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PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 170-172 DiseaseOrPhenotypicFeature denotes LC 0016060
T2 173-175 DiseaseOrPhenotypicFeature denotes MS 0006861
T3 176-178 DiseaseOrPhenotypicFeature denotes MS 0006861
T4 1155-1158 DiseaseOrPhenotypicFeature denotes can 0012833
T5 1631-1634 DiseaseOrPhenotypicFeature denotes can 0012833

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-54 Sentence denotes Statistical calibration of the SEQUEST XCorr function.
TextSentencer_T2 55-306 Sentence denotes Obtaining accurate peptide identifications from shotgun proteomics liquid chromatography tandem mass spectrometry (LC-MS/MS) experiments requires a score function that consistently ranks correct peptide-spectrum matches (PSMs) above incorrect matches.
TextSentencer_T3 307-506 Sentence denotes We have observed that, for the Sequest score function Xcorr, the inability to discriminate between correct and incorrect PSMs is due in part to spectrum-specific properties of the score distribution.
TextSentencer_T4 507-689 Sentence denotes In other words, some spectra score well regardless of which peptides they are scored against, and other spectra score well because they are scored against a large number of peptides.
TextSentencer_T5 690-840 Sentence denotes We describe a protocol for calibrating PSM score functions, and we demonstrate its application to Xcorr and the preliminary Sequest score function Sp.
TextSentencer_T6 841-1008 Sentence denotes The protocol accounts for spectrum- and peptide-specific effects by calculating p values for each spectrum individually, using only that spectrum's score distribution.
TextSentencer_T7 1009-1139 Sentence denotes We demonstrate that these calculated p values are uniform under a null distribution and therefore accurately measure significance.
TextSentencer_T8 1140-1282 Sentence denotes These p values can be used to estimate the false discovery rate, therefore, eliminating the need for an extra search against a decoy database.
TextSentencer_T9 1283-1649 Sentence denotes In addition, we show that the pvalues are better calibrated than their underlying scores; consequently, when ranking top-scoring PSMs from multiple spectra, p values are better at discriminating between correct and incorrect PSMs. The calibration protocol is generally applicable to any PSM score function for which an appopriate parametric family can be identified.
T1 0-54 Sentence denotes Statistical calibration of the SEQUEST XCorr function.
T2 55-306 Sentence denotes Obtaining accurate peptide identifications from shotgun proteomics liquid chromatography tandem mass spectrometry (LC-MS/MS) experiments requires a score function that consistently ranks correct peptide-spectrum matches (PSMs) above incorrect matches.
T3 307-506 Sentence denotes We have observed that, for the Sequest score function Xcorr, the inability to discriminate between correct and incorrect PSMs is due in part to spectrum-specific properties of the score distribution.
T4 507-689 Sentence denotes In other words, some spectra score well regardless of which peptides they are scored against, and other spectra score well because they are scored against a large number of peptides.
T5 690-840 Sentence denotes We describe a protocol for calibrating PSM score functions, and we demonstrate its application to Xcorr and the preliminary Sequest score function Sp.
T6 841-1008 Sentence denotes The protocol accounts for spectrum- and peptide-specific effects by calculating p values for each spectrum individually, using only that spectrum's score distribution.
T7 1009-1139 Sentence denotes We demonstrate that these calculated p values are uniform under a null distribution and therefore accurately measure significance.
T8 1140-1282 Sentence denotes These p values can be used to estimate the false discovery rate, therefore, eliminating the need for an extra search against a decoy database.
T9 1283-1649 Sentence denotes In addition, we show that the pvalues are better calibrated than their underlying scores; consequently, when ranking top-scoring PSMs from multiple spectra, p values are better at discriminating between correct and incorrect PSMs. The calibration protocol is generally applicable to any PSM score function for which an appopriate parametric family can be identified.

GlyCosmos600-GlycoGenes

Id Subject Object Predicate Lexical cue
PD-GlycoGenes-B_T1 664-669 GGDB:LARGE denotes large

pubmed-enju-pas

Id Subject Object Predicate Lexical cue
EnjuParser_T0 0-11 JJ denotes Statistical
EnjuParser_T1 12-23 NN denotes calibration
EnjuParser_T2 24-26 IN denotes of
EnjuParser_T3 27-30 DT denotes the
EnjuParser_T4 31-38 NN denotes SEQUEST
EnjuParser_T5 39-44 NN denotes XCorr
EnjuParser_T6 45-53 NN denotes function
EnjuParser_T7 55-64 VBG denotes Obtaining
EnjuParser_T8 65-73 JJ denotes accurate
