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PubMed:19141607 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 503-511 https://glytoucan.org/Structures/Glycans/G00022MO denotes LPS core
T2 864-871 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 503-511 Glycan_Motif denotes LPS core https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00022MO
T2 864-871 Glycan_Motif denotes glucose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G15021LG

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 503-511 https://glytoucan.org/Structures/Glycans/G00022MO denotes LPS core
T2 864-871 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-103 Sentence denotes Structural elucidation of the novel core oligosaccharide from LPS of Burkholderia cepacia serogroup O4.
TextSentencer_T2 104-322 Sentence denotes Lipopolysaccharide (LPS) is an important virulence factor of Burkholderia cepacia, an opportunistic bacterial pathogen that causes life-threatening disease in cystic fibrosis patients and immunocompromised individuals.
TextSentencer_T3 323-472 Sentence denotes B. cepacia LPS comprises an O-specific polysaccharide covalently linked to a core oligosaccharide (OS) which in turn is attached to a lipid A moiety.
TextSentencer_T4 473-624 Sentence denotes The complete structure of the LPS core oligosaccharide from B. cepacia serotype O4 was investigated by detailed NMR and mass spectrometry (MS) methods.
TextSentencer_T5 625-759 Sentence denotes High- (HMW) and low-molecular-weight (LMW) OSs were obtained by deacylation, dephosphorylation, and reducing-end reduction of the LPS.
TextSentencer_T6 760-1000 Sentence denotes Glycan and NMR analyses established that both OSs contain a common inner-core structure consisting of D-glucose, L-glycero-D-manno-heptose, D-glycero-D-manno-heptose, 3-deoxy-D-manno-octulsonic acid, and D-glycero-D-talo-2-octulosonic acid.
TextSentencer_T7 1001-1117 Sentence denotes The structure of the LMW OS differed from that of the HMW OS in that it lacks a tetra-rhamnosyl GlcNAc OS extension.
TextSentencer_T8 1118-1278 Sentence denotes These structural conclusions were confirmed by tandem MS analyses of the two OS fractions as well as an OS fraction obtained by alkaline deacylation of the LPS.
TextSentencer_T9 1279-1438 Sentence denotes The location of a phosphoethanolamine substituent in the core region was determined by ESI-MS and methylation analysis of O-deacylated LPS and core OS samples.
TextSentencer_T10 1439-1581 Sentence denotes A polyclonal antibody to B. cepacia serotype O4 core OS was cross-reactive with several other serotypes indicating common structural features.
T1 0-103 Sentence denotes Structural elucidation of the novel core oligosaccharide from LPS of Burkholderia cepacia serogroup O4.
T2 104-322 Sentence denotes Lipopolysaccharide (LPS) is an important virulence factor of Burkholderia cepacia, an opportunistic bacterial pathogen that causes life-threatening disease in cystic fibrosis patients and immunocompromised individuals.
T3 323-472 Sentence denotes B. cepacia LPS comprises an O-specific polysaccharide covalently linked to a core oligosaccharide (OS) which in turn is attached to a lipid A moiety.
T4 473-624 Sentence denotes The complete structure of the LPS core oligosaccharide from B. cepacia serotype O4 was investigated by detailed NMR and mass spectrometry (MS) methods.
T5 625-759 Sentence denotes High- (HMW) and low-molecular-weight (LMW) OSs were obtained by deacylation, dephosphorylation, and reducing-end reduction of the LPS.
T6 760-1000 Sentence denotes Glycan and NMR analyses established that both OSs contain a common inner-core structure consisting of D-glucose, L-glycero-D-manno-heptose, D-glycero-D-manno-heptose, 3-deoxy-D-manno-octulsonic acid, and D-glycero-D-talo-2-octulosonic acid.
T7 1001-1117 Sentence denotes The structure of the LMW OS differed from that of the HMW OS in that it lacks a tetra-rhamnosyl GlcNAc OS extension.
T8 1118-1278 Sentence denotes These structural conclusions were confirmed by tandem MS analyses of the two OS fractions as well as an OS fraction obtained by alkaline deacylation of the LPS.
T9 1279-1438 Sentence denotes The location of a phosphoethanolamine substituent in the core region was determined by ESI-MS and methylation analysis of O-deacylated LPS and core OS samples.
T10 1439-1581 Sentence denotes A polyclonal antibody to B. cepacia serotype O4 core OS was cross-reactive with several other serotypes indicating common structural features.
T1 0-103 Sentence denotes Structural elucidation of the novel core oligosaccharide from LPS of Burkholderia cepacia serogroup O4.
T2 104-322 Sentence denotes Lipopolysaccharide (LPS) is an important virulence factor of Burkholderia cepacia, an opportunistic bacterial pathogen that causes life-threatening disease in cystic fibrosis patients and immunocompromised individuals.
T3 323-472 Sentence denotes B. cepacia LPS comprises an O-specific polysaccharide covalently linked to a core oligosaccharide (OS) which in turn is attached to a lipid A moiety.
T4 473-624 Sentence denotes The complete structure of the LPS core oligosaccharide from B. cepacia serotype O4 was investigated by detailed NMR and mass spectrometry (MS) methods.
T5 625-759 Sentence denotes High- (HMW) and low-molecular-weight (LMW) OSs were obtained by deacylation, dephosphorylation, and reducing-end reduction of the LPS.
T6 760-1000 Sentence denotes Glycan and NMR analyses established that both OSs contain a common inner-core structure consisting of D-glucose, L-glycero-D-manno-heptose, D-glycero-D-manno-heptose, 3-deoxy-D-manno-octulsonic acid, and D-glycero-D-talo-2-octulosonic acid.
T7 1001-1117 Sentence denotes The structure of the LMW OS differed from that of the HMW OS in that it lacks a tetra-rhamnosyl GlcNAc OS extension.
T8 1118-1278 Sentence denotes These structural conclusions were confirmed by tandem MS analyses of the two OS fractions as well as an OS fraction obtained by alkaline deacylation of the LPS.
T9 1279-1438 Sentence denotes The location of a phosphoethanolamine substituent in the core region was determined by ESI-MS and methylation analysis of O-deacylated LPS and core OS samples.
T10 1439-1581 Sentence denotes A polyclonal antibody to B. cepacia serotype O4 core OS was cross-reactive with several other serotypes indicating common structural features.

