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PubMed:19208385 / 0-167 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-127 Sentence denotes Osteogenesis imperfecta type III with intracranial hemorrhage and brachydactyly associated with mutations in exon 49 of COL1A2.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
5776 0-32 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta type III MESH:C536044
5777 38-61 DiseaseOrPhenotypicFeature denotes intracranial hemorrhage MESH:D020300
5778 66-79 DiseaseOrPhenotypicFeature denotes brachydactyly MESH:D059327
5779 120-126 GeneOrGeneProduct denotes COL1A2 NCBIGene:1278
5780 128-151 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta MESH:D010013
5781 153-155 DiseaseOrPhenotypicFeature denotes OI MESH:D010013

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 0-23 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta 0019019
T2 38-61 DiseaseOrPhenotypicFeature denotes intracranial hemorrhage 0005049
T3 66-79 DiseaseOrPhenotypicFeature denotes brachydactyly 0021004
T4 128-151 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta 0019019

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 29-32 GeneOrGeneProduct denotes III
T2 96-105 GeneOrGeneProduct denotes mutations
T3 120-126 GeneOrGeneProduct denotes COL1A2

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 120-126 GeneOrGeneProduct denotes COL1A2

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 0-32 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta type III C536044
T2 38-61 DiseaseOrPhenotypicFeature denotes intracranial hemorrhage D020300
T3 66-79 DiseaseOrPhenotypicFeature denotes brachydactyly D059327
T4 128-151 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta D010013
T5 153-155 DiseaseOrPhenotypicFeature denotes OI D010013

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 120-126 GeneOrGeneProduct denotes COL1A2

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 0-32 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta type III 0009804
T2 38-61 DiseaseOrPhenotypicFeature denotes intracranial hemorrhage 0005049
T3 66-79 DiseaseOrPhenotypicFeature denotes brachydactyly 0021004|0017424
T5 128-151 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta 0019019
T6 153-155 DiseaseOrPhenotypicFeature denotes OI 0019019

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 0-32 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta type III C536044
T2 38-61 DiseaseOrPhenotypicFeature denotes intracranial hemorrhage D020300
T3 66-79 DiseaseOrPhenotypicFeature denotes brachydactyly D059327
T4 128-151 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta D010013
T5 153-155 DiseaseOrPhenotypicFeature denotes OI D010013

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 0-32 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta type III C536044
T2 38-61 DiseaseOrPhenotypicFeature denotes intracranial hemorrhage D020300
T3 66-79 DiseaseOrPhenotypicFeature denotes brachydactyly D059327
T4 128-151 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta D010013
T5 153-155 DiseaseOrPhenotypicFeature denotes OI D010013

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T57517 120-126 GeneOrGeneProduct denotes COL1A2
T88966 153-155 DiseaseOrPhenotypicFeature denotes OI D010013
T73081 128-151 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta D010013
T39072 66-79 DiseaseOrPhenotypicFeature denotes brachydactyly D059327
T85622 38-61 DiseaseOrPhenotypicFeature denotes intracranial hemorrhage D020300
T35891 0-32 DiseaseOrPhenotypicFeature denotes Osteogenesis imperfecta type III C536044

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-127 Sentence denotes Osteogenesis imperfecta type III with intracranial hemorrhage and brachydactyly associated with mutations in exon 49 of COL1A2.
T1 0-127 Sentence denotes Osteogenesis imperfecta type III with intracranial hemorrhage and brachydactyly associated with mutations in exon 49 of COL1A2.

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
19208385-0#120#126#gene1278 120-126 gene1278 denotes COL1A2
19208385-0#0#32#diseaseC0268362 0-32 diseaseC0268362 denotes Osteogenesis imperfecta type III
120#126#gene12780#32#diseaseC0268362 19208385-0#120#126#gene1278 19208385-0#0#32#diseaseC0268362 associated_with COL1A2,Osteogenesis imperfecta type III

PubCasesHPO

Id Subject Object Predicate Lexical cue
TI1 38-61 HP:0002170 denotes intracranial hemorrhage
TI2 66-79 HP:0001156 denotes brachydactyly

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 128-151 ORDO:666 denotes Osteogenesis imperfecta