PubMed:19398216 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/19398216","sourcedb":"PubMed","sourceid":"19398216","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/19398216","text":"Low-risk human papillomavirus type 6 DNA load and integration in cervical samples from women with squamous intraepithelial lesions.\nBACKGROUND: The association between human papillomavirus (HPV) viral load and high-grade squamous intraepithelial lesion (HSIL) of the uterine cervix has been demonstrated for high-risk HPV-16 but has not been investigated for low-risk HPV types.\nOBJECTIVE: To determine the association between the presence of low-grade SIL (LSIL) and viral load of low-risk HPV type 6.\nSTUDY DESIGN: 107 HPV-6-positive cytobrush samples collected from 90 women (67 without SIL, 11 with LSIL, 5 with HSIL, 6 with SIL of unknown grade and 1 with a smear with LSIL and a normal colposcopy) were analyzed for their content of HPV-6 DNA.\nMETHODS: HPV-6 E6 and E2 DNA loads were measured in the cytobrush samples with two real-time PCR assays. HPV-6 integration was confirmed with restriction-site PCR.\nRESULTS: HPV-6 DNA in cervical samples ranged from 1.8 x 10(2) to 4.25 x 10(8) copies per microg of cellular DNA. HPV-6 E6 DNA loads were higher in women with LSIL, with or without co-infection with high-risk HPV types, than in women without SIL (p=0.03). HPV-6 loads greater than 8.76 x 10(6)copies per microgDNA, corresponding to the mean HPV-6 load measured in women with LSIL, were more frequently detected in these women with LSIL than in women without LSIL, controlling for age (odds ratio 13.5, 95% confidence interval 1.1-172.4). Although 10 samples generated HPV-6 E6/E2 ratios above 2, there was no evidence of integration of HPV-6 by restriction-site PCR.\nCONCLUSION: Samples from women with LSIL contained higher HPV-6 loads than women without SIL. HPV-6 DNA was not integrated into cellular DNA in these samples.","tracks":[{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":267,"end":281},"obj":"http://purl.obolibrary.org/obo/UBERON_0000002"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"performance-test"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":590,"end":593},"obj":"gene:6491"},{"id":"T1","span":{"begin":603,"end":607},"obj":"disease:C1302773"},{"id":"T2","span":{"begin":590,"end":593},"obj":"gene:6490"},{"id":"T3","span":{"begin":603,"end":607},"obj":"disease:C1302773"},{"id":"T4","span":{"begin":1156,"end":1159},"obj":"gene:6491"},{"id":"T5","span":{"begin":1095,"end":1107},"obj":"disease:C0275524"},{"id":"T6","span":{"begin":1156,"end":1159},"obj":"gene:6490"},{"id":"T7","span":{"begin":1095,"end":1107},"obj":"disease:C0275524"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"},{"id":"R3","pred":"associated_with","subj":"T4","obj":"T5"},{"id":"R4","pred":"associated_with","subj":"T6","obj":"T7"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"},{"subj":"T4","pred":"source","obj":"DisGeNET"},{"subj":"T5","pred":"source","obj":"DisGeNET"},{"subj":"T6","pred":"source","obj":"DisGeNET"},{"subj":"T7","pred":"source","obj":"DisGeNET"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":131},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":132,"end":143},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":144,"end":378},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":379,"end":389},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":390,"end":502},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":503,"end":516},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":517,"end":749},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":750,"end":854},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":855,"end":913},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":914,"end":1027},"obj":"Sentence"},{"id":"TextSentencer_T11","span":{"begin":1028,"end":1169},"obj":"Sentence"},{"id":"TextSentencer_T12","span":{"begin":1170,"end":1451},"obj":"Sentence"},{"id":"TextSentencer_T13","span":{"begin":1452,"end":1580},"obj":"Sentence"},{"id":"TextSentencer_T14","span":{"begin":1581,"end":1592},"obj":"Sentence"},{"id":"TextSentencer_T15","span":{"begin":1593,"end":1674},"obj":"Sentence"},{"id":"TextSentencer_T16","span":{"begin":1675,"end":1739},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":131},"obj":"Sentence"},{"id":"T2","span":{"begin":132,"end":143},"obj":"Sentence"},{"id":"T3","span":{"begin":144,"end":378},"obj":"Sentence