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GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 1139-1146 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ
T2 1175-1194 Glycan_Motif denotes N-acetyllactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO
T3 1261-1267 Glycan_Motif denotes SSEA-4 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G84263XI|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G32254QI
T5 1261-1265 Glycan_Motif denotes SSEA https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G99053DY|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G85497PI
T7 1272-1286 Glycan_Motif denotes sialyl Lewis x https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00054MO
T8 1279-1286 Glycan_Motif denotes Lewis x https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G01187XC|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00051MO

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 1261-1267 http://www.glycoepitope.jp/epitopes/EP0044 denotes SSEA-4
T2 1272-1286 http://www.glycoepitope.jp/epitopes/EP0012 denotes sialyl Lewis x
T3 1279-1286 http://www.glycoepitope.jp/epitopes/EP0011 denotes Lewis x

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-117 Sentence denotes Glycomics of bone marrow-derived mesenchymal stem cells can be used to evaluate their cellular differentiation stage.
TextSentencer_T2 118-193 Sentence denotes Human mesenchymal stem cells (MSCs) are adult multipotent progenitor cells.
TextSentencer_T3 194-347 Sentence denotes They hold an enormous therapeutic potential, but at the moment there is little information on the properties of MSCs, including their surface structures.
TextSentencer_T4 348-500 Sentence denotes In the present study, we analyzed the mesenchymal stem cell glycome by using mass spectrometric profiling as well as a panel of glycan binding proteins.
TextSentencer_T5 501-645 Sentence denotes Structural verifications were obtained by nuclear magnetic resonance spectroscopy, mass spectrometric fragmentation, and glycosidase digestions.
TextSentencer_T6 646-743 Sentence denotes The MSC glycome was compared to the glycome of corresponding osteogenically differentiated cells.
TextSentencer_T7 744-862 Sentence denotes More than one hundred glycan signals were detected in mesenchymal stem cells and osteoblasts differentiated from them.
TextSentencer_T8 863-1047 Sentence denotes The glycan profiles of MSCs and osteoblasts were consistently different in biological replicates, indicating that stem cells and osteoblasts have characteristic glycosylation features.
TextSentencer_T9 1048-1227 Sentence denotes Glycosylation features associated with MSCs rather than differentiated cells included high-mannose type N-glycans, linear poly-N-acetyllactosamine chains and alpha2-3-sialylation.
TextSentencer_T10 1228-1296 Sentence denotes Mesenchymal stem cells expressed SSEA-4 and sialyl Lewis x epitopes.
TextSentencer_T11 1297-1425 Sentence denotes Characteristic glycosylation features that appeared in differentiated osteoblasts included abundant sulfate ester modifications.
TextSentencer_T12 1426-1521 Sentence denotes The results show that glycosylation analysis can be used to evaluate MSC differentiation state.
T1 0-117 Sentence denotes Glycomics of bone marrow-derived mesenchymal stem cells can be used to evaluate their cellular differentiation stage.
T2 118-193 Sentence denotes Human mesenchymal stem cells (MSCs) are adult multipotent progenitor cells.
T3 194-347 Sentence denotes They hold an enormous therapeutic potential, but at the moment there is little information on the properties of MSCs, including their surface structures.
T4 348-500 Sentence denotes In the present study, we analyzed the mesenchymal stem cell glycome by using mass spectrometric profiling as well as a panel of glycan binding proteins.
T5 501-645 Sentence denotes Structural verifications were obtained by nuclear magnetic resonance spectroscopy, mass spectrometric fragmentation, and glycosidase digestions.
T6 646-743 Sentence denotes The MSC glycome was compared to the glycome of corresponding osteogenically differentiated cells.
T7 744-862 Sentence denotes More than one hundred glycan signals were detected in mesenchymal stem cells and osteoblasts differentiated from them.
T8 863-1047 Sentence denotes The glycan profiles of MSCs and osteoblasts were consistently different in biological replicates, indicating that stem cells and osteoblasts have characteristic glycosylation features.
T9 1048-1227 Sentence denotes Glycosylation features associated with MSCs rather than differentiated cells included high-mannose type N-glycans, linear poly-N-acetyllactosamine chains and alpha2-3-sialylation.
T10 1228-1296 Sentence denotes Mesenchymal stem cells expressed SSEA-4 and sialyl Lewis x epitopes.
T11 1297-1425 Sentence denotes Characteristic glycosylation features that appeared in differentiated osteoblasts included abundant sulfate ester modifications.
T12 1426-1521 Sentence denotes The results show that glycosylation analysis can be used to evaluate MSC differentiation state.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1139-1146 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T2 1175-1194 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T3 1261-1267 https://glytoucan.org/Structures/Glycans/G32254QI denotes SSEA-4
T4 1261-1267 https://glytoucan.org/Structures/Glycans/G84263XI denotes SSEA-4
T5 1261-1265 https://glytoucan.org/Structures/Glycans/G85497PI denotes SSEA
T6 1261-1265 https://glytoucan.org/Structures/Glycans/G99053DY denotes SSEA
T7 1272-1286 https://glytoucan.org/Structures/Glycans/G00054MO denotes sialyl Lewis x
T8 1279-1286 https://glytoucan.org/Structures/Glycans/G00051MO denotes Lewis x
T9 1279-1286 https://glytoucan.org/Structures/Glycans/G01187XC denotes Lewis x

