> top > docs > PubMed:18553105 > annotations

PubMed:18553105 JSONTXT

Annnotations TAB JSON ListView MergeView

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 186-197 xzyao:23828 denotes rice plants
M_1 40-50 funRiceGene:228 denotes resistance
M_2 406-416 funRiceGene:228 denotes resistance
M_3 999-1009 funRiceGene:228 denotes resistance
M_4 1130-1140 funRiceGene:228 denotes resistance
M_5 353-362 funRiceGene:269 denotes resistant
M_6 601-610 funRiceGene:269 denotes resistant
M_7 54-71 funRiceGene:243, xzyao:39703 denotes brown planthopper
M_8 151-168 funRiceGene:243, xzyao:39703 denotes brown planthopper
M_9 995-1009 xzyao:28985 denotes BPH resistance
M_10 60-71 TO:0000380 denotes planthopper
M_11 157-168 TO:0000380 denotes planthopper
M_12 406-421 xzyao:525 denotes resistance gene
M_13 363-381 xzyao:42894 denotes near-isogenic line
M_14 85-96 xzyao:28823 denotes lugens Stål
M_15 73-91 xzyao:31725 denotes Nilaparvata lugens
M_16 73-96 xzyao:13612 denotes Nilaparvata lugens Stål
M_17 464-473 hunflair:NA:Gene denotes OsBphi252
M_18 920-929 hunflair:NA:Gene denotes OsBphi252
M_19 1036-1045 hunflair:NA:Gene denotes OsBphi252
M_20 383-386 hunflair:NA:CellLine denotes NIL
M_21 170-173 hunflair:NA:Disease denotes BPH
M_22 349-352 hunflair:NA:Disease denotes BPH
M_23 597-600 hunflair:NA:Disease denotes BPH
M_24 714-717 hunflair:NA:Disease denotes BPH
M_25 815-818 hunflair:NA:Disease denotes BPH
M_26 995-998 hunflair:NA:Disease denotes BPH
M_27 1144-1147 hunflair:NA:Disease denotes BPH
M_28 73-96 hunflair:NA:Species denotes Nilaparvata lugens Stål
M_29 339-345 hunflair:NA:CellLine denotes SNBC61
M_30 555-561 hunflair:NA:CellLine denotes SNBC61
M_31 700-706 hunflair:NA:CellLine denotes SNBC61
M_32 956-968 hunflair:NA:Gene denotes lipoxygenase
M_33 54-71 hunflair:NA:Species denotes brown planthopper
M_34 151-168 hunflair:NA:Species denotes brown planthopper
M_35 25-29 hunflair:NA:Gene denotes Bph1
M_36 401-405 hunflair:NA:Gene denotes Bph1
M_37 1067-1071 hunflair:NA:Gene denotes Bph1
M_38 186-190 hunflair:NA:Species denotes rice
M_39 970-973 hunflair:NA:Gene denotes LOX
M_40 54-71 pubtator:108931:Species denotes brown planthopper
M_41 151-168 pubtator:108931:Species denotes brown planthopper
M_42 73-91 pubtator:108931:Species denotes Nilaparvata lugens
M_43 170-173 pubtator:108931:Species denotes BPH
M_44 349-352 pubtator:108931:Species denotes BPH
M_45 597-600 pubtator:108931:Species denotes BPH
M_46 714-717 pubtator:108931:Species denotes BPH
M_47 815-818 pubtator:108931:Species denotes BPH
M_48 995-998 pubtator:108931:Species denotes BPH
M_49 1144-1147 pubtator:108931:Species denotes BPH
M_50 186-190 pubtator:4530:Species denotes rice
M_51 611-616 pubtator:9606:Species denotes donor

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 406-416 funRiceGene:228 denotes resistance
M_1 1130-1140 funRiceGene:228 denotes resistance
M_2 151-168 funRiceGene:243, xzyao:15674 denotes brown planthopper
M_3 353-362 funRiceGene:269 denotes resistant
M_4 601-610 funRiceGene:269 denotes resistant
M_5 151-168 xzyao:10614 denotes brown planthopper
M_6 157-168 TO:0000380 denotes planthopper
M_7 25-29 hunflair:NA:Gene denotes Bph1
M_8 401-405 hunflair:NA:Gene denotes Bph1
M_9 1067-1071 hunflair:NA:Gene denotes Bph1
M_10 464-473 hunflair:NA:Gene denotes OsBphi252
M_11 920-929 hunflair:NA:Gene denotes OsBphi252
M_12 1036-1045 hunflair:NA:Gene denotes OsBphi252
M_13 186-190 hunflair:NA:Species denotes rice
M_14 339-345 hunflair:NA:CellLine denotes SNBC61
M_15 555-561 hunflair:NA:CellLine denotes SNBC61
M_16 700-706 hunflair:NA:CellLine denotes SNBC61
M_17 970-973 hunflair:NA:Gene denotes LOX
M_18 170-173 hunflair:NA:Disease denotes BPH
M_19 349-352 hunflair:NA:Disease denotes BPH
M_20 597-600 hunflair:NA:Disease denotes BPH
M_21 714-717 hunflair:NA:Disease denotes BPH
M_22 815-818 hunflair:NA:Disease denotes BPH
M_23 995-998 hunflair:NA:Disease denotes BPH
M_24 1144-1147 hunflair:NA:Disease denotes BPH
M_25 383-386 hunflair:NA:CellLine denotes NIL
M_26 73-96 hunflair:NA:Species denotes Nilaparvata lugens Stål
M_27 956-968 hunflair:NA:Gene denotes lipoxygenase
M_28 54-71 hunflair:NA:Species denotes brown planthopper
M_29 151-168 hunflair:NA:Species denotes brown planthopper
M_30 54-71 pubtator:108931:Species denotes brown planthopper
M_31 151-168 pubtator:108931:Species denotes brown planthopper
M_32 73-91 pubtator:108931:Species denotes Nilaparvata lugens
M_33 186-190 pubtator:4530:Species denotes rice
M_34 170-173 pubtator:108931:Species denotes BPH
M_35 349-352 pubtator:108931:Species denotes BPH
M_36 597-600 pubtator:108931:Species denotes BPH
M_37 714-717 pubtator:108931:Species denotes BPH
M_38 815-818 pubtator:108931:Species denotes BPH
M_39 995-998 pubtator:108931:Species denotes BPH
M_40 1144-1147 pubtator:108931:Species denotes BPH
M_41 611-616 pubtator:9606:Species denotes donor

