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PubMed:1956769 JSONTXT

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PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 112-128 DiseaseOrPhenotypicFeature denotes immunodeficiency 0021094
T2 271-287 DiseaseOrPhenotypicFeature denotes immunodeficiency 0021094
T3 575-589 DiseaseOrPhenotypicFeature denotes retinoblastoma 0008380

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 18-53 protein denotes transcriptional suppressor proteins
T2 71-98 DNA denotes negative regulatory element
T3 228-255 DNA denotes negative regulatory element
T4 257-260 DNA denotes NRE
T5 351-383 cell_line denotes virus-infected human T cell line
T6 415-446 DNA denotes novel dyad symmetrical sequence
T7 546-561 DNA denotes promoter region
T8 569-594 DNA denotes human retinoblastoma gene
T9 654-689 cell_line denotes virus-uninfected human T cell lines
T10 694-704 cell_line denotes HeLa cells
T11 773-807 DNA denotes putative AP-1 recognition sequence
T12 832-835 DNA denotes NRE
T13 884-893 DNA denotes AP-1 site
T14 935-947 DNA denotes binding site
T15 987-1008 DNA denotes heterologous promoter
T16 1116-1140 protein denotes novel negative regulator

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-142 Sentence denotes Identification of transcriptional suppressor proteins that bind to the negative regulatory element of the human immunodeficiency virus type 1.
S2 143-384 Sentence denotes Two different proteins which independently bound to neighboring sequences within the negative regulatory element (NRE) of human immunodeficiency virus type 1 (HIV-1) were detected in the nuclear extract of a virus-infected human T cell line.
S3 385-447 Sentence denotes One of the factors bound to a novel dyad symmetrical sequence.
S4 448-595 Sentence denotes This sequence is well conserved in various HIV-1 isolates and partial homology was found with the promoter region of the human retinoblastoma gene.
S5 596-744 Sentence denotes Similar DNA binding activity was detected in a variety of virus-uninfected human T cell lines and HeLa cells by means of a gel mobility shift assay.
S6 745-836 Sentence denotes The other factor bound to a putative AP-1 recognition sequence predicted for the HIV-1 NRE.
S7 837-894 Sentence denotes However, this factor did not bind to a typical AP-1 site.
S8 895-1079 Sentence denotes The insertion of multiple copies of the binding site for the former or latter factor into a heterologous promoter reduced the promoter activity to one-tenth or one-third, respectively.
S9 1080-1158 Sentence denotes Thus, each factor may function as a novel negative regulator of transcription.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 18-53 NP denotes transcriptional suppressor proteins
C2 54-58 NP denotes that
C4 67-98 NP denotes the negative regulatory element
C3 67-141 NP denotes the negative regulatory element of the human immunodeficiency virus type 1
C5 143-165 NP denotes Two different proteins
C6 166-171 NP denotes which
C8 224-261 NP denotes the negative regulatory element (NRE)
C7 224-308 NP denotes the negative regulatory element (NRE) of human immunodeficiency virus type 1 (HIV-1)
C9 385-403 NP denotes One of the factors
C10 413-446 NP denotes a novel dyad symmetrical sequence
C11 448-461 NP denotes This sequence
C12 745-761 NP denotes The other factor
C14 832-835 NP denotes NRE
C13 822-835 NP denotes the HIV-1 NRE
C15 846-857 NP denotes this factor
C16 952-962 NP denotes the former
C17 966-979 NP denotes latter factor
C18 1114-1140 NP denotes a novel negative regulator
R1 C2 C1 coref-relat that,transcriptional suppressor proteins
R2 C6 C5 coref-relat which,Two different proteins
R3 C8 C4 coref-ident the negative regulatory element (NRE),the negative regulatory element
R4 C7 C3 coref-ident the negative regulatory element (NRE) of human immunodeficiency virus type 1 (HIV-1),the negative regulatory element of the human immunodeficiency virus type 1
R5 C11 C10 coref-ident This sequence,a novel dyad symmetrical sequence
R6 C14 C8 coref-ident NRE,the negative regulatory element (NRE)
R7 C13 C7 coref-ident the HIV-1 NRE,the negative regulatory element (NRE) of human immunodeficiency virus type 1 (HIV-1)
R8 C15 C12 coref-ident this factor,The other factor
R9 C16 C9 coref-ident the former,One of the factors
R10 C17 C15 coref-ident latter factor,this factor
R11 C18 C14 coref-ident a novel negative regulator,NRE

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 18-53 protein_family_or_group denotes transcriptional suppressor proteins
T2 71-98 DNA_domain_or_region denotes negative regulatory element
T3 106-141 virus denotes human immunodeficiency virus type 1
T4 195-216 other_name denotes neighboring sequences
T5 228-255 DNA_domain_or_region denotes negative regulatory element
T6 257-260 DNA_domain_or_region denotes NRE
T7 265-300 virus denotes human immunodeficiency virus type 1
T8 302-307 virus denotes HIV-1
T9 351-383 cell_line denotes virus-infected human T cell line
T10 415-446 DNA_domain_or_region denotes novel dyad symmetrical sequence
T11 491-496 virus denotes HIV-1
T12 546-561 DNA_domain_or_region denotes promoter region
T13 569-594 DNA_domain_or_region denotes human retinoblastoma gene
T14 604-624 other_name denotes DNA binding activity
T15 654-689 cell_line denotes virus-uninfected human T cell lines
T16 694-704 cell_line denotes HeLa cells
T17 719-743 other_name denotes gel mobility shift assay
T18 773-807 DNA_domain_or_region denotes putative AP-1 recognition sequence
T19 826-831 virus denotes HIV-1
T20 832-835 DNA_domain_or_region denotes NRE
T21 884-893 DNA_domain_or_region denotes AP-1 site
T22 935-947 DNA_domain_or_region denotes binding site
T23 987-1008 DNA_domain_or_region denotes heterologous promoter
T24 1021-1038 other_name denotes promoter activity
T25 1116-1140 protein_family_or_group denotes novel negative regulator
T26 1144-1157 other_name denotes transcription