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PubMed:19110417 JSONTXT

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sonoma2

Id Subject Object Predicate Lexical cue
T0 15-25 VAR denotes variations
T1 33-52 GENE denotes cytochrome P450 1A1
T2 62-66 REG denotes risk
T3 70-94 DISEASE denotes hepatocellular carcinoma
T4 120-139 GENE denotes Cytochrome P450 1A1
T5 145-150 REG denotes major
T6 165-178 MPA denotes bioactivation
T7 182-206 MPA denotes exogenous procarcinogens
T8 210-234 DISEASE denotes hepatocellular carcinoma
T9 236-239 DISEASE denotes HCC
T10 255-267 REG denotes contribution
T11 286-294 VAR denotes variants
T12 298-304 GENE denotes CYP1A1
T13 312-315 DISEASE denotes HCC
T14 316-320 MPA denotes risk
T15 413-424 INTERACTION denotes association
T16 433-436 DISEASE denotes HCC
T17 481-494 VAR denotes polymorphisms
T18 496-500 VAR denotes SNPs
T19 505-511 GENE denotes CYP1A1
T20 521-525 REG denotes risk
T21 529-535 GENE denotes CYP1A1
T22 536-557 VAR denotes haplotypes/diplotypes
T23 591-594 DISEASE denotes HCC
T24 613-624 DISEASE denotes cancer-free
T25 666-687 VAR denotes Haplotypes/diplotypes
T26 769-773 REG denotes risk
T27 856-864 REG denotes detected
T28 868-877 POSREG denotes increased
T29 878-881 DISEASE denotes HCC
T30 882-886 MPA denotes risk
T31 890-907 VAR denotes rs4646421 variant
T32 949-966 VAR denotes rs2198843 variant
T33 1011-1018 NEGREG denotes reduced
T34 1019-1023 MPA denotes risk
T35 1027-1030 DISEASE denotes HCC
T36 1059-1069 REG denotes associated
T37 1075-1085 VAR denotes homozygote
T38 1098-1115 VAR denotes rs4886605 variant
T39 1153-1161 REG denotes observed
T40 1182-1191 VAR denotes rs4646421
T41 1224-1233 VAR denotes rs4886605
T42 1291-1297 GENE denotes CYP1A1
T43 1298-1312 VAR denotes haplotype CCAG
T44 1318-1332 VAR denotes haplotype TTGC
T45 1333-1342 REG denotes conferred
T46 1346-1355 POSREG denotes increased
T47 1356-1360 MPA denotes risk
T48 1364-1367 DISEASE denotes HCC
T49 1412-1431 VAR denotes TTGC/TTGC diplotype
T50 1432-1441 REG denotes conferred
T51 1445-1454 POSREG denotes increased
T52 1455-1459 MPA denotes risk
T53 1463-1466 DISEASE denotes HCC
T54 1481-1500 VAR denotes diplotype CCAG/CCAG
T55 1558-1577 VAR denotes diplotype TTAC/CCAG
T56 1583-1592 REG denotes conferred
T57 1596-1605 POSREG denotes increased
T58 1606-1610 MPA denotes risk
T59 1614-1617 DISEASE denotes HCC
T60 1698-1706 VAR denotes variants
T61 1710-1716 GENE denotes CYP1A1
T62 1721-1729 REG denotes modulate
T63 1734-1738 REG denotes risk
T64 1742-1752 REG denotes developing
T65 1753-1756 DISEASE denotes HCC
R0 T0 T2 CauseOf variations,risk
R1 T1 T0 ThemeOf cytochrome P450 1A1,variations
R2 T3 T2 ThemeOf hepatocellular carcinoma,risk
R3 T6 T5 ThemeOf bioactivation,major
R4 T6 T7 ThemeOf bioactivation,exogenous procarcinogens
R5 T7 T5 ThemeOf exogenous procarcinogens,major
R6 T8 T5 ThemeOf hepatocellular carcinoma,major
R7 T8 T6 ThemeOf hepatocellular carcinoma,bioactivation
R8 T8 T7 ThemeOf hepatocellular carcinoma,exogenous procarcinogens
R9 T9 T5 ThemeOf HCC,major
