PubMed:19386898
Annnotations
Glycosmos6-MAT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 55-60 | http://purl.obolibrary.org/obo/MAT_0000098 | denotes | brain |
T2 | 65-71 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
T3 | 858-863 | http://purl.obolibrary.org/obo/MAT_0000098 | denotes | brain |
T4 | 868-874 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
T5 | 923-928 | http://purl.obolibrary.org/obo/MAT_0000098 | denotes | brain |
T6 | 972-978 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
T7 | 1065-1071 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
TextSentencer_T1 | 0-98 | Sentence | denotes | Glycosylation-related gene expression profiling in the brain and spleen of scrapie-affected mouse. |
TextSentencer_T2 | 99-257 | Sentence | denotes | A central event in the formation of infectious prions is the conformational change of a host-encoded glycoprotein, PrP(C), into a pathogenic isoform, PrP(Sc). |
TextSentencer_T3 | 258-329 | Sentence | denotes | The molecular requirements for efficient PrP conversion remain unknown. |
TextSentencer_T4 | 330-462 | Sentence | denotes | Altered glycosylation has been linked to various pathologies and the N-glycans harbored by two prion protein isoforms are different. |
TextSentencer_T5 | 463-875 | Sentence | denotes | In order to search for glycosylation-related genes that could mark prion infection, we used a glycosylation-dedicated microarray that allowed the simultaneous analysis of the expression of 165 glycosylation-related genes encoding proteins of the glycosyltransferase, glycosidase, lectin, and sulfotransferase families to compare the gene expression profiles of normal and scrapie-infected mouse brain and spleen. |
TextSentencer_T6 | 876-964 | Sentence | denotes | Eight genes were found upregulated in "scrapie brain" at the final state of the disease. |
TextSentencer_T7 | 965-1023 | Sentence | denotes | In the spleen, five genes presented a modified expression. |
TextSentencer_T8 | 1024-1131 | Sentence | denotes | Three genes were also upregulated in the spleen of infected mice, and two (Pigq and St3gal5) downregulated. |
TextSentencer_T9 | 1132-1229 | Sentence | denotes | All changes were confirmed by qPCR and biochemical analyses applied to Pigq and St3gal5 proteins. |
T1 | 0-98 | Sentence | denotes | Glycosylation-related gene expression profiling in the brain and spleen of scrapie-affected mouse. |
T2 | 99-257 | Sentence | denotes | A central event in the formation of infectious prions is the conformational change of a host-encoded glycoprotein, PrP(C), into a pathogenic isoform, PrP(Sc). |
T3 | 258-329 | Sentence | denotes | The molecular requirements for efficient PrP conversion remain unknown. |
T4 | 330-462 | Sentence | denotes | Altered glycosylation has been linked to various pathologies and the N-glycans harbored by two prion protein isoforms are different. |
T5 | 463-875 | Sentence | denotes | In order to search for glycosylation-related genes that could mark prion infection, we used a glycosylation-dedicated microarray that allowed the simultaneous analysis of the expression of 165 glycosylation-related genes encoding proteins of the glycosyltransferase, glycosidase, lectin, and sulfotransferase families to compare the gene expression profiles of normal and scrapie-infected mouse brain and spleen. |
T6 | 876-964 | Sentence | denotes | Eight genes were found upregulated in "scrapie brain" at the final state of the disease. |
T7 | 965-1023 | Sentence | denotes | In the spleen, five genes presented a modified expression. |
T8 | 1024-1131 | Sentence | denotes | Three genes were also upregulated in the spleen of infected mice, and two (Pigq and St3gal5) downregulated. |
T9 | 1132-1229 | Sentence | denotes | All changes were confirmed by qPCR and biochemical analyses applied to Pigq and St3gal5 proteins. |
T1 | 0-98 | Sentence | denotes | Glycosylation-related gene expression profiling in the brain and spleen of scrapie-affected mouse. |
T2 | 99-257 | Sentence | denotes | A central event in the formation of infectious prions is the conformational change of a host-encoded glycoprotein, PrP(C), into a pathogenic isoform, PrP(Sc). |
T3 | 258-329 | Sentence | denotes | The molecular requirements for efficient PrP conversion remain unknown. |
T4 | 330-462 | Sentence | denotes | Altered glycosylation has been linked to various pathologies and the N-glycans harbored by two prion protein isoforms are different. |
T5 | 463-875 | Sentence | denotes | In order to search for glycosylation-related genes that could mark prion infection, we used a glycosylation-dedicated microarray that allowed the simultaneous analysis of the expression of 165 glycosylation-related genes encoding proteins of the glycosyltransferase, glycosidase, lectin, and sulfotransferase families to compare the gene expression profiles of normal and scrapie-infected mouse brain and spleen. |
T6 | 876-964 | Sentence | denotes | Eight genes were found upregulated in "scrapie brain" at the final state of the disease. |