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 25-29 http://identifiers.org/oryzabase.gene/939 denotes Bph1
T2 170-173 http://identifiers.org/oryzabase.gene/843 denotes BPH
T3 349-352 http://identifiers.org/oryzabase.gene/843 denotes BPH
T4 401-405 http://identifiers.org/oryzabase.gene/939 denotes Bph1
T5 453-462 http://identifiers.org/oryzabase.gene/14699 denotes OsBphi237
T6 478-487 http://identifiers.org/oryzabase.gene/14700 denotes OsBphi262
T7 478-487 http://identifiers.org/oryzabase.gene/10394 denotes OsBphi262
T8 493-496 http://identifiers.org/oryzabase.gene/2454 denotes gel
T9 597-600 http://identifiers.org/oryzabase.gene/843 denotes BPH
T10 714-717 http://identifiers.org/oryzabase.gene/843 denotes BPH
T11 815-818 http://identifiers.org/oryzabase.gene/843 denotes BPH
T12 995-998 http://identifiers.org/oryzabase.gene/843 denotes BPH
T13 1067-1071 http://identifiers.org/oryzabase.gene/939 denotes Bph1
T14 1121-1124 http://identifiers.org/oryzabase.gene/7170 denotes MAS
T15 1144-1147 http://identifiers.org/oryzabase.gene/843 denotes BPH
T81896 478-487 http://identifiers.org/rapdb.locus/Os12g0559200 denotes OsBphi262
T64816 478-487 http://identifiers.org/rapdb.locus/Os05g0402900 denotes OsBphi262
T67426 1121-1124 http://identifiers.org/rapdb.locus/Os04g0179200 denotes MAS

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 339-345 hunflair:NA:CellLine denotes SNBC61
M_1 555-561 hunflair:NA:CellLine denotes SNBC61
M_2 700-706 hunflair:NA:CellLine denotes SNBC61
M_3 464-473 hunflair:NA:Gene denotes OsBphi252
M_4 920-929 hunflair:NA:Gene denotes OsBphi252
M_5 1036-1045 hunflair:NA:Gene denotes OsBphi252
M_6 186-190 hunflair:NA:Species denotes rice
M_7 956-968 hunflair:NA:Gene denotes lipoxygenase
M_8 25-29 hunflair:NA:Gene denotes Bph1
M_9 401-405 hunflair:NA:Gene denotes Bph1
M_10 1067-1071 hunflair:NA:Gene denotes Bph1
M_11 170-173 hunflair:NA:Disease denotes BPH
M_12 349-352 hunflair:NA:Disease denotes BPH
M_13 597-600 hunflair:NA:Disease denotes BPH
M_14 714-717 hunflair:NA:Disease denotes BPH
M_15 815-818 hunflair:NA:Disease denotes BPH
M_16 995-998 hunflair:NA:Disease denotes BPH
M_17 1144-1147 hunflair:NA:Disease denotes BPH
M_18 73-96 hunflair:NA:Species denotes Nilaparvata lugens Stål
M_19 383-386 hunflair:NA:CellLine denotes NIL
M_20 54-71 hunflair:NA:Species denotes brown planthopper
M_21 151-168 hunflair:NA:Species denotes brown planthopper
M_22 970-973 hunflair:NA:Gene denotes LOX