R10 T9 T6 ThemeOf HCC,bioactivation
R11 T9 T7 ThemeOf HCC,exogenous procarcinogens
R12 T10 T11 ThemeOf contribution,variants
R13 T13 T11 ThemeOf HCC,variants
R14 T11 T14 CauseOf variants,risk
R15 T12 T10 ThemeOf CYP1A1,contribution
R16 T12 T11 ThemeOf CYP1A1,variants
R17 T12 T14 ThemeOf CYP1A1,risk
R18 T13 T10 ThemeOf HCC,contribution
R19 T13 T14 ThemeOf HCC,risk
R20 T16 T15 ThemeOf HCC,association
R21 T17 T18 ThemeOf polymorphisms,SNPs
R22 T19 T15 ThemeOf CYP1A1,association
R23 T19 T17 ThemeOf CYP1A1,polymorphisms
R24 T19 T18 ThemeOf CYP1A1,SNPs
R25 T21 T20 ThemeOf CYP1A1,risk
R26 T20 T22 ThemeOf risk,haplotypes/diplotypes
R27 T21 T18 ThemeOf CYP1A1,SNPs
R28 T21 T22 ThemeOf CYP1A1,haplotypes/diplotypes
R29 T23 T20 ThemeOf HCC,risk
R30 T23 T22 ThemeOf HCC,haplotypes/diplotypes
R31 T28 T27 ThemeOf increased,detected
R32 T30 T28 ThemeOf risk,increased
R33 T31 T28 CauseOf rs4646421 variant,increased
R34 T29 T27 ThemeOf HCC,detected
R35 T29 T28 ThemeOf HCC,increased
R36 T29 T30 ThemeOf HCC,risk
R37 T29 T31 ThemeOf HCC,rs4646421 variant
R38 T30 T27 ThemeOf risk,detected
R39 T30 T31 ThemeOf risk,rs4646421 variant
R40 T34 T33 ThemeOf risk,reduced
R41 T34 T36 ThemeOf risk,associated
R42 T35 T33 ThemeOf HCC,reduced
R43 T35 T34 ThemeOf HCC,risk
R44 T35 T36 ThemeOf HCC,associated
R45 T36 T37 ThemeOf associated,homozygote
R46 T37 T28 CauseOf homozygote,increased
R47 T37 T33 CauseOf homozygote,reduced
R48 T38 T37 ThemeOf rs4886605 variant,homozygote
R49 T42 T43 ThemeOf CYP1A1,haplotype CCAG
R50 T42 T44 ThemeOf CYP1A1,haplotype TTGC
R51 T43 T45 CauseOf haplotype CCAG,conferred
R52 T43 T46 CauseOf haplotype CCAG,increased
R53 T43 T47 CauseOf haplotype CCAG,risk
R54 T44 T45 CauseOf haplotype TTGC,conferred
R55 T44 T46 CauseOf haplotype TTGC,increased
R56 T44 T47 CauseOf haplotype TTGC,risk
R57 T47 T46 ThemeOf risk,increased
R58 T47 T45 ThemeOf risk,conferred
R59 T48 T45 ThemeOf HCC,conferred
R60 T48 T46 ThemeOf HCC,increased
R61 T48 T47 ThemeOf HCC,risk
R62 T49 T51 CauseOf TTGC/TTGC diplotype,increased
R63 T49 T52 CauseOf TTGC/TTGC diplotype,risk
R64 T52 T51 ThemeOf risk,increased
R65 T52 T50 ThemeOf risk,conferred
R66 T53 T50 ThemeOf HCC,conferred
R67 T53 T51 ThemeOf HCC,increased
R68 T53 T52 ThemeOf HCC,risk
R69 T53 T54 ThemeOf HCC,diplotype CCAG/CCAG
R70 T54 T50 CauseOf diplotype CCAG/CCAG,conferred
R71 T54 T51 CauseOf diplotype CCAG/CCAG,increased
R72 T55 T57 CauseOf diplotype TTAC/CCAG,increased
R73 T55 T58 CauseOf diplotype TTAC/CCAG,risk
R74 T57 T56 ThemeOf increased,conferred
R75 T58 T57 ThemeOf risk,increased
R76 T58 T56 ThemeOf risk,conferred
R77 T59 T56 ThemeOf HCC,conferred
R78 T59 T57 ThemeOf HCC,increased
R79 T59 T58 ThemeOf HCC,risk
R80 T60 T62 CauseOf variants,modulate
R81 T60 T63 CauseOf variants,risk
R82 T60 T64 CauseOf variants,developing
R83 T61 T60 ThemeOf CYP1A1,variants
R84 T63 T62 ThemeOf risk,modulate
R85 T64 T63 ThemeOf developing,risk
R86 T64 T62 ThemeOf developing,modulate
R87 T65 T62 ThemeOf HCC,modulate
R88 T65 T63 ThemeOf HCC,risk
R89 T65 T64 ThemeOf HCC,developing