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 13-24 http://purl.obolibrary.org/obo/MAT_0000084 denotes bone marrow
T2 13-17 http://purl.obolibrary.org/obo/MAT_0000299 denotes bone
T3 45-55 http://purl.obolibrary.org/obo/MAT_0000185 denotes stem cells
T4 45-49 http://purl.obolibrary.org/obo/MAT_0000239 denotes stem
T5 136-146 http://purl.obolibrary.org/obo/MAT_0000185 denotes stem cells
T6 136-140 http://purl.obolibrary.org/obo/MAT_0000239 denotes stem
T7 398-407 http://purl.obolibrary.org/obo/MAT_0000185 denotes stem cell
T8 398-402 http://purl.obolibrary.org/obo/MAT_0000239 denotes stem
T9 810-820 http://purl.obolibrary.org/obo/MAT_0000185 denotes stem cells
T10 810-814 http://purl.obolibrary.org/obo/MAT_0000239 denotes stem
T11 977-987 http://purl.obolibrary.org/obo/MAT_0000185 denotes stem cells
T12 977-981 http://purl.obolibrary.org/obo/MAT_0000239 denotes stem
T13 1240-1250 http://purl.obolibrary.org/obo/MAT_0000185 denotes stem cells
T14 1240-1244 http://purl.obolibrary.org/obo/MAT_0000239 denotes stem

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 1261-1267 Glycan denotes SSEA-4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G84263XI
T2 1272-1286 Glycan denotes sialyl Lewis x https://api.glycosmos.org/wurcs2image/latest/png/binary/G00054MO

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 1261-1267 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes SSEA-4 http://www.glycoepitope.jp/epitopes/EP0044
T2 1272-1286 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes sialyl Lewis x http://www.glycoepitope.jp/epitopes/EP0012

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 118-123 OrganismTaxon denotes Human 9606

GlyCosmos15-CL

Id Subject Object Predicate Lexical cue cl_id
T1 33-55 Cell denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL:0000134
T2 124-146 Cell denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL:0000134
T3 148-152 Cell denotes MSCs http://purl.obolibrary.org/obo/CL:0000134
T4 176-192 Cell denotes progenitor cells http://purl.obolibrary.org/obo/CL:0011026
T5 306-310 Cell denotes MSCs http://purl.obolibrary.org/obo/CL:0000134
T6 386-407 Cell denotes mesenchymal stem cell http://purl.obolibrary.org/obo/CL:0000134
T7 398-407 Cell denotes stem cell http://purl.obolibrary.org/obo/CL:0000034
T8 798-820 Cell denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL:0000134
T9 825-836 Cell denotes osteoblasts http://purl.obolibrary.org/obo/CL:0000062
T10 886-890 Cell denotes MSCs http://purl.obolibrary.org/obo/CL:0000134
T11 895-906 Cell denotes osteoblasts http://purl.obolibrary.org/obo/CL:0000062
T12 977-987 Cell denotes stem cells http://purl.obolibrary.org/obo/CL:0000034
T13 992-1003 Cell denotes osteoblasts http://purl.obolibrary.org/obo/CL:0000062
T14 1087-1091 Cell denotes MSCs http://purl.obolibrary.org/obo/CL:0000134
T15 1170-1174 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T17 1228-1250 Cell denotes Mesenchymal stem cells http://purl.obolibrary.org/obo/CL:0000134
T18 1367-1378 Cell denotes osteoblasts http://purl.obolibrary.org/obo/CL:0000062

