical | denotes | methylerythritol phosphate |
| M_35 | 1557-1563 | hunflair:NA:Gene | denotes | OsDXS3 |
| M_36 | 1139-1146 | hunflair:NA:Gene | denotes | ostgap1 |
| M_37 | 1069-1075 | hunflair:NA:Gene | denotes | OsKSL7 |
| M_38 | 1403-1409 | hunflair:NA:Gene | denotes | OsKSL7 |
| M_39 | 1080-1092 | hunflair:NA:Chemical | denotes | phytocassane |
| M_40 | 1164-1176 | hunflair:NA:Chemical | denotes | phytocassane |
| M_41 | 695-736 | hunflair:NA:Gene | denotes | basic leucine zipper transcription factor |
| M_42 | 961-968 | hunflair:NA:Gene | denotes | CYP99A2 |
| M_43 | 11-36 | hunflair:NA:Gene | denotes | bZIP transcription factor |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-7 | gene | denotes | OsTGAP1 |
| T2 | 738-745 | gene | denotes | OsTGAP1 |
| T3 | 1069-1075 | gene | denotes | OsKSL7 |
| T4 | 1139-1146 | gene | denotes | ostgap1 |
| T5 | 1218-1225 | gene | denotes | OsTGAP1 |
| T6 | 1403-1409 | gene | denotes | OsKSL7 |
| T7 | 1487-1494 | gene | denotes | OsTGAP1 |
| T8 | 1557-1563 | gene | denotes | OsDXS3 |
| T9 | 1707-1714 | gene | denotes | OsTGAP1 |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 653-659 | Glycan | denotes | chitin | https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 653-659 | Glycan | denotes | chitin | https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY |
GlyCosmos15-Taxon
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 117-121 | Organism | denotes | rice | 4530 |
| T2 | 215-219 | Organism | denotes | rice | 4530 |
| T3 | 373-377 | Organism | denotes | rice | 4530 |
| T4 | 1846-1850 | Organism | denotes | rice | 4530 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 378-388 | Body_part | denotes | chromosome | http://purl.obolibrary.org/obo/GO_0005694 |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-122 | Sentence | denotes | OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. |
| T2 | 123-295 | Sentence | denotes | Production of major diterpenoid phytoalexins, momilactones and phytocassanes, is induced in rice upon recognition of pathogenic invasion as plant defense-related compounds. |
| T3 | 296-453 | Sentence | denotes | We recently showed that biosynthetic genes for momilactones are clustered on rice chromosome 4 and co-expressed after elicitation, mimicking pathogen attack. |
| T4 | 454-634 | Sentence | denotes | Because genes for most metabolic pathways in plants are not organized in gene clusters, examination of the mechanism(s) regulating the expression of such clustered genes is needed. |
| T5 | 635-857 | Sentence | denotes | Here, we report a chitin oligosaccharide elicitor-inducible basic leucine zipper transcription factor, OsTGAP1, which is essential for momilactone biosynthesis and regulates the expression of the five genes in the cluster. |
| T6 | 858-1044 | Sentence | denotes | The knock-out mutant for OsTGAP1 had almost no expression of the five clustered genes (OsCPS4, OsKSL4, CYP99A2, CYP99A3, and OsMAS) or production of momilactones upon elicitor treatment. |
| T7 | 1045-1205 | Sentence | denotes | Inductive expression of OsKSL7 for phytocassane biosynthesis was also largely affected in the ostgap1 mutant, although phytocassane accumulation still occurred. |
| T8 | 1206-1366 | Sentence | denotes | Conversely, OsTGAP1-overexpressing lines exhibited enhanced expression of the clustered genes and hyperaccumulation of momilactones in response to the elicitor. |
| T9 | 1367-1467 | Sentence | denotes | Furthermore, enhanced expression of OsKSL7 and hyperaccumulation of phytocassanes was also observed. |
| T10 | 1468-1678 | Sentence | denotes | We also found that OsTGAP1 overexpression can influence transcriptional up-regulation of OsDXS3 in the methylerythritol phosphate pathway, eventually leading to inductive production of diterpenoid phytoalexins. |
| T11 | 1679-1953 | Sentence | denotes | These results indicate that OsTGAP1 functions as a key regulator of the coordinated transcription of genes involved in inductive diterpenoid phytoalexin production in rice and mainly exerts an essential role on expression of the clustered genes for momilactone biosynthesis. |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-122 | Sentence | denotes | OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. |
| T2 | 123-295 | Sentence | denotes | Production of major diterpenoid phytoalexins, momilactones and phytocassanes, is induced in rice upon recognition of pathogenic invasion as plant defense-related compounds. |
| T3 | 296-453 | Sentence | denotes | We recently showed that biosynthetic genes for momilactones are clustered on rice chromosome 4 and co-expressed after elicitation, mimicking pathogen attack. |
| T4 | 454-634 | Sentence | denotes | Because genes for most metabolic pathways in plants are not organized in gene clusters, examination of the mechanism(s) regulating the expression of such clustered genes is needed. |
| T5 | 635-857 | Sentence | denotes | Here, we report a chitin oligosaccharide elicitor-inducible basic leucine zipper transcription factor, OsTGAP1, which is essential for momilactone biosynthesis and regulates the expression of the five genes in the cluster. |
| T6 | 858-1044 | Sentence | denotes | The knock-out mutant for OsTGAP1 had almost no expression of the five clustered genes (OsCPS4, OsKSL4, CYP99A2, CYP99A3, and OsMAS) or production of momilactones upon elicitor treatment. |
| T7 | 1045-1205 | Sentence | denotes | Inductive expression of OsKSL7 for phytocassane biosynthesis was also largely affected in the ostgap1 mutant, although phytocassane accumulation still occurred. |
| T8 | 1206-1366 | Sentence | denotes | Conversely, OsTGAP1-overexpressing lines exhibited enhanced expression of the clustered genes and hyperaccumulation of momilactones in response to the elicitor. |
| T9 | 1367-1467 | Sentence | denotes | Furthermore, enhanced expression of OsKSL7 and hyperaccumulation of phytocassanes was also observed. |
| T10 | 1468-1678 | Sentence | denotes | We also found that OsTGAP1 overexpression can influence transcriptional up-regulation of OsDXS3 in the methylerythritol phosphate pathway, eventually leading to inductive production of diterpenoid phytoalexins. |
| T11 | 1679-1953 | Sentence | denotes | These results indicate that OsTGAP1 functions as a key regulator of the coordinated transcription of genes involved in inductive diterpenoid phytoalexin production in rice and mainly exerts an essential role on expression of the clustered genes for momilactone biosynthesis. |
GlyCosmos15-FMA
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 378-388 | Body_part | denotes | chromosome | FMA:67093 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 117-121 | OrganismTaxon | denotes | rice | 4530 |
| T2 | 215-219 | OrganismTaxon | denotes | rice | 4530 |
| T3 | 373-377 | OrganismTaxon | denotes | rice | 4530 |
| T4 | 1846-1850 | OrganismTaxon | denotes | rice | 4530 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 378-388 | Body_part | denotes | chromosome | http://purl.obolibrary.org/obo/GO_0005694 |