DisGeNET

Id Subject Object Predicate Lexical cue
T0 1710-1716 gene:1543 denotes CYP1A1
T1 1753-1756 disease:C2239176 denotes HCC
R1 T0 T1 associated_with CYP1A1,HCC

DisGeNET5_variant_disease

Id Subject Object Predicate Lexical cue
19110417-6#110#119#geners2198843 949-958 geners2198843 denotes rs2198843
19110417-6#51#60#geners4646421 890-899 geners4646421 denotes rs4646421
19110417-6#39#42#diseaseC2239176 878-881 diseaseC2239176 denotes HCC
19110417-6#188#191#diseaseC2239176 1027-1030 diseaseC2239176 denotes HCC
19110417-6#39#42#diseaseC2239176 878-881 diseaseC2239176 denotes HCC
19110417-6#188#191#diseaseC2239176 1027-1030 diseaseC2239176 denotes HCC
110#119#geners219884339#42#diseaseC2239176 19110417-6#110#119#geners2198843 19110417-6#39#42#diseaseC2239176 associated_with rs2198843,HCC
110#119#geners2198843188#191#diseaseC2239176 19110417-6#110#119#geners2198843 19110417-6#188#191#diseaseC2239176 associated_with rs2198843,HCC
110#119#geners219884339#42#diseaseC2239176 19110417-6#110#119#geners2198843 19110417-6#39#42#diseaseC2239176 associated_with rs2198843,HCC
110#119#geners2198843188#191#diseaseC2239176 19110417-6#110#119#geners2198843 19110417-6#188#191#diseaseC2239176 associated_with rs2198843,HCC
51#60#geners464642139#42#diseaseC2239176 19110417-6#51#60#geners4646421 19110417-6#39#42#diseaseC2239176 associated_with rs4646421,HCC
51#60#geners4646421188#191#diseaseC2239176 19110417-6#51#60#geners4646421 19110417-6#188#191#diseaseC2239176 associated_with rs4646421,HCC
51#60#geners464642139#42#diseaseC2239176 19110417-6#51#60#geners4646421 19110417-6#39#42#diseaseC2239176 associated_with rs4646421,HCC
51#60#geners4646421188#191#diseaseC2239176 19110417-6#51#60#geners4646421 19110417-6#188#191#diseaseC2239176 associated_with rs4646421,HCC

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
19110417-0#33#52#gene1543 33-52 gene1543 denotes cytochrome P450 1A1
19110417-0#70#94#diseaseC2239176 70-94 diseaseC2239176 denotes hepatocellular carcinoma
33#52#gene154370#94#diseaseC2239176 19110417-0#33#52#gene1543 19110417-0#70#94#diseaseC2239176 associated_with cytochrome P450 1A1,hepatocellular carcinoma

PubTator4TogoVar

Id Subject Object Predicate Lexical cue resolved_to
42 890-899 SNP denotes rs4646421 tmVar:rs4646421;VariantGroup:0;CorrespondingGene:1543;RS#:4646421;CorrespondingSpecies:9606
43 949-958 SNP denotes rs2198843 tmVar:rs2198843;VariantGroup:1;RS#:2198843
45 1098-1107 SNP denotes rs4886605 tmVar:rs4886605;VariantGroup:2;RS#:4886605
46 1182-1191 SNP denotes rs4646421 tmVar:rs4646421;VariantGroup:0;CorrespondingGene:1543;RS#:4646421;CorrespondingSpecies:9606
47 1224-1233 SNP denotes rs4886605 tmVar:rs4886605;VariantGroup:2;RS#:4886605

PubTatorOnTogoVar

Id Subject Object Predicate Lexical cue resolved_to
42 890-899 SNP denotes rs4646421 tmVar:rs4646421;VariantGroup:0;CorrespondingGene:1543;RS#:4646421;CorrespondingSpecies:9606
43 949-958 SNP denotes rs2198843 tmVar:rs2198843;VariantGroup:1;RS#:2198843
45 1098-1107 SNP denotes rs4886605 tmVar:rs4886605;VariantGroup:2;RS#:4886605
46 1182-1191 SNP denotes rs4646421 tmVar:rs4646421;VariantGroup:0;CorrespondingGene:1543;RS#:4646421;CorrespondingSpecies:9606
47 1224-1233 SNP denotes rs4886605 tmVar:rs4886605;VariantGroup:2;RS#:4886605
T1 890-899 SNP denotes rs4646421 tmVar:rs4646421;VariantGroup:0;CorrespondingGene:1543;RS#:4646421;CorrespondingSpecies:9606
T2 949-958 SNP denotes rs2198843 tmVar:rs2198843;VariantGroup:1;RS#:2198843
T3 1098-1107 SNP denotes rs4886605 tmVar:rs4886605;VariantGroup:2;RS#:4886605
T4 1182-1191 SNP denotes rs4646421 tmVar:rs4646421;VariantGroup:0;CorrespondingGene:1543;RS#:4646421;CorrespondingSpecies:9606
T5 1224-1233 SNP denotes rs4886605 tmVar:rs4886605;VariantGroup:2;RS#:4886605