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 13-24 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T2 33-55 Body_part denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL_0000134
T3 124-146 Body_part denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL_0000134
T4 148-152 Body_part denotes MSCs http://purl.obolibrary.org/obo/CL_0000134
T5 176-192 Body_part denotes progenitor cells http://purl.obolibrary.org/obo/CL_0011026
T6 306-310 Body_part denotes MSCs http://purl.obolibrary.org/obo/CL_0000134
T7 328-346 Body_part denotes surface structures http://purl.obolibrary.org/obo/UBERON_0003102
T8 386-407 Body_part denotes mesenchymal stem cell http://purl.obolibrary.org/obo/CL_0000134
T9 798-820 Body_part denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL_0000134
T10 825-836 Body_part denotes osteoblasts http://purl.obolibrary.org/obo/CL_0000062
T11 886-890 Body_part denotes MSCs http://purl.obolibrary.org/obo/CL_0000134
T12 895-906 Body_part denotes osteoblasts http://purl.obolibrary.org/obo/CL_0000062
T13 977-987 Body_part denotes stem cells http://purl.obolibrary.org/obo/CL_0000034
T14 992-1003 Body_part denotes osteoblasts http://purl.obolibrary.org/obo/CL_0000062
T15 1087-1091 Body_part denotes MSCs http://purl.obolibrary.org/obo/CL_0000134
T16 1228-1250 Body_part denotes Mesenchymal stem cells http://purl.obolibrary.org/obo/CL_0000134
T17 1367-1378 Body_part denotes osteoblasts http://purl.obolibrary.org/obo/CL_0000062

