> top > docs > PubMed:19053534 > annotations

PubMed:19053534 JSONTXT

Annnotations TAB JSON ListView MergeView

GlyCosmos15-Species

Id Subject Object Predicate Lexical cue db_id
1 21-37 Species denotes Escherichia coli 562
18 115-123 Species denotes bacteria 629395
20 208-216 Species denotes bacteria 629395
21 259-275 Species denotes Escherichia coli 562
22 325-333 Species denotes bacteria 629395
25 515-522 Species denotes E. coli 562
26 566-574 Species denotes bacteria 629395
27 596-602 Species denotes bovine 9913
29 779-787 Species denotes bacteria 629395
30 860-868 Species denotes bacteria 629395
31 1099-1106 Species denotes E. coli 562

sentences

Id Subject Object Predicate Lexical cue
T1 0-87 Sentence denotes Proteomic changes in Escherichia coli when grown in fresh milk versus laboratory media.
T2 88-174 Sentence denotes To establish an infection, bacteria must first adapt to the host environment and grow.
T3 175-239 Sentence denotes For mastitis, the media in which bacteria must adapt to is milk.
T4 240-419 Sentence denotes Mammary pathogenic Escherichia coli may express factors that are important for these bacteria to grow in milk and establish both acute and chronic infections of the mammary gland.
T5 420-608 Sentence denotes We have used shotgun expression proteomics to determine the changes in protein expression when E. coli were grown in laboratory media compared to bacteria grown in whole fresh bovine milk.
T6 609-670 Sentence denotes We report the expression data of approximately 1000 proteins.
T7 671-807 Sentence denotes We found many proteins involved in the metabolism of lactose and various amino acids were up-regulated when bacteria were grown in milk.
T8 808-1067 Sentence denotes In addition, the LuxS protein was up-regulated when bacteria were grown in milk; this protein is associated bacterial quorum sensing as well as the expression of mobility proteins, such as flagellar components, and a number of genes associated with virulence.
T9 1068-1247 Sentence denotes Growth of a mammary pathogenic E. coli in milk results in the up- and down-regulation of hundreds of proteins, some of which may be important to the pathogenesis of this organism.
T1 0-87 Sentence denotes Proteomic changes in Escherichia coli when grown in fresh milk versus laboratory media.
T2 88-174 Sentence denotes To establish an infection, bacteria must first adapt to the host environment and grow.
T3 175-239 Sentence denotes For mastitis, the media in which bacteria must adapt to is milk.
T4 240-419 Sentence denotes Mammary pathogenic Escherichia coli may express factors that are important for these bacteria to grow in milk and establish both acute and chronic infections of the mammary gland.
T5 420-608 Sentence denotes We have used shotgun expression proteomics to determine the changes in protein expression when E. coli were grown in laboratory media compared to bacteria grown in whole fresh bovine milk.
T6 609-670 Sentence denotes We report the expression data of approximately 1000 proteins.
T7 671-807 Sentence denotes We found many proteins involved in the metabolism of lactose and various amino acids were up-regulated when bacteria were grown in milk.
T8 808-1067 Sentence denotes In addition, the LuxS protein was up-regulated when bacteria were grown in milk; this protein is associated bacterial quorum sensing as well as the expression of mobility proteins, such as flagellar components, and a number of genes associated with virulence.
T9 1068-1247 Sentence denotes Growth of a mammary pathogenic E. coli in milk results in the up- and down-regulation of hundreds of proteins, some of which may be important to the pathogenesis of this organism.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 405-418 http://purl.obolibrary.org/obo/MAT_0000073 denotes mammary gland
T2 413-418 http://purl.obolibrary.org/obo/MAT_0000021 denotes gland

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 104-113 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T2 179-187 Disease denotes mastitis http://purl.obolibrary.org/obo/MONDO_0006849
T3 387-397 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 724-731 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 405-418 Body_part denotes mammary gland http://purl.obolibrary.org/obo/MAT_0000073

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 179-187 Phenotype denotes mastitis HP:0040407
T2 379-397 Phenotype denotes chronic infections HP:0031035

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 724-731 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE

GlyCosmos15-HP

Id Subject Object Predicate Lexical cue hp_id
T1 179-187 Phenotype denotes mastitis HP:0040407
T2 379-397 Phenotype denotes chronic infections HP:0031035