EnjuParser_T9 74-81 NN denotes peptide
EnjuParser_T10 82-97 NNS denotes identifications
EnjuParser_T11 98-102 IN denotes from
EnjuParser_T12 103-110 NN denotes shotgun
EnjuParser_T13 111-121 NNS denotes proteomics
EnjuParser_T14 122-128 JJ denotes liquid
EnjuParser_T15 129-143 NN denotes chromatography
EnjuParser_T16 144-150 JJ denotes tandem
EnjuParser_T17 151-155 NN denotes mass
EnjuParser_T18 156-168 NN denotes spectrometry
EnjuParser_T19 169-170 -LRB- denotes (
EnjuParser_T20 170-178 NN denotes LC-MS/MS
EnjuParser_T21 178-179 -RRB- denotes )
EnjuParser_T22 180-191 NNS denotes experiments
EnjuParser_T23 192-200 VBZ denotes requires
EnjuParser_T24 201-202 DT denotes a
EnjuParser_T25 203-208 NN denotes score
EnjuParser_T26 209-217 NN denotes function
EnjuParser_T27 218-222 WDT denotes that
EnjuParser_T28 223-235 RB denotes consistently
EnjuParser_T29 236-241 VBZ denotes ranks
EnjuParser_T30 242-249 JJ denotes correct
EnjuParser_T31 250-266 JJ denotes peptide-spectrum
EnjuParser_T32 267-274 NNS denotes matches
EnjuParser_T33 275-276 -LRB- denotes (
EnjuParser_T34 276-280 NNS denotes PSMs
EnjuParser_T35 280-281 -RRB- denotes )
EnjuParser_T36 282-287 IN denotes above
EnjuParser_T37 288-297 JJ denotes incorrect
EnjuParser_T38 298-305 NNS denotes matches
EnjuParser_T39 307-309 PRP denotes We
EnjuParser_T40 310-314 VBP denotes have
EnjuParser_T41 315-323 VBN denotes observed
EnjuParser_T42 324-328 IN denotes that
EnjuParser_T43 328-329 -COMMA- denotes ,
EnjuParser_T44 330-333 IN denotes for
EnjuParser_T45 334-337 DT denotes the
EnjuParser_T46 338-345 NN denotes Sequest
EnjuParser_T47 346-351 NN denotes score
EnjuParser_T48 352-360 NN denotes function
EnjuParser_T49 361-366 NNP denotes Xcorr
EnjuParser_T50 366-367 -COMMA- denotes ,
EnjuParser_T51 368-371 DT denotes the
EnjuParser_T52 372-381 NN denotes inability
EnjuParser_T53 382-384 TO denotes to
EnjuParser_T54 385-397 VB denotes discriminate
EnjuParser_T55 398-405 IN denotes between
EnjuParser_T56 406-413 JJ denotes correct
EnjuParser_T57 414-417 CC denotes and
EnjuParser_T58 418-427 JJ denotes incorrect
EnjuParser_T59 428-432 NNS denotes PSMs
EnjuParser_T60 433-435 VBZ denotes is
EnjuParser_T61 436-439 JJ denotes due
EnjuParser_T62 440-442 IN denotes in
EnjuParser_T63 443-447 NN denotes part
EnjuParser_T64 448-450 TO denotes to
EnjuParser_T65 451-468 JJ denotes spectrum-specific
EnjuParser_T66 469-479 NNS denotes properties
EnjuParser_T67 480-482 IN denotes of
EnjuParser_T68 483-486 DT denotes the
EnjuParser_T69 487-492 NN denotes score
EnjuParser_T70 493-505 NN denotes distribution
EnjuParser_T71 507-509 IN denotes In
EnjuParser_T72 510-515 JJ denotes other
EnjuParser_T73 516-521 NNS denotes words
EnjuParser_T74 521-522 -COMMA- denotes ,
EnjuParser_T75 523-527 DT denotes some
EnjuParser_T76 528-535 NNS denotes spectra
EnjuParser_T77 536-541 VBP denotes score
EnjuParser_T78 542-546 RB denotes well
EnjuParser_T79 547-557 RB denotes regardless
EnjuParser_T80 558-560 IN denotes of
EnjuParser_T81 561-566 WDT denotes which
EnjuParser_T82 567-575 NNS denotes peptides
EnjuParser_T83 576-580 PRP denotes they
EnjuParser_T84 581-584 VBP denotes are
EnjuParser_T85 585-591 VBN denotes scored
EnjuParser_T86 592-599 IN denotes against
EnjuParser_T87 599-600 -COMMA- denotes ,
EnjuParser_T88 601-604 CC denotes and
EnjuParser_T89 605-610 JJ denotes other
EnjuParser_T90 611-618 NNS denotes spectra
EnjuParser_T91 619-624 VBP denotes score
EnjuParser_T92 625-629 RB denotes well
EnjuParser_T93 630-637 IN denotes because
EnjuParser_T94 638-642 PRP denotes they
EnjuParser_T95 643-646 VBP denotes are
EnjuParser_T96 647-653 VBN denotes scored
EnjuParser_T97 654-661 IN denotes against
EnjuParser_T98 662-663 DT denotes a
EnjuParser_T99 664-669 JJ denotes large
EnjuParser_T100 670-676 NN denotes number
EnjuParser_T101 677-679 IN denotes of
EnjuParser_T102 680-688 NNS denotes peptides
EnjuParser_T103 690-692 PRP denotes We
EnjuParser_T104 693-701 VBP denotes describe
EnjuParser_T105 702-703 DT denotes a
EnjuParser_T106 704-712 NN denotes protocol
EnjuParser_T107 713-716 IN denotes for
EnjuParser_T108 717-728 VBG denotes calibrating
EnjuParser_T109 729-732 NN denotes PSM
EnjuParser_T110 733-738 NN denotes score
EnjuParser_T111 739-748 NNS denotes functions
EnjuParser_T112 748-749 -COMMA- denotes ,
EnjuParser_T113 750-753 CC denotes and
EnjuParser_T114 754-756 PRP denotes we
EnjuParser_T115 757-768 VBP denotes demonstrate
EnjuParser_T116 769-772 PRP-DOLLAR- denotes its
EnjuParser_T117 773-784 NN denotes application
EnjuParser_T118 785-787 TO denotes to
EnjuParser_T119 788-793 NN denotes Xcorr
EnjuParser_T120 794-797 CC denotes and
EnjuParser_T121 798-801 DT denotes the
EnjuParser_T122 802-813 JJ denotes preliminary
EnjuParser_T123 814-821 NN denotes Sequest
EnjuParser_T124 822-827 NN denotes score
EnjuParser_T125 828-836 NN denotes function
EnjuParser_T126 837-840 NNP denotes Sp.