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 69-89 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC347 denotes Burkholderia cepacia
_T2 69-89 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC372 denotes Burkholderia cepacia
_T3 69-89 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC096 denotes Burkholderia cepacia
_T4 69-89 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC464 denotes Burkholderia cepacia
_T5 69-89 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC385 denotes Burkholderia cepacia
_T6 69-89 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC420 denotes Burkholderia cepacia
_T7 69-89 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC065 denotes Burkholderia cepacia
_T8 165-185 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC065 denotes Burkholderia cepacia
_T9 165-185 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC385 denotes Burkholderia cepacia
_T10 165-185 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC420 denotes Burkholderia cepacia
_T11 165-185 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC096 denotes Burkholderia cepacia
_T12 165-185 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC464 denotes Burkholderia cepacia
_T13 165-185 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC347 denotes Burkholderia cepacia
_T14 165-185 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC372 denotes Burkholderia cepacia

ICD10

Id Subject Object Predicate Lexical cue
T1 263-278 http://purl.bioontology.org/ontology/ICD10/E84 denotes cystic fibrosis
T2 263-278 http://purl.bioontology.org/ontology/ICD10/E84.9 denotes cystic fibrosis

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 41-56 FMAID:196731 denotes oligosaccharide
_T2 41-56 FMAID:82742 denotes oligosaccharide
_T3 104-122 FMAID:196735 denotes Lipopolysaccharide
_T4 104-122 FMAID:82746 denotes Lipopolysaccharide
_T5 104-122 FMAID:196779 denotes Lipopolysaccharide
_T6 104-122 FMAID:82785 denotes Lipopolysaccharide
_T7 362-376 FMAID:82746 denotes polysaccharide
_T8 362-376 FMAID:82785 denotes polysaccharide
_T9 362-376 FMAID:196779 denotes polysaccharide
_T10 362-376 FMAID:196735 denotes polysaccharide
_T11 405-420 FMAID:82742 denotes oligosaccharide
_T12 405-420 FMAID:196731 denotes oligosaccharide
_T13 422-424 FMAID:219318 denotes OS
_T14 422-424 FMAID:193924 denotes OS
_T15 457-462 FMAID:67264 denotes lipid
_T16 457-462 FMAID:165448 denotes lipid
_T17 512-527 FMAID:82742 denotes oligosaccharide
_T18 512-527 FMAID:196731 denotes oligosaccharide
_T19 668-671 FMAID:193924 denotes OSs
_T20 668-671 FMAID:219318 denotes OSs
_T21 806-809 FMAID:193924 denotes OSs
_T22 806-809 FMAID:219318 denotes OSs
_T23 864-871 FMAID:82743 denotes glucose
_T24 864-871 FMAID:196732 denotes glucose
_T25 885-890 FMAID:226916 denotes manno
_T26 912-917 FMAID:226916 denotes manno
_T27 937-942 FMAID:226916 denotes manno
_T28 1026-1028 FMAID:219318 denotes OS
_T29 1026-1028 FMAID:193924 denotes OS
_T30 1059-1061 FMAID:219318 denotes OS
_T31 1059-1061 FMAID:193924 denotes OS
_T32 1104-1106 FMAID:219318 denotes OS
_T33 1104-1106 FMAID:193924 denotes OS