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 13-24 Body_part denotes bone marrow http://purl.obolibrary.org/obo/MAT_0000084
T2 45-55 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185
T3 136-146 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185
T4 398-407 Body_part denotes stem cell http://purl.obolibrary.org/obo/MAT_0000185
T5 810-820 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185
T6 977-987 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185
T7 1240-1250 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-117 Sentence denotes Glycomics of bone marrow-derived mesenchymal stem cells can be used to evaluate their cellular differentiation stage.
TextSentencer_T2 118-193 Sentence denotes Human mesenchymal stem cells (MSCs) are adult multipotent progenitor cells.
TextSentencer_T3 194-347 Sentence denotes They hold an enormous therapeutic potential, but at the moment there is little information on the properties of MSCs, including their surface structures.
TextSentencer_T4 348-500 Sentence denotes In the present study, we analyzed the mesenchymal stem cell glycome by using mass spectrometric profiling as well as a panel of glycan binding proteins.
TextSentencer_T5 501-645 Sentence denotes Structural verifications were obtained by nuclear magnetic resonance spectroscopy, mass spectrometric fragmentation, and glycosidase digestions.
TextSentencer_T6 646-743 Sentence denotes The MSC glycome was compared to the glycome of corresponding osteogenically differentiated cells.
TextSentencer_T7 744-862 Sentence denotes More than one hundred glycan signals were detected in mesenchymal stem cells and osteoblasts differentiated from them.
TextSentencer_T8 863-1047 Sentence denotes The glycan profiles of MSCs and osteoblasts were consistently different in biological replicates, indicating that stem cells and osteoblasts have characteristic glycosylation features.
TextSentencer_T9 1048-1227 Sentence denotes Glycosylation features associated with MSCs rather than differentiated cells included high-mannose type N-glycans, linear poly-N-acetyllactosamine chains and alpha2-3-sialylation.
TextSentencer_T10 1228-1296 Sentence denotes Mesenchymal stem cells expressed SSEA-4 and sialyl Lewis x epitopes.
TextSentencer_T11 1297-1425 Sentence denotes Characteristic glycosylation features that appeared in differentiated osteoblasts included abundant sulfate ester modifications.
TextSentencer_T12 1426-1521 Sentence denotes The results show that glycosylation analysis can be used to evaluate MSC differentiation state.
T1 0-117 Sentence denotes Glycomics of bone marrow-derived mesenchymal stem cells can be used to evaluate their cellular differentiation stage.
T2 118-193 Sentence denotes Human mesenchymal stem cells (MSCs) are adult multipotent progenitor cells.
T3 194-347 Sentence denotes They hold an enormous therapeutic potential, but at the moment there is little information on the properties of MSCs, including their surface structures.
T4 348-500 Sentence denotes In the present study, we analyzed the mesenchymal stem cell glycome by using mass spectrometric profiling as well as a panel of glycan binding proteins.
T5 501-645 Sentence denotes Structural verifications were obtained by nuclear magnetic resonance spectroscopy, mass spectrometric fragmentation, and glycosidase digestions.
T6 646-743 Sentence denotes The MSC glycome was compared to the glycome of corresponding osteogenically differentiated cells.
T7 744-862 Sentence denotes More than one hundred glycan signals were detected in mesenchymal stem cells and osteoblasts differentiated from them.
T8 863-1047 Sentence denotes The glycan profiles of MSCs and osteoblasts were consistently different in biological replicates, indicating that stem cells and osteoblasts have characteristic glycosylation features.
T9 1048-1227 Sentence denotes Glycosylation features associated with MSCs rather than differentiated cells included high-mannose type N-glycans, linear poly-N-acetyllactosamine chains and alpha2-3-sialylation.
T10 1228-1296 Sentence denotes Mesenchymal stem cells expressed SSEA-4 and sialyl Lewis x epitopes.
T11 1297-1425 Sentence denotes Characteristic glycosylation features that appeared in differentiated osteoblasts included abundant sulfate ester modifications.
T12 1426-1521 Sentence denotes The results show that glycosylation analysis can be used to evaluate MSC differentiation state.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-117 Sentence denotes Glycomics of bone marrow-derived mesenchymal stem cells can be used to evaluate their cellular differentiation stage.
T2 118-193 Sentence denotes Human mesenchymal stem cells (MSCs) are adult multipotent progenitor cells.
T3 194-347 Sentence denotes They hold an enormous therapeutic potential, but at the moment there is little information on the properties of MSCs, including their surface structures.
T4 348-500 Sentence denotes In the present study, we analyzed the mesenchymal stem cell glycome by using mass spectrometric profiling as well as a panel of glycan binding proteins.
T5 501-645 Sentence denotes Structural verifications were obtained by nuclear magnetic resonance spectroscopy, mass spectrometric fragmentation, and glycosidase digestions.
T6 646-743 Sentence denotes The MSC glycome was compared to the glycome of corresponding osteogenically differentiated cells.
T7 744-862 Sentence denotes More than one hundred glycan signals were detected in mesenchymal stem cells and osteoblasts differentiated from them.
T8 863-1047 Sentence denotes The glycan profiles of MSCs and osteoblasts were consistently different in biological replicates, indicating that stem cells and osteoblasts have characteristic glycosylation features.
T9 1048-1227 Sentence denotes Glycosylation features associated with MSCs rather than differentiated cells included high-mannose type N-glycans, linear poly-N-acetyllactosamine chains and alpha2-3-sialylation.
T10 1228-1296 Sentence denotes Mesenchymal stem cells expressed SSEA-4 and sialyl Lewis x epitopes.
T11 1297-1425 Sentence denotes Characteristic glycosylation features that appeared in differentiated osteoblasts included abundant sulfate ester modifications.
T12 1426-1521 Sentence denotes The results show that glycosylation analysis can be used to evaluate MSC differentiation state.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 1261-1267 Glycan denotes SSEA-4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G84263XI
T2 1272-1286 Glycan denotes sialyl Lewis x https://api.glycosmos.org/wurcs2image/latest/png/binary/G00054MO