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 58-62 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T2 234-238 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T3 345-349 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T4 405-418 Body_part denotes mammary gland http://purl.obolibrary.org/obo/UBERON_0001911|http://purl.obolibrary.org/obo/UBERON_0005200
T6 603-607 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T7 802-806 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T8 883-887 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T9 1110-1114 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T10 1238-1246 Body_part denotes organism http://purl.obolibrary.org/obo/UBERON_0000468

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 104-113 Disease denotes infection MONDO:0005550
T2 179-187 Disease denotes mastitis MONDO:0006849
T3 387-397 Disease denotes infections MONDO:0005550

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-87 Sentence denotes Proteomic changes in Escherichia coli when grown in fresh milk versus laboratory media.
T2 88-174 Sentence denotes To establish an infection, bacteria must first adapt to the host environment and grow.
T3 175-239 Sentence denotes For mastitis, the media in which bacteria must adapt to is milk.
T4 240-419 Sentence denotes Mammary pathogenic Escherichia coli may express factors that are important for these bacteria to grow in milk and establish both acute and chronic infections of the mammary gland.
T5 420-608 Sentence denotes We have used shotgun expression proteomics to determine the changes in protein expression when E. coli were grown in laboratory media compared to bacteria grown in whole fresh bovine milk.
T6 609-670 Sentence denotes We report the expression data of approximately 1000 proteins.
T7 671-807 Sentence denotes We found many proteins involved in the metabolism of lactose and various amino acids were up-regulated when bacteria were grown in milk.
T8 808-1067 Sentence denotes In addition, the LuxS protein was up-regulated when bacteria were grown in milk; this protein is associated bacterial quorum sensing as well as the expression of mobility proteins, such as flagellar components, and a number of genes associated with virulence.
T9 1068-1247 Sentence denotes Growth of a mammary pathogenic E. coli in milk results in the up- and down-regulation of hundreds of proteins, some of which may be important to the pathogenesis of this organism.

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 21-37 OrganismTaxon denotes Escherichia coli 562
T2 115-123 OrganismTaxon denotes bacteria 2|629395
T4 208-216 OrganismTaxon denotes bacteria 2|629395
T6 259-275 OrganismTaxon denotes Escherichia coli 562
T7 325-333 OrganismTaxon denotes bacteria 2|629395
T9 515-522 OrganismTaxon denotes E. coli 562
T10 566-574 OrganismTaxon denotes bacteria 2|629395
T12 596-602 OrganismTaxon denotes bovine 9913
T13 779-787 OrganismTaxon denotes bacteria 2|629395
T15 860-868 OrganismTaxon denotes bacteria 2|629395
T17 1099-1106 OrganismTaxon denotes E. coli 562

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 58-62 Body_part denotes milk FMA:62100
T2 234-238 Body_part denotes milk FMA:62100
T3 345-349 Body_part denotes milk FMA:62100
T4 405-418 Body_part denotes mammary gland FMA:286452
T5 603-607 Body_part denotes milk FMA:62100
T6 802-806 Body_part denotes milk FMA:62100
T7 883-887 Body_part denotes milk FMA:62100
T8 1110-1114 Body_part denotes milk FMA:62100

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 405-418 Body_part denotes mammary gland http://purl.obolibrary.org/obo/MAT_0000073

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 21-37 OrganismTaxon denotes Escherichia coli 562
T2 115-123 OrganismTaxon denotes bacteria 2|629395
T4 208-216 OrganismTaxon denotes bacteria 2|629395
T6 259-275 OrganismTaxon denotes Escherichia coli 562
T7 325-333 OrganismTaxon denotes bacteria 2|629395
T9 515-522 OrganismTaxon denotes E. coli 562
T10 566-574 OrganismTaxon denotes bacteria 2|629395
T12 596-602 OrganismTaxon denotes bovine 9913
T13 779-787 OrganismTaxon denotes bacteria 2|629395
T15 860-868 OrganismTaxon denotes bacteria 2|629395
T17 1099-1106 OrganismTaxon denotes E. coli 562

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 58-62 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T2 234-238 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T3 345-349 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T4 405-418 Body_part denotes mammary gland http://purl.obolibrary.org/obo/UBERON_0001911|http://purl.obolibrary.org/obo/UBERON_0005200
T6 603-607 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T7 802-806 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T8 883-887 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T9 1110-1114 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T10 1238-1246 Body_part denotes organism http://purl.obolibrary.org/obo/UBERON_0000468