_T34 1195-1197 FMAID:219318 denotes OS
_T35 1195-1197 FMAID:193924 denotes OS
_T36 1222-1224 FMAID:219318 denotes OS
_T37 1222-1224 FMAID:193924 denotes OS
_T38 1297-1316 FMAID:199787 denotes phosphoethanolamine
_T39 1297-1316 FMAID:196775 denotes phosphoethanolamine
_T40 1297-1316 FMAID:82781 denotes phosphoethanolamine
_T41 1427-1429 FMAID:219318 denotes OS
_T42 1427-1429 FMAID:193924 denotes OS
_T43 1452-1460 FMAID:167180 denotes antibody
_T44 1492-1494 FMAID:219318 denotes OS
_T45 1492-1494 FMAID:193924 denotes OS

uniprot-human

Id Subject Object Predicate Lexical cue
T1 612-614 http://www.uniprot.org/uniprot/Q99707 denotes MS
T2 1172-1174 http://www.uniprot.org/uniprot/Q99707 denotes MS
T3 1370-1372 http://www.uniprot.org/uniprot/Q99707 denotes MS
T4 1366-1369 http://www.uniprot.org/uniprot/P19957 denotes ESI

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 612-614 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T2 1172-1174 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T3 1370-1372 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 69-81 http://purl.bioontology.org/ontology/NCBITAXON/32008 denotes Burkholderia
T2 69-81 http://purl.bioontology.org/ontology/NCBITAXON/219649 denotes Burkholderia
T3 69-81 http://purl.bioontology.org/ontology/NCBITAXON/311230 denotes Burkholderia
T4 69-81 http://purl.bioontology.org/ontology/NCBITAXON/948107 denotes Burkholderia
T5 69-81 http://purl.bioontology.org/ontology/NCBITAXON/482957 denotes Burkholderia
T6 69-81 http://purl.bioontology.org/ontology/NCBITAXON/386056 denotes Burkholderia
T7 69-81 http://purl.bioontology.org/ontology/NCBITAXON/337 denotes Burkholderia
T8 69-81 http://purl.bioontology.org/ontology/NCBITAXON/634127 denotes Burkholderia
T9 69-89 http://purl.bioontology.org/ontology/NCBITAXON/87882 denotes Burkholderia cepacia
T10 69-89 http://purl.bioontology.org/ontology/NCBITAXON/292 denotes Burkholderia cepacia
T11 69-89 http://purl.bioontology.org/ontology/NCBITAXON/215535 denotes Burkholderia cepacia
T12 165-177 http://purl.bioontology.org/ontology/NCBITAXON/634127 denotes Burkholderia
T13 165-177 http://purl.bioontology.org/ontology/NCBITAXON/311230 denotes Burkholderia
T14 165-177 http://purl.bioontology.org/ontology/NCBITAXON/337 denotes Burkholderia
T15 165-177 http://purl.bioontology.org/ontology/NCBITAXON/386056 denotes Burkholderia
T16 165-177 http://purl.bioontology.org/ontology/NCBITAXON/482957 denotes Burkholderia
T17 165-177 http://purl.bioontology.org/ontology/NCBITAXON/219649 denotes Burkholderia
T18 165-177 http://purl.bioontology.org/ontology/NCBITAXON/948107 denotes Burkholderia
T19 165-177 http://purl.bioontology.org/ontology/NCBITAXON/32008 denotes Burkholderia
T20 165-185 http://purl.bioontology.org/ontology/NCBITAXON/87882 denotes Burkholderia cepacia
T21 165-185 http://purl.bioontology.org/ontology/NCBITAXON/215535 denotes Burkholderia cepacia
T22 165-185 http://purl.bioontology.org/ontology/NCBITAXON/292 denotes Burkholderia cepacia
T23 1081-1086 http://purl.bioontology.org/ontology/NCBITAXON/1310384 denotes tetra
T24 1081-1086 http://purl.bioontology.org/ontology/NCBITAXON/85284 denotes tetra

