PubMed:18547394
Annnotations
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1101-1103 | funRiceGene:50 | denotes | Fe |
| M_1 | 499-511 | xzyao:1553 | denotes | Oryza sativa |
| M_2 | 1247-1268 | xzyao:13614 | denotes | endoplasmic reticulum |
| M_3 | 1326-1345 | xzyao:15115 | denotes | ceramide metabolism |
| M_4 | 224-235 | xzyao:38499 | denotes | plant cells |
| M_5 | 160-186 | hunflair:NA:Chemical | denotes | long-chain sphingoid bases |
| M_6 | 1152-1165 | hunflair:NA:Chemical | denotes | phytoceramide |
| M_7 | 53-63 | hunflair:NA:Gene | denotes | ceramidase |
| M_8 | 477-487 | hunflair:NA:Gene | denotes | ceramidase |
| M_9 | 584-594 | hunflair:NA:Gene | denotes | ceramidase |
| M_10 | 693-703 | hunflair:NA:Gene | denotes | ceramidase |
| M_11 | 829-834 | hunflair:NA:Gene | denotes | YDC1p |
| M_12 | 819-824 | hunflair:NA:Gene | denotes | YPC1p |
| M_13 | 637-648 | hunflair:NA:Gene | denotes | ceramidases |
| M_14 | 807-818 | hunflair:NA:Gene | denotes | ceramidases |
| M_15 | 269-276 | hunflair:NA:Species | denotes | animals |
| M_16 | 281-286 | hunflair:NA:Species | denotes | yeast |
| M_17 | 738-743 | hunflair:NA:Species | denotes | yeast |
| M_18 | 801-806 | hunflair:NA:Species | denotes | yeast |
| M_19 | 91-104 | hunflair:NA:Chemical | denotes | Sphingolipids |
| M_20 | 767-785 | hunflair:NA:Gene | denotes | Deltaypc1Deltaydc1 |
| M_21 | 1132-1140 | hunflair:NA:Chemical | denotes | ceramide |
| M_22 | 1326-1334 | hunflair:NA:Chemical | denotes | ceramide |
| M_23 | 619-628 | hunflair:NA:Species | denotes | mammalian |
| M_24 | 224-229 | hunflair:NA:Species | denotes | plant |
| M_25 | 471-476 | hunflair:NA:Species | denotes | plant |
| M_26 | 213-219 | hunflair:NA:Species | denotes | fungal |
| M_27 | 499-511 | hunflair:NA:Species | denotes | Oryza sativa |
| M_28 | 629-648 | hunflair:NA:Gene | denotes | neutral ceramidases |
| M_29 | 329-341 | hunflair:NA:Chemical | denotes | sphingolipid |
| M_30 | 42-49 | hunflair:NA:Gene | denotes | OsCDase |
| M_31 | 596-603 | hunflair:NA:Gene | denotes | OsCDase |
| M_32 | 670-677 | hunflair:NA:Gene | denotes | OsCDase |
| M_33 | 868-875 | hunflair:NA:Gene | denotes | OsCDase |
| M_34 | 984-991 | hunflair:NA:Gene | denotes | OsCDase |
| M_35 | 1109-1116 | hunflair:NA:Gene | denotes | OsCDase |
| M_36 | 1219-1226 | hunflair:NA:Gene | denotes | OsCDase |
| M_37 | 76-80 | hunflair:NA:Species | denotes | rice |
| M_38 | 493-497 | hunflair:NA:Species | denotes | rice |
| M_39 | 579-583 | hunflair:NA:Species | denotes | rice |
| M_40 | 281-286 | pubtator:4932:Species | denotes | yeast |
| M_41 | 738-743 | pubtator:4932:Species | denotes | yeast |
| M_42 | 801-806 | pubtator:4932:Species | denotes | yeast |
| M_43 | 329-341 | pubtator:MESH:D013107:Chemical | denotes | sphingolipid |
| M_44 | 619-628 | pubtator:9606:Species | denotes | mammalian |
| M_45 | 76-80 | pubtator:4530:Species | denotes | rice |
| M_46 | 493-497 | pubtator:4530:Species | denotes | rice |
| M_47 | 579-583 | pubtator:4530:Species | denotes | rice |
| M_48 | 1132-1140 | pubtator:MESH:D002518:Chemical | denotes | ceramide |
| M_49 | 1326-1334 | pubtator:MESH:D002518:Chemical | denotes | ceramide |
| M_50 | 819-824 | pubtator:852481:Gene | denotes | YPC1p |
| M_51 | 91-104 | pubtator:MESH:D013107:Chemical | denotes | Sphingolipids |
| M_52 | 1152-1165 | pubtator::Chemical | denotes | phytoceramide |
| M_53 | 829-834 | pubtator:856018:Gene | denotes | YDC1p |
| M_54 | 499-511 | pubtator:4530:Species | denotes | Oryza sativa |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 53-63 | http://identifiers.org/oryzabase.gene/23857 | denotes | ceramidase |
| T2 | 477-487 | http://identifiers.org/oryzabase.gene/23857 | denotes | ceramidase |
