PubMed:19381883
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/19381883","sourcedb":"PubMed","sourceid":"19381883","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/19381883","text":"Novel GDAP1 mutation in a Turkish family with CMT2K (CMT2K with novel GDAP1 mutation).\nMutations in the ganglioside-induced differentiation-associated protein 1 gene (GDAP1) cause Charcot-Marie-Tooth type 2 (CMT2), a severe autosomal recessive form of neuropathy associated with axonal phenotypes. It has been screened in this study for the presence of mutations in the coding region of GDAP1, which maps to chromosome 8q21, in a family with CMT2. To date, 29 mutations in the GDAP1 have been reported in patients of different ethnic origins. Here, we report a novel missense mutation (c.836A\u003eG), and two polymorphisms: a silent variant (c.102G\u003eC), and a 5'-splice site mutation (IVS5+24C\u003eT) in GDPA1 gene identified in a five generation Turkish family with autosomal recessive CMT2.","tracks":[{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":6,"end":11},"obj":"gene:54332"},{"id":"T1","span":{"begin":46,"end":51},"obj":"disease:C1842983"},{"id":"T2","span":{"begin":6,"end":11},"obj":"gene:54332"},{"id":"T3","span":{"begin":53,"end":58},"obj":"disease:C1842983"},{"id":"T4","span":{"begin":70,"end":75},"obj":"gene:54332"},{"id":"T5","span":{"begin":46,"end":51},"obj":"disease:C1842983"},{"id":"T6","span":{"begin":70,"end":75},"obj":"gene:54332"},{"id":"T7","span":{"begin":53,"end":58},"obj":"disease:C1842983"},{"id":"T8","span":{"begin":167,"end":172},"obj":"gene:54332"},{"id":"T9","span":{"begin":180,"end":199},"obj":"disease:C0007959"},{"id":"T10","span":{"begin":104,"end":160},"obj":"gene:54332"},{"id":"T11","span":{"begin":252,"end":262},"obj":"disease:C0442874"},{"id":"T12","span":{"begin":104,"end":160},"obj":"gene:54332"},{"id":"T13","span":{"begin":180,"end":199},"obj":"disease:C0007959"},{"id":"T14","span":{"begin":167,"end":172},"obj":"gene:54332"},{"id":"T15","span":{"begin":252,"end":262},"obj":"disease:C0442874"},{"id":"T16","span":{"begin":208,"end":212},"obj":"gene:23095"},{"id":"T17","span":{"begin":180,"end":199},"obj":"disease:C0007959"},{"id":"T18","span":{"begin":208,"end":212},"obj":"gene:9587"},{"id":"T19","span":{"begin":180,"end":199},"obj":"disease:C0007959"},{"id":"T20","span":{"begin":208,"end":212},"obj":"gene:23095"},{"id":"T21","span":{"begin":252,"end":262},"obj":"disease:C0442874"},{"id":"T22","span":{"begin":208,"end":212},"obj":"gene:9587"},{"id":"T23","span":{"begin":252,"end":262},"obj":"disease:C0442874"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"},{"id":"R3","pred":"associated_with","subj":"T4","obj":"T5"},{"id":"R4","pred":"associated_with","subj":"T6","obj":"T7"},{"id":"R5","pred":"associated_with","subj":"T8","obj":"T9"},{"id":"R6","pred":"associated_with","subj":"T10","obj":"T11"},{"id":"R7","pred":"associated_with","subj":"T12","obj":"T13"},{"id":"R8","pred":"associated_with","subj":"T14","obj":"T15"},{"id":"R9","pred":"associated_with","subj":"T16","obj":"T17"},{"id":"R10","pred":"associated_with","subj":"T18","obj":"T19"},{"id":"R11","pred":"associated_with","subj":"T20","obj":"T21"},{"id":"R12","pred":"associated_with","subj":"T22","obj":"T23"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"},{"subj":"T4","pred":"source","obj":"DisGeNET"},{"subj":"T5","pred":"source","obj":"DisGeNET"},{"subj":"T6","pred":"source","obj":"DisGeNET"},{"subj":"T7","pred":"source","obj":"DisGeNET"},{"subj":"T8","pred":"source","obj":"DisGeNET"},{"subj":"T9","pred":"source","obj":"DisGeNET"},{"subj":"T10","pred":"source","obj":"DisGeNET"},{"subj":"T11","pred":"source","obj":"DisGeNET"},{"subj":"T12","pred":"source","obj":"DisGeNET"},{"subj":"T13","pred":"source","obj":"DisGeNET"},{"subj":"T14","pred":"source","obj":"DisGeNET"},{"subj":"T15","pred":"source","obj":"DisGeNET"},{"subj":"T16","pred":"source","obj":"DisGeNET"},{"subj":"T17","pred":"source","obj":"DisGeNET"},{"subj":"T18","pred":"source","obj":"DisGeNET"},{"subj":"T19","pred":"source","obj":"DisGeNET"},{"subj":"T20","pred":"source","obj":"DisGeNET"},{"subj":"T21","pred":"source","obj":"DisGeNET"},{"subj":"T22","pred":"source","obj":"DisGeNET"},{"subj":"T23","pred":"source","obj":"DisGeNET"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":86},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":87,"end":297},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":298,"end":447},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":448,"end":542},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":543,"end":783},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":86},"obj":"Sentence"},{"id":"T2","span":{"begin":87,"end":297},"obj":"Sentence"},{"id":"T3","span":{"begin":298,"end":447},"obj":"Sentence"},{"id":"T4","span":{"begin":448,"end":542},"obj":"Sentence"},{"id":"T5","span":{"begin":543,"end":783},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"}]},{"project":"DisGeNet-2017-sample","denotations":[{"id":"T2826","span":{"begin":208,"end":212},"obj":"gene:23095"},{"id":"T2827","span":{"begin":180,"end":199},"obj":"disease:C0007959"},{"id":"T2828","span":{"begin":252,"end":262},"obj":"disease:C0442874"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T2826","obj":"T2827"},{"id":"R2","pred":"associated_with","subj":"T2826","obj":"T2827"},{"id":"R3","pred":"associated_with","subj":"T2826","obj":"T2828"},{"id":"R4","pred":"associated_with","subj":"T2826","obj":"T2828"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T2826","pred":"source","obj":"DisGeNet-2017-sample"},{"subj":"T2827","pred":"source","obj":"DisGeNet-2017-sample"},{"subj":"T2828","pred":"source","obj":"DisGeNet-2017-sample"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"19381883-1#121#125#gene23095","span":{"begin":208,"end":212},"obj":"gene23095"},{"id":"19381883-1#121#125#gene9587","span":{"begin":208,"end":212},"obj":"gene9587"},{"id":"19381883-1#121#125#gene23095","span":{"begin":208,"end":212},"obj":"gene23095"},{"id":"19381883-1#121#125#gene9587","span":{"begin":208,"end":212},"obj":"gene9587"},{"id":"19381883-1#17#73#gene54332","span":{"begin":104,"end":160},"obj":"gene54332"},{"id":"19381883-1#80#85#gene54332","span":{"begin":167,"end":172},"obj":"gene54332"},{"id":"19381883-1#93#112#diseaseC0007959","span":{"begin":180,"end":199},"obj":"diseaseC0007959"},{"id":"19381883-1#165#175#diseaseC0442874","span":{"begin":252,"end":262},"obj":"diseaseC0442874"},{"id":"19381883-1#93#112#diseaseC0007959","span":{"begin":180,"end":199},"obj":"diseaseC0007959"},{"id":"19381883-1#165#175#diseaseC0442874","span":{"begin":252,"end":262},"obj":"diseaseC0442874"}],"relations":[{"id":"121#125#gene2309593#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#121#125#gene23095","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"121#125#gene23095165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#121#125#gene23095","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"121#125#gene2309593#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#121#125#gene23095","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"121#125#gene23095165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#121#125#gene23095","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"121#125#gene958793#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#121#125#gene9587","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"121#125#gene9587165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#121#125#gene9587","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"121#125#gene958793#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#121#125#gene9587","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"121#125#gene9587165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#121#125#gene9587","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"121#125#gene2309593#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#121#125#gene23095","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"121#125#gene23095165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#121#125#gene23095","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"121#125#gene2309593#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#121#125#gene23095","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"121#125#gene23095165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#121#125#gene23095","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"121#125#gene958793#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#121#125#gene9587","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"121#125#gene9587165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#121#125#gene9587","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"121#125#gene958793#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#121#125#gene9587","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"121#125#gene9587165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#121#125#gene9587","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"17#73#gene5433293#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#17#73#gene54332","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"17#73#gene54332165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#17#73#gene54332","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"17#73#gene5433293#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#17#73#gene54332","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"17#73#gene54332165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#17#73#gene54332","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"80#85#gene5433293#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#80#85#gene54332","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"80#85#gene54332165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#80#85#gene54332","obj":"19381883-1#165#175#diseaseC0442874"},{"id":"80#85#gene5433293#112#diseaseC0007959","pred":"associated_with","subj":"19381883-1#80#85#gene54332","obj":"19381883-1#93#112#diseaseC0007959"},{"id":"80#85#gene54332165#175#diseaseC0442874","pred":"associated_with","subj":"19381883-1#80#85#gene54332","obj":"19381883-1#165#175#diseaseC0442874"}],"attributes":[{"subj":"19381883-1#121#125#gene23095","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#121#125#gene9587","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#121#125#gene23095","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#121#125#gene9587","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#17#73#gene54332","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#80#85#gene54332","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#93#112#diseaseC0007959","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#165#175#diseaseC0442874","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#93#112#diseaseC0007959","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19381883-1#165#175#diseaseC0442874","pred":"source","obj":"DisGeNET5_gene_disease"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"DisGeNET","color":"#93ecad","default":true},{"id":"sentences","color":"#ec9393"},{"id":"DisGeNet-2017-sample","color":"#93adec"},{"id":"DisGeNET5_gene_disease","color":"#c7ec93"}]}]}}