GO-BP

Id Subject Object Predicate Lexical cue
T1 145-154 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T2 145-154 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T3 702-719 http://purl.obolibrary.org/obo/GO_0016311 denotes dephosphorylation
T4 1377-1388 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation

GO-MF

Id Subject Object Predicate Lexical cue
T1 1452-1460 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T1 36-40 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T2 400-404 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T3 507-511 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T4 833-837 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T5 1336-1340 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T6 1422-1426 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T7 1487-1491 http://purl.obolibrary.org/obo/GO_0019013 denotes core

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 1107-1116 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extension

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 1097-1103 chem:24139 denotes GlcNAc

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 62-65 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T2 124-127 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T3 334-337 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T4 503-506 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T5 755-758 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T6 1274-1277 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS
T7 1414-1417 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 1097-1103 "http://rdf.glycoinfo.org/glycan/G26693XF" denotes GlcNAc
GlycanIUPAC_T2 1097-1103 "http://rdf.glycoinfo.org/glycan/G01864SU" denotes GlcNAc
GlycanIUPAC_T3 1097-1103 "http://rdf.glycoinfo.org/glycan/G17605FD" denotes GlcNAc
GlycanIUPAC_T4 1097-1103 "http://rdf.glycoinfo.org/glycan/G41950LU" denotes GlcNAc
GlycanIUPAC_T5 1097-1103 "http://rdf.glycoinfo.org/glycan/G57195RJ" denotes GlcNAc
GlycanIUPAC_T6 1097-1103 "http://rdf.glycoinfo.org/glycan/G85391SA" denotes GlcNAc
GlycanIUPAC_T7 1097-1103 "http://rdf.glycoinfo.org/glycan/G89565QL" denotes GlcNAc
GlycanIUPAC_T8 1097-1103 "http://rdf.glycoinfo.org/glycan/G80869MR" denotes GlcNAc
GlycanIUPAC_T9 1097-1103 "http://rdf.glycoinfo.org/glycan/G55978NL" denotes GlcNAc
GlycanIUPAC_T10 1097-1103 "http://rdf.glycoinfo.org/glycan/G54644LT" denotes GlcNAc
GlycanIUPAC_T11 1097-1103 "http://rdf.glycoinfo.org/glycan/G25694UG" denotes GlcNAc
GlycanIUPAC_T12 1097-1103 "http://rdf.glycoinfo.org/glycan/G25126RB" denotes GlcNAc
GlycanIUPAC_T13 1097-1103 "http://rdf.glycoinfo.org/glycan/G51848AD" denotes GlcNAc
GlycanIUPAC_T14 1097-1103 "http://rdf.glycoinfo.org/glycan/G94667GM" denotes GlcNAc
GlycanIUPAC_T15 1097-1103 "http://rdf.glycoinfo.org/glycan/G30124BO" denotes GlcNAc
GlycanIUPAC_T16 1097-1103 "http://rdf.glycoinfo.org/glycan/G82777EZ" denotes GlcNAc
GlycanIUPAC_T17 1097-1103 "http://rdf.glycoinfo.org/glycan/G10151YZ" denotes GlcNAc
GlycanIUPAC_T18 1097-1103 "http://rdf.glycoinfo.org/glycan/G17585ZM" denotes GlcNAc
GlycanIUPAC_T19 1097-1103 "http://rdf.glycoinfo.org/glycan/G04411CJ" denotes GlcNAc
GlycanIUPAC_T20 1097-1103 "http://rdf.glycoinfo.org/glycan/G38254HJ" denotes GlcNAc
GlycanIUPAC_T21 1097-1103 "http://rdf.glycoinfo.org/glycan/G75188FS" denotes GlcNAc
GlycanIUPAC_T22 1097-1103 "http://rdf.glycoinfo.org/glycan/G70374VG" denotes GlcNAc
GlycanIUPAC_T23 1097-1103 "http://rdf.glycoinfo.org/glycan/G45176LJ" denotes GlcNAc
GlycanIUPAC_T24 1097-1103 "http://rdf.glycoinfo.org/glycan/G30874VW" denotes GlcNAc
GlycanIUPAC_T25 1097-1103 "http://rdf.glycoinfo.org/glycan/G69333MI" denotes GlcNAc
GlycanIUPAC_T26 1097-1103 "http://rdf.glycoinfo.org/glycan/G10676XO" denotes GlcNAc
GlycanIUPAC_T27 1097-1103 "http://rdf.glycoinfo.org/glycan/G14843DJ" denotes GlcNAc
GlycanIUPAC_T28 1097-1103 "http://rdf.glycoinfo.org/glycan/G47546FR" denotes GlcNAc
GlycanIUPAC_T29 1097-1103 "http://rdf.glycoinfo.org/glycan/G73695ZM" denotes GlcNAc
GlycanIUPAC_T30 1097-1103 "http://rdf.glycoinfo.org/glycan/G31923TJ" denotes GlcNAc
GlycanIUPAC_T31 1097-1103 "http://rdf.glycoinfo.org/glycan/G60519EP" denotes GlcNAc
GlycanIUPAC_T32 1097-1103 "http://rdf.glycoinfo.org/glycan/G07933IA" denotes GlcNAc
GlycanIUPAC_T33 1097-1103 "http://rdf.glycoinfo.org/glycan/G40745NH" denotes GlcNAc
GlycanIUPAC_T34 1097-1103 "http://rdf.glycoinfo.org/glycan/G54496YV" denotes GlcNAc
GlycanIUPAC_T35 1097-1103 "http://rdf.glycoinfo.org/glycan/G62953SQ" denotes GlcNAc
GlycanIUPAC_T36 1097-1103 "http://rdf.glycoinfo.org/glycan/G70070AY" denotes GlcNAc
GlycanIUPAC_T37 1097-1103 "http://rdf.glycoinfo.org/glycan/G78792WC" denotes GlcNAc
GlycanIUPAC_T38 1097-1103 "http://rdf.glycoinfo.org/glycan/G25238AV" denotes GlcNAc
GlycanIUPAC_T39 1097-1103 "http://rdf.glycoinfo.org/glycan/G40510DP" denotes GlcNAc
GlycanIUPAC_T40 1097-1103 "http://rdf.glycoinfo.org/glycan/G61120TK" denotes GlcNAc
GlycanIUPAC_T41 1097-1103 "http://rdf.glycoinfo.org/glycan/G41342KV" denotes GlcNAc
GlycanIUPAC_T42 1097-1103 "http://rdf.glycoinfo.org/glycan/G90703NA" denotes GlcNAc
GlycanIUPAC_T43 1097-1103 "http://rdf.glycoinfo.org/glycan/G01591HR" denotes GlcNAc
GlycanIUPAC_T44 1097-1103 "http://rdf.glycoinfo.org/glycan/G56520XN" denotes GlcNAc
GlycanIUPAC_T45 1097-1103 "http://rdf.glycoinfo.org/glycan/G81830JX" denotes GlcNAc

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1107-1116 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extension

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 263-278 Disease denotes cystic fibrosis http://purl.obolibrary.org/obo/MONDO_0009061

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 69-89 OrganismTaxon denotes Burkholderia cepacia 292
T2 165-185 OrganismTaxon denotes Burkholderia cepacia 292

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1107-1116 Body_part denotes extension http://purl.obolibrary.org/obo/UBERON_2000106