EnjuParser_T127 841-844 DT denotes The
EnjuParser_T128 845-853 NN denotes protocol
EnjuParser_T129 854-862 VBZ denotes accounts
EnjuParser_T130 863-866 IN denotes for
EnjuParser_T131 867-876 NN denotes spectrum-
EnjuParser_T132 877-880 CC denotes and
EnjuParser_T133 881-897 JJ denotes peptide-specific
EnjuParser_T134 898-905 NNS denotes effects
EnjuParser_T135 906-908 IN denotes by
EnjuParser_T136 909-920 VBG denotes calculating
EnjuParser_T137 921-922 NN denotes p
EnjuParser_T138 923-929 NNS denotes values
EnjuParser_T139 930-933 IN denotes for
EnjuParser_T140 934-938 DT denotes each
EnjuParser_T141 939-947 NN denotes spectrum
EnjuParser_T142 948-960 RB denotes individually
EnjuParser_T143 960-961 -COMMA- denotes ,
EnjuParser_T144 962-967 VBG denotes using
EnjuParser_T145 968-972 RB denotes only
EnjuParser_T146 973-977 IN denotes that
EnjuParser_T147 978-986 NN denotes spectrum
EnjuParser_T148 986-988 POS denotes 's
EnjuParser_T149 989-994 NN denotes score
EnjuParser_T150 995-1007 NN denotes distribution
EnjuParser_T151 1009-1011 PRP denotes We
EnjuParser_T152 1012-1023 VBP denotes demonstrate
EnjuParser_T153 1024-1028 IN denotes that
EnjuParser_T154 1029-1034 DT denotes these
EnjuParser_T155 1035-1045 VBN denotes calculated
EnjuParser_T156 1046-1047 NN denotes p
EnjuParser_T157 1048-1054 NNS denotes values
EnjuParser_T158 1055-1058 VBP denotes are
EnjuParser_T159 1059-1066 JJ denotes uniform
EnjuParser_T160 1067-1072 IN denotes under
EnjuParser_T161 1073-1074 DT denotes a
EnjuParser_T162 1075-1079 JJ denotes null
EnjuParser_T163 1080-1092 NN denotes distribution
EnjuParser_T164 1093-1096 CC denotes and
EnjuParser_T165 1097-1106 RB denotes therefore
EnjuParser_T166 1107-1117 RB denotes accurately
EnjuParser_T167 1118-1125 VB denotes measure
EnjuParser_T168 1126-1138 NN denotes significance
EnjuParser_T169 1140-1145 DT denotes These
EnjuParser_T170 1146-1147 NN denotes p
EnjuParser_T171 1148-1154 NNS denotes values
EnjuParser_T172 1155-1158 MD denotes can
EnjuParser_T173 1159-1161 VB denotes be
EnjuParser_T174 1162-1166 VBN denotes used
EnjuParser_T175 1167-1169 TO denotes to
EnjuParser_T176 1170-1178 VB denotes estimate
EnjuParser_T177 1179-1182 DT denotes the
EnjuParser_T178 1183-1188 JJ denotes false
EnjuParser_T179 1189-1198 NN denotes discovery
EnjuParser_T180 1199-1203 NN denotes rate
EnjuParser_T181 1203-1204 -COMMA- denotes ,
EnjuParser_T182 1205-1214 RB denotes therefore
EnjuParser_T183 1214-1215 -COMMA- denotes ,
EnjuParser_T184 1216-1227 VBG denotes eliminating
EnjuParser_T185 1228-1231 DT denotes the
EnjuParser_T186 1232-1236 NN denotes need
EnjuParser_T187 1237-1240 IN denotes for
EnjuParser_T188 1241-1243 DT denotes an
EnjuParser_T189 1244-1249 JJ denotes extra
EnjuParser_T190 1250-1256 NN denotes search
EnjuParser_T191 1257-1264 IN denotes against
EnjuParser_T192 1265-1266 DT denotes a
EnjuParser_T193 1267-1272 NN denotes decoy
EnjuParser_T194 1273-1281 NN denotes database
EnjuParser_T195 1283-1285 IN denotes In
EnjuParser_T196 1286-1294 NN denotes addition
EnjuParser_T197 1294-1295 -COMMA- denotes ,
EnjuParser_T198 1296-1298 PRP denotes we
EnjuParser_T199 1299-1303 VBP denotes show
EnjuParser_T200 1304-1308 IN denotes that
EnjuParser_T201 1309-1312 DT denotes the
EnjuParser_T202 1313-1320 NNS denotes pvalues
EnjuParser_T203 1321-1324 VBP denotes are
EnjuParser_T204 1325-1331 RBR denotes better
EnjuParser_T205 1332-1342 VBN denotes calibrated
EnjuParser_T206 1343-1347 IN denotes than
EnjuParser_T207 1348-1353 PRP-DOLLAR- denotes their
EnjuParser_T208 1354-1364 VBG denotes underlying
EnjuParser_T209 1365-1371 NNS denotes scores
EnjuParser_T210 1371-1372 -SEMICOLON- denotes ;
EnjuParser_T211 1373-1385 RB denotes consequently
EnjuParser_T212 1385-1386 -COMMA- denotes ,
EnjuParser_T213 1387-1391 WRB denotes when
EnjuParser_T214 1392-1399 VBG denotes ranking
EnjuParser_T215 1400-1411 JJ denotes top-scoring
EnjuParser_T216 1412-1416 NNS denotes PSMs
EnjuParser_T217 1417-1421 IN denotes from
EnjuParser_T218 1422-1430 JJ denotes multiple
EnjuParser_T219 1431-1438 NNS denotes spectra
EnjuParser_T220 1438-1439 -COMMA- denotes ,
EnjuParser_T221 1440-1441 NN denotes p
EnjuParser_T222 1442-1448 NNS denotes values
EnjuParser_T223 1449-1452 VBP denotes are
EnjuParser_T224 1453-1459 RB denotes better
EnjuParser_T225 1460-1462 IN denotes at
EnjuParser_T226 1463-1477 VBG denotes discriminating
EnjuParser_T227 1478-1485 IN denotes between
EnjuParser_T228 1486-1493 JJ denotes correct
EnjuParser_T229 1494-1497 CC denotes and
EnjuParser_T230 1498-1507 JJ denotes incorrect
EnjuParser_T231 1508-1513 NNP denotes PSMs.
