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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-42 Sentence denotes Malaria surveillance--United States, 2006.
TextSentencer_T2 43-61 Sentence denotes PROBLEM/CONDITION:
TextSentencer_T3 62-203 Sentence denotes Malaria in humans is caused by intraerythrocytic protozoa of the genus Plasmodium (i.e., P. falciparum, P. vivax, P. ovale, and P. malariae).
TextSentencer_T4 204-298 Sentence denotes These parasites are transmitted by the bite of an infective female Anopheles species mosquito.
TextSentencer_T5 299-436 Sentence denotes The majority of malaria infections in the United States occur among persons who have traveled to areas with ongoing malaria transmission.
TextSentencer_T6 437-581 Sentence denotes In the United States, cases can occur through exposure to infected blood products, congenital transmission, or local mosquitoborne transmission.
TextSentencer_T7 582-713 Sentence denotes Malaria surveillance is conducted to identify episodes of local transmission and to guide prevention recommendations for travelers.
TextSentencer_T8 714-729 Sentence denotes PERIOD COVERED:
TextSentencer_T9 730-844 Sentence denotes This report summarizes cases in persons with onset of illness in 2006 and summarizes trends during previous years.
TextSentencer_T10 845-867 Sentence denotes DESCRIPTION OF SYSTEM:
TextSentencer_T11 868-1060 Sentence denotes Malaria cases confirmed by blood film or polymerase chain reaction (PCR) are mandated to be reported to local and state health departments by health-care providers or laboratory staff members.
TextSentencer_T12 1061-1313 Sentence denotes Case investigations are conducted by local and state health departments, and reports are transmitted to CDC through the National Malaria Surveillance System (NMSS), National Notifiable Diseases Surveillance System (NNDSS), and direct CDC consultations.
TextSentencer_T13 1314-1383 Sentence denotes Data from these reporting systems serve as the basis for this report.
TextSentencer_T14 1384-1531 Sentence denotes RESULTS: CDC received reports of 1,564 cases of malaria among persons in the United States with onset of symptoms in 2006, six of which were fatal.
TextSentencer_T15 1532-1599 Sentence denotes This is an increase of 2.4% from the 1,528 cases reported for 2005.
TextSentencer_T16 1600-1722 Sentence denotes P. falciparum, P. vivax, P. malariae, and P. ovale were identified in 39.2%, 17.6%, 2.9%, and 3.0% of cases, respectively.
TextSentencer_T17 1723-1780 Sentence denotes Ten patients (0.6%) were infected by two or more species.
TextSentencer_T18 1781-1852 Sentence denotes The infecting species was unreported or undetermined in 36.6% of cases.
TextSentencer_T19 1853-1927 Sentence denotes Compared with 2005, the largest increases in cases were from Asia (16.0%).
TextSentencer_T20 1928-2082 Sentence denotes Based on estimated volume of travel, the highest estimated relative case rates of malaria among travelers occurred among those returning from West Africa.
TextSentencer_T21 2083-2326 Sentence denotes Of 602 U.S. civilians who acquired malaria abroad and for whom chemoprophylaxis information was known, 405 (67.3%) reported that they had not followed a chemoprophylactic drug regimen recommended by CDC for the area to which they had traveled.
TextSentencer_T22 2327-2441 Sentence denotes Seventeen cases were reported in pregnant women, among whom only one reported taking chemoprophylaxis precautions.
TextSentencer_T23 2442-2546 Sentence denotes Six deaths were reported; five of the persons were infected with P. falciparum and one with P. malariae.
TextSentencer_T24 2547-2562 Sentence denotes INTERPRETATION:
TextSentencer_T25 2563-2691 Sentence denotes Despite the 2.4% increase in cases from 2005 to 2006, the numbers of malaria cases remained relatively stable during 2001--2006.
TextSentencer_T26 2692-2779 Sentence denotes No change was detected in the proportion of cases by species responsible for infection.
TextSentencer_T27 2780-2866 Sentence denotes U.S. civilians traveling to West Africa had the highest estimated relative case rates.
TextSentencer_T28 2867-3061 Sentence denotes In the majority of reported cases, U.S. civilians who acquired infection abroad had not adhered to a chemoprophylaxis regimen that was appropriate for the country in which they acquired malaria.
TextSentencer_T29 3062-3084 Sentence denotes PUBLIC HEALTH ACTIONS:
TextSentencer_T30 3085-3184 Sentence denotes Additional investigations were conducted of the six fatal cases that occurred in the United States.
TextSentencer_T31 3185-3384 Sentence denotes Persons traveling to a malarious area should take one of the recommended chemoprophylaxis regimens appropriate for the region of travel and use personal protection measures to prevent mosquito bites.
TextSentencer_T32 3385-3682 Sentence denotes Any person who has been to a malarious area and who subsequently has a fever or influenza-like symptoms should seek medical care immediately and report their travel history to the clinician; investigation should always include blood-film tests for malaria, with results made available immediately.
TextSentencer_T33 3683-3753 Sentence denotes Malaria infections can be fatal if not diagnosed and treated promptly.
TextSentencer_T34 3754-3938 Sentence denotes CDC recommendations concerning malaria prevention are available at http://wwwn. cdc.gov/travel/contentdiseases.aspx#malaria or by calling the CDC Malaria Branch on weekdays (telephone:
TextSentencer_T35 3939-3989 Sentence denotes 770-488-7788; Monday--Friday, 8:00 A.M.--4:30 P.M.
TextSentencer_T36 3990-4100 Sentence denotes EST); during evenings, weekends, and holidays, call the CDC Director's Emergency Operations Center (telephone:
TextSentencer_T37 4101-4174 Sentence denotes 770-488-7100), and ask to page the person on call for the Malaria Branch.
TextSentencer_T38 4175-4336 Sentence denotes Recommendations concerning malaria treatment are available at http://www.cdc.gov/malaria/diagnosis_treatment/treatment.htm or by calling the CDC Malaria Hotline.
T1 0-42 Sentence denotes Malaria surveillance--United States, 2006.
T2 43-61 Sentence denotes PROBLEM/CONDITION:
T3 62-203 Sentence denotes Malaria in humans is caused by intraerythrocytic protozoa of the genus Plasmodium (i.e., P. falciparum, P. vivax, P. ovale, and P. malariae).
T4 204-298 Sentence denotes These parasites are transmitted by the bite of an infective female Anopheles species mosquito.
T5 299-436 Sentence denotes The majority of malaria infections in the United States occur among persons who have traveled to areas with ongoing malaria transmission.
T6 437-581 Sentence denotes In the United States, cases can occur through exposure to infected blood products, congenital transmission, or local mosquitoborne transmission.
T7 582-713 Sentence denotes Malaria surveillance is conducted to identify episodes of local transmission and to guide prevention recommendations for travelers.
T8 714-729 Sentence denotes PERIOD COVERED:
T9 730-844 Sentence denotes This report summarizes cases in persons with onset of illness in 2006 and summarizes trends during previous years.
T10 845-867 Sentence denotes DESCRIPTION OF SYSTEM:
T11 868-1060 Sentence denotes Malaria cases confirmed by blood film or polymerase chain reaction (PCR) are mandated to be reported to local and state health departments by health-care providers or laboratory staff members.
T12 1061-1313 Sentence denotes Case investigations are conducted by local and state health departments, and reports are transmitted to CDC through the National Malaria Surveillance System (NMSS), National Notifiable Diseases Surveillance System (NNDSS), and direct CDC consultations.
T13 1314-1383 Sentence denotes Data from these reporting systems serve as the basis for this report.
T14 1384-1531 Sentence denotes RESULTS: CDC received reports of 1,564 cases of malaria among persons in the United States with onset of symptoms in 2006, six of which were fatal.
T15 1532-1599 Sentence denotes This is an increase of 2.4% from the 1,528 cases reported for 2005.
T16 1600-1722 Sentence denotes P. falciparum, P. vivax, P. malariae, and P. ovale were identified in 39.2%, 17.6%, 2.9%, and 3.0% of cases, respectively.
T17 1723-1780 Sentence denotes Ten patients (0.6%) were infected by two or more species.
T18 1781-1852 Sentence denotes The infecting species was unreported or undetermined in 36.6% of cases.
T19 1853-1927 Sentence denotes Compared with 2005, the largest increases in cases were from Asia (16.0%).
T20 1928-2082 Sentence denotes Based on estimated volume of travel, the highest estimated relative case rates of malaria among travelers occurred among those returning from West Africa.
T21 2083-2326 Sentence denotes Of 602 U.S. civilians who acquired malaria abroad and for whom chemoprophylaxis information was known, 405 (67.3%) reported that they had not followed a chemoprophylactic drug regimen recommended by CDC for the area to which they had traveled.
T22 2327-2441 Sentence denotes Seventeen cases were reported in pregnant women, among whom only one reported taking chemoprophylaxis precautions.
T23 2442-2546 Sentence denotes Six deaths were reported; five of the persons were infected with P. falciparum and one with P. malariae.
T24 2547-2562 Sentence denotes INTERPRETATION:
T25 2563-2691 Sentence denotes Despite the 2.4% increase in cases from 2005 to 2006, the numbers of malaria cases remained relatively stable during 2001--2006.
T26 2692-2779 Sentence denotes No change was detected in the proportion of cases by species responsible for infection.
T27 2780-2866 Sentence denotes U.S. civilians traveling to West Africa had the highest estimated relative case rates.
T28 2867-3061 Sentence denotes In the majority of reported cases, U.S. civilians who acquired infection abroad had not adhered to a chemoprophylaxis regimen that was appropriate for the country in which they acquired malaria.
T29 3062-3084 Sentence denotes PUBLIC HEALTH ACTIONS:
T30 3085-3184 Sentence denotes Additional investigations were conducted of the six fatal cases that occurred in the United States.
T31 3185-3384 Sentence denotes Persons traveling to a malarious area should take one of the recommended chemoprophylaxis regimens appropriate for the region of travel and use personal protection measures to prevent mosquito bites.
T32 3385-3682 Sentence denotes Any person who has been to a malarious area and who subsequently has a fever or influenza-like symptoms should seek medical care immediately and report their travel history to the clinician; investigation should always include blood-film tests for malaria, with results made available immediately.
T33 3683-3753 Sentence denotes Malaria infections can be fatal if not diagnosed and treated promptly.
T34 3754-3938 Sentence denotes CDC recommendations concerning malaria prevention are available at http://wwwn. cdc.gov/travel/contentdiseases.aspx#malaria or by calling the CDC Malaria Branch on weekdays (telephone:
T35 3939-3989 Sentence denotes 770-488-7788; Monday--Friday, 8:00 A.M.--4:30 P.M.
T36 3990-4100 Sentence denotes EST); during evenings, weekends, and holidays, call the CDC Director's Emergency Operations Center (telephone:
T37 4101-4174 Sentence denotes 770-488-7100), and ask to page the person on call for the Malaria Branch.
T38 4175-4336 Sentence denotes Recommendations concerning malaria treatment are available at http://www.cdc.gov/malaria/diagnosis_treatment/treatment.htm or by calling the CDC Malaria Hotline.