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 25-29 http://identifiers.org/oryzabase.gene/939 denotes Bph1
T2 170-173 http://identifiers.org/oryzabase.gene/843 denotes BPH
T3 349-352 http://identifiers.org/oryzabase.gene/843 denotes BPH
T4 401-405 http://identifiers.org/oryzabase.gene/939 denotes Bph1
T5 453-462 http://identifiers.org/oryzabase.gene/14699 denotes OsBphi237
T6 478-487 http://identifiers.org/oryzabase.gene/14700 denotes OsBphi262
T7 478-487 http://identifiers.org/oryzabase.gene/10394 denotes OsBphi262
T8 493-496 http://identifiers.org/oryzabase.gene/2454 denotes gel
T9 597-600 http://identifiers.org/oryzabase.gene/843 denotes BPH
T10 714-717 http://identifiers.org/oryzabase.gene/843 denotes BPH
T11 815-818 http://identifiers.org/oryzabase.gene/843 denotes BPH
T12 995-998 http://identifiers.org/oryzabase.gene/843 denotes BPH
T13 1067-1071 http://identifiers.org/oryzabase.gene/939 denotes Bph1
T14 1121-1124 http://identifiers.org/oryzabase.gene/7170 denotes MAS
T15 1144-1147 http://identifiers.org/oryzabase.gene/843 denotes BPH
T43904 478-487 http://identifiers.org/ricegap/LOC_Os12g37260 denotes OsBphi262
T86643 478-487 http://identifiers.org/ricegap/LOC_Os05g33400 denotes OsBphi262
T6304 1121-1124 http://identifiers.org/ricegap/LOC_Os04g10010 denotes MAS
T66976 478-487 http://identifiers.org/rapdb.locus/Os12g0559200 denotes OsBphi262
T21444 478-487 http://identifiers.org/rapdb.locus/Os05g0402900 denotes OsBphi262
T94884 1121-1124 http://identifiers.org/rapdb.locus/Os04g0179200 denotes MAS
T74735 478-487 http://identifiers.org/uniprot/Q9FSE5 denotes OsBphi262
T25185 478-487 http://identifiers.org/uniprot/B9VUU9 denotes OsBphi262
T94308 1121-1124 http://identifiers.org/uniprot/Q01M90 denotes MAS
M_0 339-345 hunflair:NA:CellLine denotes SNBC61
M_1 555-561 hunflair:NA:CellLine denotes SNBC61
M_2 700-706 hunflair:NA:CellLine denotes SNBC61
M_3 464-473 hunflair:NA:Gene denotes OsBphi252
M_4 920-929 hunflair:NA:Gene denotes OsBphi252
M_5 1036-1045 hunflair:NA:Gene denotes OsBphi252
M_6 186-190 hunflair:NA:Species denotes rice
M_7 956-968 hunflair:NA:Gene denotes lipoxygenase
M_8 25-29 hunflair:NA:Gene denotes Bph1
M_9 401-405 hunflair:NA:Gene denotes Bph1
M_10 1067-1071 hunflair:NA:Gene denotes Bph1
M_11 170-173 hunflair:NA:Disease denotes BPH
M_12 349-352 hunflair:NA:Disease denotes BPH
M_13 597-600 hunflair:NA:Disease denotes BPH
M_14 714-717 hunflair:NA:Disease denotes BPH
M_15 815-818 hunflair:NA:Disease denotes BPH
M_16 995-998 hunflair:NA:Disease denotes BPH
M_17 1144-1147 hunflair:NA:Disease denotes BPH
M_18 73-96 hunflair:NA:Species denotes Nilaparvata lugens Stål
M_19 383-386 hunflair:NA:CellLine denotes NIL
M_20 54-71 hunflair:NA:Species denotes brown planthopper
M_21 151-168 hunflair:NA:Species denotes brown planthopper
M_22 970-973 hunflair:NA:Gene denotes LOX

OryzaGP

Id Subject Object Predicate Lexical cue
T1 453-462 gene denotes OsBphi237
T2 464-473 gene denotes OsBphi252
T3 478-487 gene denotes OsBphi262
T4 920-929 gene denotes OsBphi252
T5 970-973 gene denotes LOX
T6 1036-1045 gene denotes OsBphi252

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-143 Sentence denotes Molecular tagging of the Bph1 locus for resistance to brown planthopper (Nilaparvata lugens Stål) through representational difference analysis.
T2 144-422 Sentence denotes During brown planthopper (BPH) feeding on rice plants, we employed a modified representational difference analysis (RDA) method to detect rare transcripts among those differentially expressed in SNBC61, a BPH resistant near-isogenic line (NIL) carrying the Bph1 resistance gene.
T3 423-452 Sentence denotes This identified 3 RDA clones:
T4 453-488 Sentence denotes OsBphi237, OsBphi252 and OsBphi262.
T5 489-726 Sentence denotes DNA gel-blot analysis revealed that the loci of the RDA clones in SNBC61 corresponded to the alleles of the BPH resistant donor Samgangbyeo. Expression analysis indicated that the RDA genes were up-regulated in SNBC61 during BPH feeding.
T6 727-1010 Sentence denotes Interestingly, analysis of 64 SNBC NILs, derived from backcrosses of Samgangbyeo with a BPH susceptible Nagdongbyeo, using a cleaved amplified polymorphic sequence (CAPS) marker indicated that OsBphi252, which encodes a putative lipoxygenase (LOX), co-segregates with BPH resistance.
T7 1011-1148 Sentence denotes Our results suggest that OsBphi252 is tightly linked to Bph1, and may be useful in marker-assisted selection (MAS) for resistance to BPH.