EnjuParser_T232 1514-1517 DT denotes The
EnjuParser_T233 1518-1529 NN denotes calibration
EnjuParser_T234 1530-1538 NN denotes protocol
EnjuParser_T235 1539-1541 VBZ denotes is
EnjuParser_T236 1542-1551 RB denotes generally
EnjuParser_T237 1552-1562 JJ denotes applicable
EnjuParser_T238 1563-1565 TO denotes to
EnjuParser_T239 1566-1569 DT denotes any
EnjuParser_T240 1570-1573 NN denotes PSM
EnjuParser_T241 1574-1579 NN denotes score
EnjuParser_T242 1580-1588 NN denotes function
EnjuParser_T243 1589-1592 IN denotes for
EnjuParser_T244 1593-1598 WDT denotes which
EnjuParser_T245 1599-1601 DT denotes an
EnjuParser_T246 1602-1612 JJ denotes appopriate
EnjuParser_T247 1613-1623 JJ denotes parametric
EnjuParser_T248 1624-1630 NN denotes family
EnjuParser_T249 1631-1634 MD denotes can
EnjuParser_T250 1635-1637 VB denotes be
EnjuParser_T251 1638-1648 VBN denotes identified
EnjuParser_R0 EnjuParser_T1 EnjuParser_T0 arg1Of calibration,Statistical
EnjuParser_R1 EnjuParser_T1 EnjuParser_T2 arg1Of calibration,of
EnjuParser_R2 EnjuParser_T6 EnjuParser_T2 arg2Of function,of
EnjuParser_R3 EnjuParser_T6 EnjuParser_T3 arg1Of function,the
EnjuParser_R4 EnjuParser_T6 EnjuParser_T4 arg1Of function,SEQUEST
EnjuParser_R5 EnjuParser_T6 EnjuParser_T5 arg1Of function,XCorr
EnjuParser_R6 EnjuParser_T10 EnjuParser_T7 arg1Of identifications,Obtaining
EnjuParser_R7 EnjuParser_T10 EnjuParser_T8 arg1Of identifications,accurate
EnjuParser_R8 EnjuParser_T10 EnjuParser_T9 arg1Of identifications,peptide
EnjuParser_R9 EnjuParser_T10 EnjuParser_T11 arg1Of identifications,from
EnjuParser_R10 EnjuParser_T22 EnjuParser_T11 arg2Of experiments,from
EnjuParser_R11 EnjuParser_T22 EnjuParser_T12 arg1Of experiments,shotgun
EnjuParser_R12 EnjuParser_T22 EnjuParser_T13 arg1Of experiments,proteomics
EnjuParser_R13 EnjuParser_T22 EnjuParser_T14 arg1Of experiments,liquid
EnjuParser_R14 EnjuParser_T22 EnjuParser_T15 arg1Of experiments,chromatography
EnjuParser_R15 EnjuParser_T22 EnjuParser_T16 arg1Of experiments,tandem
EnjuParser_R16 EnjuParser_T22 EnjuParser_T17 arg1Of experiments,mass
EnjuParser_R17 EnjuParser_T22 EnjuParser_T18 arg1Of experiments,spectrometry
EnjuParser_R18 EnjuParser_T22 EnjuParser_T19 arg1Of experiments,(
EnjuParser_R19 EnjuParser_T20 EnjuParser_T19 arg2Of LC-MS/MS,(
EnjuParser_R20 EnjuParser_T21 EnjuParser_T19 arg3Of ),(
EnjuParser_R21 EnjuParser_T10 EnjuParser_T23 arg1Of identifications,requires
EnjuParser_R22 EnjuParser_T26 EnjuParser_T23 arg2Of function,requires
EnjuParser_R23 EnjuParser_T26 EnjuParser_T24 arg1Of function,a
EnjuParser_R24 EnjuParser_T26 EnjuParser_T25 arg1Of function,score
EnjuParser_R25 EnjuParser_T26 EnjuParser_T27 arg1Of function,that
EnjuParser_R26 EnjuParser_T29 EnjuParser_T28 arg1Of ranks,consistently
EnjuParser_R27 EnjuParser_T26 EnjuParser_T29 arg1Of function,ranks
EnjuParser_R28 EnjuParser_T32 EnjuParser_T29 arg2Of matches,ranks
EnjuParser_R29 EnjuParser_T32 EnjuParser_T30 arg1Of matches,correct
EnjuParser_R30 EnjuParser_T32 EnjuParser_T31 arg1Of matches,peptide-spectrum
EnjuParser_R31 EnjuParser_T32 EnjuParser_T33 arg1Of matches,(
EnjuParser_R32 EnjuParser_T34 EnjuParser_T33 arg2Of PSMs,(
EnjuParser_R33 EnjuParser_T35 EnjuParser_T33 arg3Of ),(
EnjuParser_R34 EnjuParser_T32 EnjuParser_T36 arg1Of matches,above
EnjuParser_R35 EnjuParser_T38 EnjuParser_T36 arg2Of matches,above
EnjuParser_R36 EnjuParser_T38 EnjuParser_T37 arg1Of matches,incorrect
EnjuParser_R37 EnjuParser_T39 EnjuParser_T40 arg1Of We,have
EnjuParser_R38 EnjuParser_T41 EnjuParser_T40 arg2Of observed,have
EnjuParser_R39 EnjuParser_T39 EnjuParser_T41 arg1Of We,observed
EnjuParser_R40 EnjuParser_T60 EnjuParser_T41 arg2Of is,observed
EnjuParser_R41 EnjuParser_T60 EnjuParser_T42 arg1Of is,that