"},{"id":"T4","span":{"begin":379,"end":389},"obj":"Sentence"},{"id":"T5","span":{"begin":390,"end":502},"obj":"Sentence"},{"id":"T6","span":{"begin":503,"end":516},"obj":"Sentence"},{"id":"T7","span":{"begin":517,"end":749},"obj":"Sentence"},{"id":"T8","span":{"begin":750,"end":854},"obj":"Sentence"},{"id":"T9","span":{"begin":855,"end":913},"obj":"Sentence"},{"id":"T10","span":{"begin":914,"end":1027},"obj":"Sentence"},{"id":"T11","span":{"begin":1028,"end":1169},"obj":"Sentence"},{"id":"T12","span":{"begin":1170,"end":1451},"obj":"Sentence"},{"id":"T13","span":{"begin":1452,"end":1580},"obj":"Sentence"},{"id":"T14","span":{"begin":1581,"end":1592},"obj":"Sentence"},{"id":"T15","span":{"begin":1593,"end":1674},"obj":"Sentence"},{"id":"T16","span":{"begin":1675,"end":1739},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T7","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T8","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T9","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T10","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T11","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T12","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T13","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T14","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T15","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T16","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T11","pred":"source","obj":"sentences"},{"subj":"T12","pred":"source","obj":"sentences"},{"subj":"T13","pred":"source","obj":"sentences"},{"subj":"T14","pred":"source","obj":"sentences"},{"subj":"T15","pred":"source","obj":"sentences"},{"subj":"T16","pred":"source","obj":"sentences"}]},{"project":"UBERON-AE","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":267,"end":281},"obj":"http://purl.obolibrary.org/obo/UBERON_0000002"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"UBERON-AE"}]},{"project":"DisGeNet-2017-sample","denotations":[{"id":"T2295","span":{"begin":1670,"end":1673},"obj":"gene:6490"},{"id":"T2296","span":{"begin":1617,"end":1621},"obj":"disease:C1302773"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T2295","obj":"T2296"},{"id":"R2","pred":"associated_with","subj":"T2295","obj":"T2296"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T2295","pred":"source","obj":"DisGeNet-2017-sample"},{"subj":"T2296","pred":"source","obj":"DisGeNet-2017-sample"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"19398216-10#77#80#gene6490","span":{"begin":1670,"end":1673},"obj":"gene6490"},{"id":"19398216-10#77#80#gene6491","span":{"begin":1670,"end":1673},"obj":"gene6491"},{"id":"19398216-10#24#28#diseaseC1302773","span":{"begin":1617,"end":1621},"obj":"diseaseC1302773"},{"id":"19398216-7#128#131#gene6490","span":{"begin":1156,"end":1159},"obj":"gene6490"},{"id":"19398216-7#128#131#gene6491","span":{"begin":1156,"end":1159},"obj":"gene6491"},{"id":"19398216-7#67#79#diseaseC0275524","span":{"begin":1095,"end":1107},"obj":"diseaseC0275524"}],"relations":[{"id":"77#80#gene649024#28#diseaseC1302773","pred":"associated_with","subj":"19398216-10#77#80#gene6490","obj":"19398216-10#24#28#diseaseC1302773"},{"id":"77#80#gene649124#28#diseaseC1302773","pred":"associated_with","subj":"19398216-10#77#80#gene6491","obj":"19398216-10#24#28#diseaseC1302773"},{"id":"128#131#gene649067#79#diseaseC0275524","pred":"associated_with","subj":"19398216-7#128#131#gene6490","obj":"19398216-7#67#79#diseaseC0275524"},{"id":"128#131#gene649167#79#diseaseC0275524","pred":"associated_with","subj":"19398216-7#128#131#gene6491","obj":"19398216-7#67#79#diseaseC0275524"}],"attributes":[{"subj":"19398216-10#77#80#gene6490","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19398216-10#77#80#gene6491","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19398216-10#24#28#diseaseC1302773","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19398216-7#128#131#gene6490","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19398216-7#128#131#gene6491","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19398216-7#67#79#diseaseC0275524","pred":"source","obj":"DisGeNET5_gene_disease"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"performance-test","color":"#93ecd6","default":true},{"id":"DisGeNET","color":"#ecbc93"},{"id":"sentences","color":"#a293ec"},{"id":"UBERON-AE","color":"#9eec93"},{"id":"DisGeNet-2017-sample","color":"#ec93b8"},{"id":"DisGeNET5_gene_disease","color":"#93d2ec"}]}]}}