T7 | 965-1023 | Sentence | denotes | In the spleen, five genes presented a modified expression. |
T8 | 1024-1131 | Sentence | denotes | Three genes were also upregulated in the spleen of infected mice, and two (Pigq and St3gal5) downregulated. |
T9 | 1132-1229 | Sentence | denotes | All changes were confirmed by qPCR and biochemical analyses applied to Pigq and St3gal5 proteins. |
ICD10
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 956-978 | http://purl.bioontology.org/ontology/ICD10/D73.9 | denotes | disease. In the spleen |
T2 | 956-978 | http://purl.bioontology.org/ontology/ICD10/D73 | denotes | disease. In the spleen |
GlycoBiology-FMA
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
_T1 | 22-26 | FMAID:198663 | denotes | gene |
_T2 | 38-50 | FMAID:165431 | denotes | profiling in |
_T3 | 38-50 | FMAID:67123 | denotes | profiling in |
_T4 | 55-60 | FMAID:146514 | denotes | brain |
_T5 | 55-60 | FMAID:50801 | denotes | brain |
_T6 | 65-71 | FMAID:93671 | denotes | spleen |
_T7 | 65-71 | FMAID:7196 | denotes | spleen |
_T8 | 65-71 | FMAID:188495 | denotes | spleen |
_T9 | 101-108 | FMAID:242678 | denotes | central |
_T10 | 101-108 | FMAID:30328 | denotes | central |
_T11 | 101-108 | FMAID:174816 | denotes | central |
_T12 | 200-212 | FMAID:62925 | denotes | glycoprotein |
_T13 | 200-212 | FMAID:167256 | denotes | glycoprotein |
_T14 | 431-438 | FMAID:165447 | denotes | protein |
_T15 | 431-438 | FMAID:67257 | denotes | protein |
_T16 | 508-513 | FMAID:198663 | denotes | genes |
_T17 | 678-683 | FMAID:198663 | denotes | genes |
_T18 | 693-701 | FMAID:67257 | denotes | proteins |
_T19 | 693-701 | FMAID:165447 | denotes | proteins |
_T20 | 796-800 | FMAID:198663 | denotes | gene |
_T21 | 858-863 | FMAID:146514 | denotes | brain |
_T22 | 858-863 | FMAID:50801 | denotes | brain |
_T23 | 868-874 | FMAID:188495 | denotes | spleen |
_T24 | 868-874 | FMAID:7196 | denotes | spleen |
_T25 | 868-874 | FMAID:93671 | denotes | spleen |
_T26 | 882-887 | FMAID:198663 | denotes | genes |
_T27 | 923-928 | FMAID:50801 | denotes | brain |
_T28 | 923-928 | FMAID:146514 | denotes | brain |
_T29 | 972-978 | FMAID:93671 | denotes | spleen |
_T30 | 972-978 | FMAID:188495 | denotes | spleen |
_T31 | 972-978 | FMAID:7196 | denotes | spleen |
_T32 | 985-990 | FMAID:198663 | denotes | genes |
_T33 | 1030-1035 | FMAID:198663 | denotes | genes |
_T34 | 1065-1071 | FMAID:93671 | denotes | spleen |
_T35 | 1065-1071 | FMAID:188495 | denotes | spleen |
_T36 | 1065-1071 | FMAID:7196 | denotes | spleen |
_T37 | 1220-1228 | FMAID:165447 | denotes | proteins |
_T38 | 1220-1228 | FMAID:67257 | denotes | proteins |
uniprot-mouse
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1108-1115 | http://www.uniprot.org/uniprot/Q9QWF9 | denotes | St3gal5 |
T2 | 1212-1219 | http://www.uniprot.org/uniprot/Q9QWF9 | denotes | St3gal5 |
GlycoBiology-NCBITAXON
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 14-21 | http://purl.bioontology.org/ontology/NCBITAXON/353209 | denotes | related |
T2 | 109-114 | http://purl.bioontology.org/ontology/STY/T051 | denotes | event |
T3 | 146-152 | http://purl.bioontology.org/ontology/NCBITAXON/94464 | denotes | prions |
T4 | 146-152 | http://purl.bioontology.org/ontology/NCBITAXON/94193 | denotes | prions |
T5 | 425-430 | http://purl.bioontology.org/ontology/NCBITAXON/94464 | denotes | prion |
T6 | 425-430 | http://purl.bioontology.org/ontology/NCBITAXON/94193 | denotes | prion |
T7 | 500-507 | http://purl.bioontology.org/ontology/NCBITAXON/353209 | denotes | related |
T8 | 530-535 | http://purl.bioontology.org/ontology/NCBITAXON/94193 | denotes | prion |
T9 | 530-535 | http://purl.bioontology.org/ontology/NCBITAXON/94464 | denotes | prion |
T10 | 670-677 | http://purl.bioontology.org/ontology/NCBITAXON/353209 | denotes | related |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-13 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | Glycosylation |
T2 | 338-351 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T3 | 486-499 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T4 | 557-570 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T5 | 656-669 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T6 | 22-37 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
T7 | 796-811 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
T8 | 122-131 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 187-191 | http://purl.obolibrary.org/obo/GO_0018995 | denotes | host |
UBERON-AE
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 55-60 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
T2 | 858-863 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
T3 | 923-928 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
T4 | 65-71 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
T5 | 868-874 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
T6 | 972-978 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