EnjuParser_R42 EnjuParser_T60 EnjuParser_T43 arg1Of is,","
EnjuParser_R43 EnjuParser_T60 EnjuParser_T44 arg1Of is,for
EnjuParser_R44 EnjuParser_T49 EnjuParser_T44 arg2Of Xcorr,for
EnjuParser_R45 EnjuParser_T49 EnjuParser_T45 arg1Of Xcorr,the
EnjuParser_R46 EnjuParser_T49 EnjuParser_T46 arg1Of Xcorr,Sequest
EnjuParser_R47 EnjuParser_T49 EnjuParser_T47 arg1Of Xcorr,score
EnjuParser_R48 EnjuParser_T49 EnjuParser_T48 arg1Of Xcorr,function
EnjuParser_R49 EnjuParser_T60 EnjuParser_T50 arg1Of is,","
EnjuParser_R50 EnjuParser_T52 EnjuParser_T51 arg1Of inability,the
EnjuParser_R51 EnjuParser_T54 EnjuParser_T53 arg1Of discriminate,to
EnjuParser_R52 EnjuParser_T52 EnjuParser_T53 modOf inability,to
EnjuParser_R53 EnjuParser_T54 EnjuParser_T55 arg1Of discriminate,between
EnjuParser_R54 EnjuParser_T59 EnjuParser_T55 arg2Of PSMs,between
EnjuParser_R55 EnjuParser_T59 EnjuParser_T56 arg1Of PSMs,correct
EnjuParser_R56 EnjuParser_T56 EnjuParser_T57 arg1Of correct,and
EnjuParser_R57 EnjuParser_T58 EnjuParser_T57 arg2Of incorrect,and
EnjuParser_R58 EnjuParser_T59 EnjuParser_T58 arg1Of PSMs,incorrect
EnjuParser_R59 EnjuParser_T52 EnjuParser_T60 arg1Of inability,is
EnjuParser_R60 EnjuParser_T61 EnjuParser_T60 arg2Of due,is
EnjuParser_R61 EnjuParser_T52 EnjuParser_T61 arg1Of inability,due
EnjuParser_R62 EnjuParser_T61 EnjuParser_T62 arg1Of due,in
EnjuParser_R63 EnjuParser_T63 EnjuParser_T62 arg2Of part,in
EnjuParser_R64 EnjuParser_T61 EnjuParser_T64 arg1Of due,to
EnjuParser_R65 EnjuParser_T66 EnjuParser_T64 arg2Of properties,to
EnjuParser_R66 EnjuParser_T66 EnjuParser_T65 arg1Of properties,spectrum-specific
EnjuParser_R67 EnjuParser_T66 EnjuParser_T67 arg1Of properties,of
EnjuParser_R68 EnjuParser_T70 EnjuParser_T67 arg2Of distribution,of
EnjuParser_R69 EnjuParser_T70 EnjuParser_T68 arg1Of distribution,the
EnjuParser_R70 EnjuParser_T70 EnjuParser_T69 arg1Of distribution,score
EnjuParser_R71 EnjuParser_T77 EnjuParser_T71 arg1Of score,In
EnjuParser_R72 EnjuParser_T73 EnjuParser_T71 arg2Of words,In
EnjuParser_R73 EnjuParser_T73 EnjuParser_T72 arg1Of words,other
EnjuParser_R74 EnjuParser_T77 EnjuParser_T74 arg1Of score,","
EnjuParser_R75 EnjuParser_T76 EnjuParser_T75 arg1Of spectra,some
EnjuParser_R76 EnjuParser_T76 EnjuParser_T77 arg1Of spectra,score
EnjuParser_R77 EnjuParser_T81 EnjuParser_T77 arg2Of which,score
EnjuParser_R78 EnjuParser_T79 EnjuParser_T78 arg1Of regardless,well
EnjuParser_R79 EnjuParser_T77 EnjuParser_T79 arg1Of score,regardless
EnjuParser_R80 EnjuParser_T88 EnjuParser_T80 arg1Of and,of
EnjuParser_R81 EnjuParser_T82 EnjuParser_T80 arg2Of peptides,of
EnjuParser_R82 EnjuParser_T82 EnjuParser_T81 arg1Of peptides,which
EnjuParser_R83 EnjuParser_T83 EnjuParser_T84 arg1Of they,are
EnjuParser_R84 EnjuParser_T85 EnjuParser_T84 arg2Of scored,are
EnjuParser_R85 EnjuParser_T83 EnjuParser_T85 arg2Of they,scored
EnjuParser_R86 EnjuParser_T85 EnjuParser_T86 arg1Of scored,against
EnjuParser_R87 EnjuParser_T88 EnjuParser_T87 arg1Of and,","
EnjuParser_R88 EnjuParser_T85 EnjuParser_T88 arg1Of scored,and
EnjuParser_R89 EnjuParser_T91 EnjuParser_T88 arg2Of score,and
EnjuParser_R90 EnjuParser_T90 EnjuParser_T89 arg1Of spectra,other
EnjuParser_R91 EnjuParser_T90 EnjuParser_T91 arg1Of spectra,score
EnjuParser_R92 EnjuParser_T91 EnjuParser_T92 arg1Of score,well
EnjuParser_R93 EnjuParser_T91 EnjuParser_T93 arg1Of score,because
EnjuParser_R94 EnjuParser_T96 EnjuParser_T93 arg2Of scored,because
EnjuParser_R95 EnjuParser_T94 EnjuParser_T95 arg1Of they,are
EnjuParser_R96 EnjuParser_T96 EnjuParser_T95 arg2Of scored,are
EnjuParser_R97 EnjuParser_T94 EnjuParser_T96 arg2Of they,scored
EnjuParser_R98 EnjuParser_T96 EnjuParser_T97 arg1Of scored,against
EnjuParser_R99 EnjuParser_T100 EnjuParser_T97 arg2Of number,against