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 3456-3461 HP:0001945 denotes fever

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 504-509 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 895-900 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T3 3612-3617 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

PubCasesORDO

Id Subject Object Predicate Lexical cue
TI1 0-7 ORDO:673 denotes Malaria
AB1 193-201 ORDO:673 denotes malariae
AB2 315-322 ORDO:673 denotes malaria
AB3 415-422 ORDO:673 denotes malaria
AB4 582-589 ORDO:673 denotes Malaria
AB5 865-875 ORDO:673 denotes M: Malaria
AB6 1190-1197 ORDO:673 denotes Malaria
AB7 1432-1439 ORDO:673 denotes malaria
AB8 1628-1636 ORDO:673 denotes malariae
AB9 2010-2017 ORDO:673 denotes malaria
AB10 2118-2125 ORDO:673 denotes malaria
AB11 2537-2545 ORDO:673 denotes malariae
AB12 2632-2639 ORDO:673 denotes malaria
AB13 3053-3060 ORDO:673 denotes malaria
AB14 3633-3640 ORDO:673 denotes malaria
AB15 3683-3690 ORDO:673 denotes Malaria
AB16 3785-3792 ORDO:673 denotes malaria
AB17 3900-3907 ORDO:673 denotes Malaria
AB18 4159-4166 ORDO:673 denotes Malaria
AB19 4202-4209 ORDO:673 denotes malaria
AB20 4256-4263 ORDO:673 denotes malaria
AB21 4320-4327 ORDO:673 denotes Malaria

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 504-509 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 895-900 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T3 3612-3617 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood