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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 262-274 xzyao:1553 denotes Oryza sativa
M_1 201-218 xzyao:21191 denotes Neurospora crassa
M_2 77-97 xzyao:36708 denotes particle bombardment
M_3 617-637 xzyao:36708 denotes particle bombardment
M_4 904-924 xzyao:36708 denotes particle bombardment
M_5 486-494 xzyao:38844 denotes the gene
M_6 0-7 hunflair:NA:Gene denotes OsRecQ1
M_7 686-693 hunflair:NA:Gene denotes OsRecQ1
M_8 855-862 hunflair:NA:Gene denotes OsRecQ1
M_9 1349-1356 hunflair:NA:Gene denotes OsRecQ1
M_10 780-783 hunflair:NA:Gene denotes GUS
M_11 201-218 hunflair:NA:Species denotes Neurospora crassa
M_12 262-274 hunflair:NA:Species denotes Oryza sativa
M_13 11-16 hunflair:NA:Gene denotes QDE-3
M_14 192-197 hunflair:NA:Gene denotes QDE-3
M_15 785-803 hunflair:NA:Gene denotes beta-glucuronidase
M_16 276-288 hunflair:NA:CellLine denotes mutant lines
M_17 538-550 hunflair:NA:CellLine denotes mutant lines
M_18 817-829 hunflair:NA:CellLine denotes mutant lines
M_19 1065-1077 hunflair:NA:CellLine denotes mutant lines
M_20 169-179 hunflair:NA:Chemical denotes nucleotide
M_21 30-34 hunflair:NA:Species denotes rice
M_22 256-260 hunflair:NA:Species denotes rice
M_23 323-327 hunflair:NA:Species denotes rice
M_24 752-778 hunflair:NA:Gene denotes green fluorescence protein
M_25 201-218 pubtator:5141:Species denotes Neurospora crassa
M_26 262-274 pubtator:4530:Species denotes Oryza sativa
M_27 30-34 pubtator:4530:Species denotes rice
M_28 256-260 pubtator:4530:Species denotes rice
M_29 323-327 pubtator:4530:Species denotes rice

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 328-343 http://identifiers.org/oryzabase.gene/2983 denotes retrotransposon
T2 399-400 http://identifiers.org/oryzabase.gene/11216 denotes 1

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 0-7 http://identifiers.org/oryzabase.gene/10296 denotes OsRecQ1
T2 344-349 http://identifiers.org/oryzabase.gene/2982 denotes Tos17
T3 686-693 http://identifiers.org/oryzabase.gene/10296 denotes OsRecQ1
T4 855-862 http://identifiers.org/oryzabase.gene/10296 denotes OsRecQ1
T5 1183-1189 http://identifiers.org/oryzabase.gene/11832 denotes miR171
T6 1349-1356 http://identifiers.org/oryzabase.gene/10296 denotes OsRecQ1
T80521 0-7 http://identifiers.org/rapdb.locus/Os11g0672700 denotes OsRecQ1
T13700 686-693 http://identifiers.org/rapdb.locus/Os11g0672700 denotes OsRecQ1
T7052 855-862 http://identifiers.org/rapdb.locus/Os11g0672700 denotes OsRecQ1
T49695 1349-1356 http://identifiers.org/rapdb.locus/Os11g0672700 denotes OsRecQ1

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 262-274 hunflair:NA:Species denotes Oryza sativa
M_1 0-7 hunflair:NA:Gene denotes OsRecQ1
M_2 686-693 hunflair:NA:Gene denotes OsRecQ1
M_3 855-862 hunflair:NA:Gene denotes OsRecQ1
M_4 1349-1356 hunflair:NA:Gene denotes OsRecQ1
M_5 785-803 hunflair:NA:Gene denotes beta-glucuronidase
M_6 30-34 hunflair:NA:Species denotes rice
M_7 256-260 hunflair:NA:Species denotes rice
M_8 323-327 hunflair:NA:Species denotes rice
M_9 780-783 hunflair:NA:Gene denotes GUS
M_10 201-218 hunflair:NA:Species denotes Neurospora crassa
M_11 276-288 hunflair:NA:CellLine denotes mutant lines
M_12 538-550 hunflair:NA:CellLine denotes mutant lines
M_13 817-829 hunflair:NA:CellLine denotes mutant lines
M_14 1065-1077 hunflair:NA:CellLine denotes mutant lines
M_15 11-16 hunflair:NA:Gene denotes QDE-3
M_16 192-197 hunflair:NA:Gene denotes QDE-3
M_17 169-179 hunflair:NA:Chemical denotes nucleotide
M_18 752-778 hunflair:NA:Gene denotes green fluorescence protein

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 0-7 http://identifiers.org/oryzabase.gene/10296 denotes OsRecQ1
T2 11-34 http://identifiers.org/oryzabase.gene/10296 denotes QDE-3 homologue in rice
T3 328-349 http://identifiers.org/oryzabase.gene/2982 denotes retrotransposon Tos17
T4 686-693 http://identifiers.org/oryzabase.gene/10296 denotes OsRecQ1
T5 855-862 http://identifiers.org/oryzabase.gene/10296 denotes OsRecQ1
T6 1183-1189 http://identifiers.org/oryzabase.gene/11832 denotes miR171
T7 1279-1284 http://identifiers.org/oryzabase.gene/11165 denotes small
T8 1349-1356 http://identifiers.org/oryzabase.gene/10296 denotes OsRecQ1
T72456 0-7 http://identifiers.org/ricegap/LOC_Os11g44910 denotes OsRecQ1
T59804 11-34 http://identifiers.org/ricegap/LOC_Os11g44910 denotes QDE-3 homologue in rice
T80726 686-693 http://identifiers.org/ricegap/LOC_Os11g44910 denotes OsRecQ1
T9020 855-862 http://identifiers.org/ricegap/LOC_Os11g44910 denotes OsRecQ1
T27680 1279-1284 http://identifiers.org/ricegap/LOC_Os02g34850 denotes small
T42310 1349-1356 http://identifiers.org/ricegap/LOC_Os11g44910 denotes OsRecQ1
T12930 0-7 http://identifiers.org/rapdb.locus/Os11g0672700 denotes OsRecQ1
T32866 11-34 http://identifiers.org/rapdb.locus/Os11g0672700 denotes QDE-3 homologue in rice
T401 686-693 http://identifiers.org/rapdb.locus/Os11g0672700 denotes OsRecQ1
T35287 855-862 http://identifiers.org/rapdb.locus/Os11g0672700 denotes OsRecQ1
T79023 1279-1284 http://identifiers.org/rapdb.locus/Os02g0554000 denotes small
T23289 1349-1356 http://identifiers.org/rapdb.locus/Os11g0672700 denotes OsRecQ1
T64803 0-7 http://identifiers.org/uniprot/Q2QZT4 denotes OsRecQ1
T634 11-34 http://identifiers.org/uniprot/Q2QZT4 denotes QDE-3 homologue in rice
T54012 686-693 http://identifiers.org/uniprot/Q2QZT4 denotes OsRecQ1
T79510 855-862 http://identifiers.org/uniprot/Q2QZT4 denotes OsRecQ1
T5953 1349-1356 http://identifiers.org/uniprot/Q2QZT4 denotes OsRecQ1
M_0 262-274 hunflair:NA:Species denotes Oryza sativa
M_1 0-7 hunflair:NA:Gene denotes OsRecQ1
M_2 686-693 hunflair:NA:Gene denotes OsRecQ1
M_3 855-862 hunflair:NA:Gene denotes OsRecQ1
M_4 1349-1356 hunflair:NA:Gene denotes OsRecQ1
M_5 785-803 hunflair:NA:Gene denotes beta-glucuronidase
M_6 30-34 hunflair:NA:Species denotes rice
M_7 256-260 hunflair:NA:Species denotes rice
M_8 323-327 hunflair:NA:Species denotes rice
M_9 780-783 hunflair:NA:Gene denotes GUS
M_10 201-218 hunflair:NA:Species denotes Neurospora crassa
M_11 276-288 hunflair:NA:CellLine denotes mutant lines
M_12 538-550 hunflair:NA:CellLine denotes mutant lines
M_13 817-829 hunflair:NA:CellLine denotes mutant lines
M_14 1065-1077 hunflair:NA:CellLine denotes mutant lines
M_15 11-16 hunflair:NA:Gene denotes QDE-3
M_16 192-197 hunflair:NA:Gene denotes QDE-3
M_17 169-179 hunflair:NA:Chemical denotes nucleotide
M_18 752-778 hunflair:NA:Gene denotes green fluorescence protein

OryzaGP

Id Subject Object Predicate Lexical cue
T1 328-343 gene denotes retrotransposon
T2 686-693 gene denotes OsRecQ1
T3 1349-1356 gene denotes OsRecQ1

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-155 Sentence denotes OsRecQ1, a QDE-3 homologue in rice, is required for RNA silencing induced by particle bombardment for inverted repeat DNA, but not for double-stranded RNA.
T2 156-364 Sentence denotes Based on the nucleotide sequence of QDE-3 in Neurospora crassa, which is involved in RNA silencing, rice (Oryza sativa) mutant lines disrupted by the insertion of the rice retrotransposon Tos17 were selected.
T3 365-467 Sentence denotes Homozygous individuals from the M(1) and M(2) generations were screened and used for further analyses.
T4 468-586 Sentence denotes The expression of the gene was not detected in leaves or calli of the mutant lines, in contrast to the wild type (WT).
T5 587-830 Sentence denotes Induction of RNA silencing by particle bombardment was performed to investigate any effects of the OsRecQ1 gene on RNA silencing with silencing inducers of the GFP (green fluorescence protein)/GUS (beta-glucuronidase) gene in the mutant lines.
T6 831-990 Sentence denotes The results showed that OsRecQ1 is required for RNA silencing induced by particle bombardment for inverted-repeat DNA, but not for double-stranded RNA (dsRNA).
T7 991-1099 Sentence denotes The levels of transcripts from inverted-repeat DNA were much lower in the mutant lines than those in the WT.
T8 1100-1301 Sentence denotes Furthermore, no effects were observed in the accumulation of endogenous microRNAs (miR171 and miR156) and the production of the short interspersed nuclear element retroelement by small interfering RNA.
T9 1302-1482 Sentence denotes On the basis of these results, we propose that OsRecQ1 may participate in the process that allows inverted repeat DNA to be transcribed into dsRNA, which can trigger RNA silencing.