EnjuParser_R100 EnjuParser_T100 EnjuParser_T98 arg1Of number,a
EnjuParser_R101 EnjuParser_T100 EnjuParser_T99 arg1Of number,large
EnjuParser_R102 EnjuParser_T100 EnjuParser_T101 arg1Of number,of
EnjuParser_R103 EnjuParser_T102 EnjuParser_T101 arg2Of peptides,of
EnjuParser_R104 EnjuParser_T103 EnjuParser_T104 arg1Of We,describe
EnjuParser_R105 EnjuParser_T106 EnjuParser_T104 arg2Of protocol,describe
EnjuParser_R106 EnjuParser_T106 EnjuParser_T105 arg1Of protocol,a
EnjuParser_R107 EnjuParser_T106 EnjuParser_T107 arg1Of protocol,for
EnjuParser_R108 EnjuParser_T108 EnjuParser_T107 arg2Of calibrating,for
EnjuParser_R109 EnjuParser_T111 EnjuParser_T108 arg2Of functions,calibrating
EnjuParser_R110 EnjuParser_T111 EnjuParser_T109 arg1Of functions,PSM
EnjuParser_R111 EnjuParser_T111 EnjuParser_T110 arg1Of functions,score
EnjuParser_R112 EnjuParser_T113 EnjuParser_T112 arg1Of and,","
EnjuParser_R113 EnjuParser_T104 EnjuParser_T113 arg1Of describe,and
EnjuParser_R114 EnjuParser_T115 EnjuParser_T113 arg2Of demonstrate,and
EnjuParser_R115 EnjuParser_T114 EnjuParser_T115 arg1Of we,demonstrate
EnjuParser_R116 EnjuParser_T117 EnjuParser_T115 arg2Of application,demonstrate
EnjuParser_R117 EnjuParser_T117 EnjuParser_T116 arg1Of application,its
EnjuParser_R118 EnjuParser_T117 EnjuParser_T118 arg1Of application,to
EnjuParser_R119 EnjuParser_T119 EnjuParser_T118 arg2Of Xcorr,to
EnjuParser_R120 EnjuParser_T113 EnjuParser_T120 arg1Of and,and
EnjuParser_R121 EnjuParser_T129 EnjuParser_T120 arg2Of accounts,and
EnjuParser_R122 EnjuParser_T126 EnjuParser_T121 arg1Of Sp.,the
EnjuParser_R123 EnjuParser_T126 EnjuParser_T122 arg1Of Sp.,preliminary
EnjuParser_R124 EnjuParser_T125 EnjuParser_T123 arg1Of function,Sequest
EnjuParser_R125 EnjuParser_T125 EnjuParser_T124 arg1Of function,score
EnjuParser_R126 EnjuParser_T126 EnjuParser_T125 arg1Of Sp.,function
EnjuParser_R127 EnjuParser_T129 EnjuParser_T126 arg1Of accounts,Sp.
EnjuParser_R128 EnjuParser_T128 EnjuParser_T127 arg1Of protocol,The
EnjuParser_R129 EnjuParser_T128 EnjuParser_T129 arg1Of protocol,accounts
EnjuParser_R130 EnjuParser_T129 EnjuParser_T130 arg1Of accounts,for
EnjuParser_R131 EnjuParser_T132 EnjuParser_T130 arg2Of and,for
EnjuParser_R132 EnjuParser_T131 EnjuParser_T132 arg1Of spectrum-,and
EnjuParser_R133 EnjuParser_T134 EnjuParser_T132 arg2Of effects,and
EnjuParser_R134 EnjuParser_T134 EnjuParser_T133 arg1Of effects,peptide-specific
EnjuParser_R135 EnjuParser_T129 EnjuParser_T135 arg1Of accounts,by
EnjuParser_R136 EnjuParser_T136 EnjuParser_T135 arg2Of calculating,by
EnjuParser_R137 EnjuParser_T128 EnjuParser_T136 arg1Of protocol,calculating
EnjuParser_R138 EnjuParser_T138 EnjuParser_T136 arg2Of values,calculating
EnjuParser_R139 EnjuParser_T138 EnjuParser_T137 arg1Of values,p
EnjuParser_R140 EnjuParser_T138 EnjuParser_T139 arg1Of values,for
EnjuParser_R141 EnjuParser_T141 EnjuParser_T139 arg2Of spectrum,for
EnjuParser_R142 EnjuParser_T141 EnjuParser_T140 arg1Of spectrum,each
EnjuParser_R143 EnjuParser_T136 EnjuParser_T142 arg1Of calculating,individually
EnjuParser_R144 EnjuParser_T129 EnjuParser_T143 arg1Of accounts,","
EnjuParser_R145 EnjuParser_T128 EnjuParser_T144 arg1Of protocol,using
EnjuParser_R146 EnjuParser_T150 EnjuParser_T144 arg2Of distribution,using
EnjuParser_R147 EnjuParser_T129 EnjuParser_T144 modOf accounts,using
EnjuParser_R148 EnjuParser_T144 EnjuParser_T145 arg1Of using,only
EnjuParser_R149 EnjuParser_T147 EnjuParser_T146 arg1Of spectrum,that
EnjuParser_R150 EnjuParser_T150 EnjuParser_T148 arg1Of distribution,'s
EnjuParser_R151 EnjuParser_T147 EnjuParser_T148 arg2Of spectrum,'s
EnjuParser_R152 EnjuParser_T150 EnjuParser_T149 arg1Of distribution,score
EnjuParser_R153 EnjuParser_T151 EnjuParser_T152 arg1Of We,demonstrate
EnjuParser_R154 EnjuParser_T164 EnjuParser_T152 arg2Of and,demonstrate
EnjuParser_R155 EnjuParser_T164 EnjuParser_T153 arg1Of and,that
EnjuParser_R156 EnjuParser_T157 EnjuParser_T154 arg1Of values,these
EnjuParser_R157 EnjuParser_T157 EnjuParser_T155 arg2Of values,calculated
EnjuParser_R158 EnjuParser_T157 EnjuParser_T156 arg1Of values,p
EnjuParser_R159 EnjuParser_T157 EnjuParser_T158 arg1Of values,are
EnjuParser_R160 EnjuParser_T159 EnjuParser_T158 arg2Of uniform,are
EnjuParser_R161 EnjuParser_T157 EnjuParser_T159 arg1Of values,uniform
EnjuParser_R162 EnjuParser_T159 EnjuParser_T160 arg1Of uniform,under
EnjuParser_R163 EnjuParser_T163 EnjuParser_T160 arg2Of distribution,under
EnjuParser_R164 EnjuParser_T163 EnjuParser_T161 arg1Of distribution,a
EnjuParser_R165 EnjuParser_T163 EnjuParser_T162 arg1Of distribution,null
EnjuParser_R166 EnjuParser_T158 EnjuParser_T164 arg1Of are,and
EnjuParser_R167 EnjuParser_T167 EnjuParser_T164 arg2Of measure,and
EnjuParser_R168 EnjuParser_T167 EnjuParser_T165 arg1Of measure,therefore
EnjuParser_R169 EnjuParser_T167 EnjuParser_T166 arg1Of measure,accurately
EnjuParser_R170 EnjuParser_T157 EnjuParser_T167 arg1Of values,measure
EnjuParser_R171 EnjuParser_T168 EnjuParser_T167 arg2Of significance,measure
EnjuParser_R172 EnjuParser_T171 EnjuParser_T169 arg1Of values,These
EnjuParser_R173 EnjuParser_T171 EnjuParser_T170 arg1Of values,p
EnjuParser_R174 EnjuParser_T171 EnjuParser_T172 arg1Of values,can
EnjuParser_R175 EnjuParser_T174 EnjuParser_T172 arg2Of used,can
EnjuParser_R176 EnjuParser_T171 EnjuParser_T173 arg1Of values,be
EnjuParser_R177 EnjuParser_T174 EnjuParser_T173 arg2Of used,be
EnjuParser_R178 EnjuParser_T171 EnjuParser_T174 arg2Of values,used
EnjuParser_R179 EnjuParser_T176 EnjuParser_T174 arg3Of estimate,used
EnjuParser_R180 EnjuParser_T176 EnjuParser_T175 arg1Of estimate,to
EnjuParser_R181 EnjuParser_T180 EnjuParser_T176 arg2Of rate,estimate
EnjuParser_R182 EnjuParser_T180 EnjuParser_T177 arg1Of rate,the
EnjuParser_R183 EnjuParser_T180 EnjuParser_T178 arg1Of rate,false
EnjuParser_R184 EnjuParser_T180 EnjuParser_T179 arg1Of rate,discovery
EnjuParser_R185 EnjuParser_T176 EnjuParser_T181 arg1Of estimate,","
EnjuParser_R186 EnjuParser_T176 EnjuParser_T182 arg1Of estimate,therefore
EnjuParser_R187 EnjuParser_T176 EnjuParser_T183 arg1Of estimate,","
EnjuParser_R188 EnjuParser_T186 EnjuParser_T184 arg2Of need,eliminating
EnjuParser_R189 EnjuParser_T176 EnjuParser_T184 modOf estimate,eliminating
EnjuParser_R190 EnjuParser_T186 EnjuParser_T185 arg1Of need,the
EnjuParser_R191 EnjuParser_T186 EnjuParser_T187 arg1Of need,for
EnjuParser_R192 EnjuParser_T190 EnjuParser_T187 arg2Of search,for
EnjuParser_R193 EnjuParser_T190 EnjuParser_T188 arg1Of search,an
EnjuParser_R194 EnjuParser_T190 EnjuParser_T189 arg1Of search,extra
EnjuParser_R195 EnjuParser_T190 EnjuParser_T191 arg1Of search,against
EnjuParser_R196 EnjuParser_T194 EnjuParser_T191 arg2Of database,against
EnjuParser_R197 EnjuParser_T194 EnjuParser_T192 arg1Of database,a
EnjuParser_R198 EnjuParser_T194 EnjuParser_T193 arg1Of database,decoy
EnjuParser_R199 EnjuParser_T199 EnjuParser_T195 arg1Of show,In
EnjuParser_R200 EnjuParser_T196 EnjuParser_T195 arg2Of addition,In
EnjuParser_R201 EnjuParser_T199 EnjuParser_T197 arg1Of show,","
EnjuParser_R202 EnjuParser_T198 EnjuParser_T199 arg1Of we,show
EnjuParser_R203 EnjuParser_T203 EnjuParser_T199 arg2Of are,show
EnjuParser_R204 EnjuParser_T203 EnjuParser_T200 arg1Of are,that
EnjuParser_R205 EnjuParser_T202 EnjuParser_T201 arg1Of pvalues,the
EnjuParser_R206 EnjuParser_T202 EnjuParser_T203 arg1Of pvalues,are
EnjuParser_R207 EnjuParser_T205 EnjuParser_T203 arg2Of calibrated,are
EnjuParser_R208 EnjuParser_T205 EnjuParser_T204 arg1Of calibrated,better
EnjuParser_R209 EnjuParser_T202 EnjuParser_T205 arg1Of pvalues,calibrated
EnjuParser_R210 EnjuParser_T205 EnjuParser_T206 arg1Of calibrated,than
EnjuParser_R211 EnjuParser_T209 EnjuParser_T206 arg2Of scores,than
EnjuParser_R212 EnjuParser_T209 EnjuParser_T207 arg1Of scores,their
EnjuParser_R213 EnjuParser_T209 EnjuParser_T208 arg1Of scores,underlying
EnjuParser_R214 EnjuParser_T199 EnjuParser_T210 arg1Of show,;
EnjuParser_R215 EnjuParser_T223 EnjuParser_T210 arg2Of are,;
EnjuParser_R216 EnjuParser_T223 EnjuParser_T211 arg1Of are,consequently
EnjuParser_R217 EnjuParser_T223 EnjuParser_T212 arg1Of are,","
EnjuParser_R218 EnjuParser_T223 EnjuParser_T213 arg1Of are,when
EnjuParser_R219 EnjuParser_T214 EnjuParser_T213 arg2Of ranking,when
EnjuParser_R220 EnjuParser_T222 EnjuParser_T214 arg1Of values,ranking
EnjuParser_R221 EnjuParser_T216 EnjuParser_T214 arg2Of PSMs,ranking
EnjuParser_R222 EnjuParser_T216 EnjuParser_T215 arg1Of PSMs,top-scoring
EnjuParser_R223 EnjuParser_T216 EnjuParser_T217 arg1Of PSMs,from
EnjuParser_R224 EnjuParser_T219 EnjuParser_T217 arg2Of spectra,from
EnjuParser_R225 EnjuParser_T219 EnjuParser_T218 arg1Of spectra,multiple
EnjuParser_R226 EnjuParser_T223 EnjuParser_T220 arg1Of are,","
EnjuParser_R227 EnjuParser_T222 EnjuParser_T221 arg1Of values,p
EnjuParser_R228 EnjuParser_T222 EnjuParser_T223 arg1Of values,are
EnjuParser_R229 EnjuParser_T224 EnjuParser_T223 arg2Of better,are
EnjuParser_R230 EnjuParser_T222 EnjuParser_T224 arg1Of values,better
EnjuParser_R231 EnjuParser_T223 EnjuParser_T225 arg1Of are,at
EnjuParser_R232 EnjuParser_T226 EnjuParser_T225 arg2Of discriminating,at
EnjuParser_R233 EnjuParser_T234 EnjuParser_T226 arg2Of protocol,discriminating
EnjuParser_R234 EnjuParser_T235 EnjuParser_T226 arg3Of is,discriminating
EnjuParser_R235 EnjuParser_T226 EnjuParser_T227 arg1Of discriminating,between
EnjuParser_R236 EnjuParser_T231 EnjuParser_T227 arg2Of PSMs.,between
EnjuParser_R237 EnjuParser_T231 EnjuParser_T228 arg1Of PSMs.,correct
EnjuParser_R238 EnjuParser_T228 EnjuParser_T229 arg1Of correct,and
EnjuParser_R239 EnjuParser_T230 EnjuParser_T229 arg2Of incorrect,and
EnjuParser_R240 EnjuParser_T231 EnjuParser_T230 arg1Of PSMs.,incorrect
EnjuParser_R241 EnjuParser_T234 EnjuParser_T232 arg1Of protocol,The
EnjuParser_R242 EnjuParser_T234 EnjuParser_T233 arg1Of protocol,calibration
EnjuParser_R243 EnjuParser_T234 EnjuParser_T235 arg1Of protocol,is
EnjuParser_R244 EnjuParser_T237 EnjuParser_T235 arg2Of applicable,is
EnjuParser_R245 EnjuParser_T235 EnjuParser_T236 arg1Of is,generally
EnjuParser_R246 EnjuParser_T234 EnjuParser_T237 arg1Of protocol,applicable
EnjuParser_R247 EnjuParser_T237 EnjuParser_T238 arg1Of applicable,to
EnjuParser_R248 EnjuParser_T242 EnjuParser_T238 arg2Of function,to
EnjuParser_R249 EnjuParser_T242 EnjuParser_T239 arg1Of function,any
EnjuParser_R250 EnjuParser_T242 EnjuParser_T240 arg1Of function,PSM
EnjuParser_R251 EnjuParser_T242 EnjuParser_T241 arg1Of function,score
EnjuParser_R252 EnjuParser_T251 EnjuParser_T243 arg1Of identified,for
EnjuParser_R253 EnjuParser_T242 EnjuParser_T243 arg2Of function,for
EnjuParser_R254 EnjuParser_T242 EnjuParser_T244 arg1Of function,which
EnjuParser_R255 EnjuParser_T248 EnjuParser_T245 arg1Of family,an
EnjuParser_R256 EnjuParser_T248 EnjuParser_T246 arg1Of family,appopriate
EnjuParser_R257 EnjuParser_T248 EnjuParser_T247 arg1Of family,parametric
EnjuParser_R258 EnjuParser_T248 EnjuParser_T249 arg1Of family,can
EnjuParser_R259 EnjuParser_T251 EnjuParser_T249 arg2Of identified,can
EnjuParser_R260 EnjuParser_T248 EnjuParser_T250 arg1Of family,be
EnjuParser_R261 EnjuParser_T251 EnjuParser_T250 arg2Of identified,be
EnjuParser_R262 EnjuParser_T248 EnjuParser_T251 arg2Of family,identified