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 1261-1267 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes SSEA-4 http://www.glycoepitope.jp/epitopes/EP0044
T2 1272-1286 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes sialyl Lewis x http://www.glycoepitope.jp/epitopes/EP0012

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 118-123 OrganismTaxon denotes Human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 13-24 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T2 33-55 Body_part denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL_0000134
T3 124-146 Body_part denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL_0000134
T4 148-152 Body_part denotes MSCs http://purl.obolibrary.org/obo/CL_0000134
T5 176-192 Body_part denotes progenitor cells http://purl.obolibrary.org/obo/CL_0011026
T6 306-310 Body_part denotes MSCs http://purl.obolibrary.org/obo/CL_0000134
T7 328-346 Body_part denotes surface structures http://purl.obolibrary.org/obo/UBERON_0003102
T8 386-407 Body_part denotes mesenchymal stem cell http://purl.obolibrary.org/obo/CL_0000134
T9 798-820 Body_part denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL_0000134
T10 825-836 Body_part denotes osteoblasts http://purl.obolibrary.org/obo/CL_0000062
T11 886-890 Body_part denotes MSCs http://purl.obolibrary.org/obo/CL_0000134
T12 895-906 Body_part denotes osteoblasts http://purl.obolibrary.org/obo/CL_0000062
T13 977-987 Body_part denotes stem cells http://purl.obolibrary.org/obo/CL_0000034
T14 992-1003 Body_part denotes osteoblasts http://purl.obolibrary.org/obo/CL_0000062
T15 1087-1091 Body_part denotes MSCs http://purl.obolibrary.org/obo/CL_0000134
T16 1228-1250 Body_part denotes Mesenchymal stem cells http://purl.obolibrary.org/obo/CL_0000134
T17 1367-1378 Body_part denotes osteoblasts http://purl.obolibrary.org/obo/CL_0000062

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 13-24 Body_part denotes bone marrow http://purl.obolibrary.org/obo/MAT_0000084
T2 45-55 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185
T3 136-146 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185
T4 398-407 Body_part denotes stem cell http://purl.obolibrary.org/obo/MAT_0000185
T5 810-820 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185
T6 977-987 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185
T7 1240-1250 Body_part denotes stem cells http://purl.obolibrary.org/obo/MAT_0000185

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 33-55 Cell denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL:0000134
T2 124-146 Cell denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL:0000134
T3 148-152 Cell denotes MSCs http://purl.obolibrary.org/obo/CL:0000134
T4 176-192 Cell denotes progenitor cells http://purl.obolibrary.org/obo/CL:0011026
T5 306-310 Cell denotes MSCs http://purl.obolibrary.org/obo/CL:0000134
T6 386-407 Cell denotes mesenchymal stem cell http://purl.obolibrary.org/obo/CL:0000134
T7 398-407 Cell denotes stem cell http://purl.obolibrary.org/obo/CL:0000034
T8 798-820 Cell denotes mesenchymal stem cells http://purl.obolibrary.org/obo/CL:0000134
T9 825-836 Cell denotes osteoblasts http://purl.obolibrary.org/obo/CL:0000062
T10 886-890 Cell denotes MSCs http://purl.obolibrary.org/obo/CL:0000134
T11 895-906 Cell denotes osteoblasts http://purl.obolibrary.org/obo/CL:0000062
T12 977-987 Cell denotes stem cells http://purl.obolibrary.org/obo/CL:0000034
T13 992-1003 Cell denotes osteoblasts http://purl.obolibrary.org/obo/CL:0000062
T14 1087-1091 Cell denotes MSCs http://purl.obolibrary.org/obo/CL:0000134
T15 1170-1174 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T17 1228-1250 Cell denotes Mesenchymal stem cells http://purl.obolibrary.org/obo/CL:0000134
T18 1367-1378 Cell denotes osteoblasts http://purl.obolibrary.org/obo/CL:0000062