T7 | 1065-1071 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
T8 | 101-108 | http://purl.obolibrary.org/obo/UBERON_0012131 | denotes | central |
GlycoBiology-MAT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 55-60 | http://purl.obolibrary.org/obo/MAT_0000098 | denotes | brain |
T2 | 65-71 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
T3 | 858-863 | http://purl.obolibrary.org/obo/MAT_0000098 | denotes | brain |
T4 | 868-874 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
T5 | 923-928 | http://purl.obolibrary.org/obo/MAT_0000098 | denotes | brain |
T6 | 972-978 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
T7 | 1065-1071 | http://purl.obolibrary.org/obo/MAT_0000085 | denotes | spleen |
GlycoBiology-Motifs
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 399-408 | http://rdf.glycoinfo.org/glycan/G00027MO | denotes | N-glycans |
GlyTouCan-IUPAC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
GlycanIUPAC_T1 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G41652MJ" | denotes | All |
GlycanIUPAC_T2 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G20761YC" | denotes | All |
GlycanIUPAC_T3 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G19807HM" | denotes | All |
GlycanIUPAC_T4 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G20351TE" | denotes | All |
GlycanIUPAC_T5 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G71957MR" | denotes | All |
GlycanIUPAC_T6 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G59040AE" | denotes | All |
GlycanIUPAC_T7 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G14987PW" | denotes | All |
GlycanIUPAC_T8 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G95064PC" | denotes | All |
GlycanIUPAC_T9 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G39143AQ" | denotes | All |
GlycanIUPAC_T10 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G65149OO" | denotes | All |
GlycanIUPAC_T11 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G02766SY" | denotes | All |
GlycanIUPAC_T12 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G26019KJ" | denotes | All |
GlycanIUPAC_T13 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G36429CZ" | denotes | All |
GlycanIUPAC_T14 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G89633TP" | denotes | All |
GlycanIUPAC_T15 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G28494FO" | denotes | All |
GlycanIUPAC_T16 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G06219CP" | denotes | All |
GlycanIUPAC_T17 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G44237SM" | denotes | All |
GlycanIUPAC_T18 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G57948RL" | denotes | All |
GlycanIUPAC_T19 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G64016DN" | denotes | All |
GlycanIUPAC_T20 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G14536PC" | denotes | All |
GlycanIUPAC_T21 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G14356FW" | denotes | All |
GlycanIUPAC_T22 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G34565UO" | denotes | All |
GlycanIUPAC_T23 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G67124MW" | denotes | All |
GlycanIUPAC_T24 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G71457ZU" | denotes | All |
GlycanIUPAC_T25 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G55228VZ" | denotes | All |
GlycanIUPAC_T26 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G31034MJ" | denotes | All |
GlycanIUPAC_T27 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G25776IP" | denotes | All |
GlycanIUPAC_T28 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G64442BV" | denotes | All |
GlycanIUPAC_T29 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G57018LE" | denotes | All |
GlycanIUPAC_T30 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G61761GX" | denotes | All |
GlycanIUPAC_T31 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G76318UX" | denotes | All |
GlycanIUPAC_T32 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G61906ER" | denotes | All |
GlycanIUPAC_T33 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G68723GR" | denotes | All |
GlycanIUPAC_T34 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G19540LE" | denotes | All |
GlycanIUPAC_T35 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G74944PO" | denotes | All |
GlycanIUPAC_T36 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G89489ZJ" | denotes | All |
GlycanIUPAC_T37 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G04434YU" | denotes | All |
GlycanIUPAC_T38 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G21450PB" | denotes | All |
GlycanIUPAC_T39 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G93629QY" | denotes | All |
GlycanIUPAC_T40 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G02603TR" | denotes | All |
GlycanIUPAC_T41 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G40280JP" | denotes | All |
GlycanIUPAC_T42 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G95259IC" | denotes | All |
GlycanIUPAC_T43 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G26900FE" | denotes | All |
GlycanIUPAC_T44 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G21346KK" | denotes | All |
GlycanIUPAC_T45 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G62509FF" | denotes | All |
GlycanIUPAC_T46 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G83932AK" | denotes | All |
GlycanIUPAC_T47 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G96978IB" | denotes | All |
GlycanIUPAC_T48 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G34275DN" | denotes | All |
GlycanIUPAC_T49 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G07071JF" | denotes | All |
GlycanIUPAC_T50 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G80639QD" | denotes | All |
GlycanIUPAC_T51 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G99460PJ" | denotes | All |
GlycanIUPAC_T52 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G22024BZ" | denotes | All |
GlycanIUPAC_T53 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G74097ZY" | denotes | All |
GlycanIUPAC_T54 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G84439YP" | denotes | All |
GlycanIUPAC_T55 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G52207WQ" | denotes | All |
GlycanIUPAC_T56 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G90695MS" | denotes | All |
GlycanIUPAC_T57 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G50398QX" | denotes | All |
GlycanIUPAC_T58 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G12166ZT" | denotes | All |
GlycanIUPAC_T59 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G48368BR" | denotes | All |
GlycanIUPAC_T60 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G57407RW" | denotes | All |
GlycanIUPAC_T61 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G00386TY" | denotes | All |
GlycanIUPAC_T62 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G18723JK" | denotes | All |
GlycanIUPAC_T63 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G93757OR" | denotes | All |
GlycanIUPAC_T64 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G29006SI" | denotes | All |
GlycanIUPAC_T65 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G03099OQ" | denotes | All |
GlycanIUPAC_T66 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G53739OW" | denotes | All |
GlycanIUPAC_T67 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G70440ZO" | denotes | All |
GlycanIUPAC_T68 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G29951RR" | denotes | All |
GlycanIUPAC_T69 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G58402TI" | denotes | All |
GlycanIUPAC_T70 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G39875TP" | denotes | All |
GlycanIUPAC_T71 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G83439QV" | denotes | All |
GlycanIUPAC_T72 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G41762RC" | denotes | All |
GlycanIUPAC_T73 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G91604UI" | denotes | All |
GlycanIUPAC_T74 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G88447WE" | denotes | All |
GlycanIUPAC_T75 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G93634BS" | denotes | All |
GlycanIUPAC_T76 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G02587BH" | denotes | All |
GlycanIUPAC_T77 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G43511MX" | denotes | All |
GlycanIUPAC_T78 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G64958DH" | denotes | All |
GlycanIUPAC_T79 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G30384TR" | denotes | All |
GlycanIUPAC_T80 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G15624EX" | denotes | All |
GlycanIUPAC_T81 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G22706ST" | denotes | All |
GlycanIUPAC_T82 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G57408PI" | denotes | All |
GlycanIUPAC_T83 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G86403XX" | denotes | All |
GlycanIUPAC_T84 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G78043YB" | denotes | All |
GlycanIUPAC_T85 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G18952JK" | denotes | All |
GlycanIUPAC_T86 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G49020ND" | denotes | All |
GlycanIUPAC_T87 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G63590YW" | denotes | All |
GlycanIUPAC_T88 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G22793KS" | denotes | All |
GlycanIUPAC_T89 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G64134SS" | denotes | All |
GlycanIUPAC_T90 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G17338HY" | denotes | All |
GlycanIUPAC_T91 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G99745XF" | denotes | All |
GlycanIUPAC_T92 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G27782HN" | denotes | All |
GlycanIUPAC_T93 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G57496DC" | denotes | All |
GlycanIUPAC_T94 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G93169WB" | denotes | All |
GlycanIUPAC_T95 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G05518TD" | denotes | All |
GlycanIUPAC_T96 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G62603DN" | denotes | All |
GlycanIUPAC_T97 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G59574FS" | denotes | All |
GlycanIUPAC_T98 | 1132-1135 | "http://rdf.glycoinfo.org/glycan/G47567WC" | denotes | All |
performance-test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
PD-UBERON-AE-B_T1 | 55-60 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
PD-UBERON-AE-B_T2 | 858-863 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
PD-UBERON-AE-B_T3 | 923-928 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
PD-UBERON-AE-B_T4 | 65-71 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
PD-UBERON-AE-B_T5 | 868-874 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
PD-UBERON-AE-B_T6 | 972-978 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
PD-UBERON-AE-B_T7 | 1065-1071 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
PD-UBERON-AE-B_T8 | 101-108 | http://purl.obolibrary.org/obo/UBERON_0012131 | denotes | central |
mondo_disease
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 75-82 | Disease | denotes | scrapie | http://purl.obolibrary.org/obo/MONDO_0006961 |
T2 | 135-145 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
T3 | 536-545 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T4 | 835-842 | Disease | denotes | scrapie | http://purl.obolibrary.org/obo/MONDO_0006961 |
T5 | 915-922 | Disease | denotes | scrapie | http://purl.obolibrary.org/obo/MONDO_0006961 |
Lectin-Jamboree-Sentence
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-98 | Sentence | denotes | Glycosylation-related gene expression profiling in the brain and spleen of scrapie-affected mouse. |
T2 | 99-257 | Sentence | denotes | A central event in the formation of infectious prions is the conformational change of a host-encoded glycoprotein, PrP(C), into a pathogenic isoform, PrP(Sc). |
T3 | 258-329 | Sentence | denotes | The molecular requirements for efficient PrP conversion remain unknown. |
T4 | 330-462 | Sentence | denotes | Altered glycosylation has been linked to various pathologies and the N-glycans harbored by two prion protein isoforms are different. |
T5 | 463-875 | Sentence | denotes | In order to search for glycosylation-related genes that could mark prion infection, we used a glycosylation-dedicated microarray that allowed the simultaneous analysis of the expression of 165 glycosylation-related genes encoding proteins of the glycosyltransferase, glycosidase, lectin, and sulfotransferase families to compare the gene expression profiles of normal and scrapie-infected mouse brain and spleen. |
T6 | 876-964 | Sentence | denotes | Eight genes were found upregulated in "scrapie brain" at the final state of the disease. |
T7 | 965-1023 | Sentence | denotes | In the spleen, five genes presented a modified expression. |
T8 | 1024-1131 | Sentence | denotes | Three genes were also upregulated in the spleen of infected mice, and two (Pigq and St3gal5) downregulated. |
T9 | 1132-1229 | Sentence | denotes | All changes were confirmed by qPCR and biochemical analyses applied to Pigq and St3gal5 proteins. |
NCBITAXON
Id | Subject | Object | Predicate | Lexical cue | db_id |
---|---|---|---|---|---|
T1 | 92-97 | OrganismTaxon | denotes | mouse | 10088|10090 |
T3 | 852-857 | OrganismTaxon | denotes | mouse | 10088|10090 |
T5 | 1084-1088 | OrganismTaxon | denotes | mice | 10088 |
Anatomy-MAT
Id | Subject | Object | Predicate | Lexical cue | mat_id |
---|---|---|---|---|---|
T1 | 55-60 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/MAT_0000098 |
T2 | 65-71 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/MAT_0000085 |
T3 | 858-863 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/MAT_0000098 |
T4 | 868-874 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/MAT_0000085 |
T5 | 923-928 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/MAT_0000098 |
T6 | 972-978 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/MAT_0000085 |
T7 | 1065-1071 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/MAT_0000085 |
Anatomy-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 55-60 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955|http://purl.obolibrary.org/obo/UBERON_6110636 |
T3 | 65-71 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/UBERON_0002106 |
T4 | 858-863 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955|http://purl.obolibrary.org/obo/UBERON_6110636 |
T6 | 868-874 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/UBERON_0002106 |
T7 | 923-928 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955|http://purl.obolibrary.org/obo/UBERON_6110636 |
T9 | 972-978 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/UBERON_0002106 |
T10 | 1065-1071 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/UBERON_0002106 |