| T3 | 584-594 | http://identifiers.org/oryzabase.gene/23857 | denotes | ceramidase |
| T4 | 693-703 | http://identifiers.org/oryzabase.gene/23857 | denotes | ceramidase |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 42-49 | http://identifiers.org/oryzabase.gene/23857 | denotes | OsCDase |
| T2 | 596-603 | http://identifiers.org/oryzabase.gene/23857 | denotes | OsCDase |
| T3 | 670-677 | http://identifiers.org/oryzabase.gene/23857 | denotes | OsCDase |
| T4 | 868-875 | http://identifiers.org/oryzabase.gene/23857 | denotes | OsCDase |
| T5 | 984-991 | http://identifiers.org/oryzabase.gene/23857 | denotes | OsCDase |
| T6 | 1109-1116 | http://identifiers.org/oryzabase.gene/23857 | denotes | OsCDase |
| T7 | 1219-1226 | http://identifiers.org/oryzabase.gene/23857 | denotes | OsCDase |
| T74430 | 42-49 | http://identifiers.org/rapdb.locus/Os01g0624000 | denotes | OsCDase |
| T89178 | 596-603 | http://identifiers.org/rapdb.locus/Os01g0624000 | denotes | OsCDase |
| T61981 | 670-677 | http://identifiers.org/rapdb.locus/Os01g0624000 | denotes | OsCDase |
| T84546 | 868-875 | http://identifiers.org/rapdb.locus/Os01g0624000 | denotes | OsCDase |
| T33321 | 984-991 | http://identifiers.org/rapdb.locus/Os01g0624000 | denotes | OsCDase |
| T23438 | 1109-1116 | http://identifiers.org/rapdb.locus/Os01g0624000 | denotes | OsCDase |
| T36179 | 1219-1226 | http://identifiers.org/rapdb.locus/Os01g0624000 | denotes | OsCDase |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 499-511 | hunflair:NA:Species | denotes | Oryza sativa |
| M_1 | 637-648 | hunflair:NA:Gene | denotes | ceramidases |
| M_2 | 807-818 | hunflair:NA:Gene | denotes | ceramidases |
| M_3 | 1132-1140 | hunflair:NA:Chemical | denotes | ceramide |
| M_4 | 1326-1334 | hunflair:NA:Chemical | denotes | ceramide |
| M_5 | 91-104 | hunflair:NA:Chemical | denotes | Sphingolipids |
| M_6 | 767-785 | hunflair:NA:Gene | denotes | Deltaypc1Deltaydc1 |
| M_7 | 76-80 | hunflair:NA:Species | denotes | rice |
| M_8 | 493-497 | hunflair:NA:Species | denotes | rice |
| M_9 | 579-583 | hunflair:NA:Species | denotes | rice |
| M_10 | 829-834 | hunflair:NA:Gene | denotes | YDC1p |
| M_11 | 42-49 | hunflair:NA:Gene | denotes | OsCDase |
| M_12 | 596-603 | hunflair:NA:Gene | denotes | OsCDase |
| M_13 | 670-677 | hunflair:NA:Gene | denotes | OsCDase |
| M_14 | 868-875 | hunflair:NA:Gene | denotes | OsCDase |
| M_15 | 984-991 | hunflair:NA:Gene | denotes | OsCDase |
| M_16 | 1109-1116 | hunflair:NA:Gene | denotes | OsCDase |
| M_17 | 1219-1226 | hunflair:NA:Gene | denotes | OsCDase |
| M_18 | 1049-1055 | hunflair:NA:Chemical | denotes | Mn(2+) |
| M_19 | 1101-1107 | hunflair:NA:Chemical | denotes | Fe(2+) |
| M_20 | 1033-1039 | hunflair:NA:Chemical | denotes | Ca(2+) |
| M_21 | 269-276 | hunflair:NA:Species | denotes | animals |
| M_22 | 619-628 | hunflair:NA:Species | denotes | mammalian |
| M_23 | 1060-1066 | hunflair:NA:Chemical | denotes | Zn(2+) |
| M_24 | 53-63 | hunflair:NA:Gene | denotes | ceramidase |
| M_25 | 477-487 | hunflair:NA:Gene | denotes | ceramidase |
| M_26 | 584-594 | hunflair:NA:Gene | denotes | ceramidase |
| M_27 | 693-703 | hunflair:NA:Gene | denotes | ceramidase |
| M_28 | 517-529 | hunflair:NA:Species | denotes | Japonica cv. |
| M_29 | 281-286 | hunflair:NA:Species | denotes | yeast |
| M_30 | 738-743 | hunflair:NA:Species | denotes | yeast |
| M_31 | 801-806 | hunflair:NA:Species | denotes | yeast |
| M_32 | 1041-1047 | hunflair:NA:Chemical | denotes | Mg(2+) |
| M_33 | 629-648 | hunflair:NA:Gene | denotes | neutral ceramidases |
| M_34 | 160-186 | hunflair:NA:Chemical | denotes | long-chain sphingoid bases |
| M_35 | 224-229 | hunflair:NA:Species | denotes | plant |
| M_36 | 471-476 | hunflair:NA:Species | denotes | plant |
| M_37 | 329-341 | hunflair:NA:Chemical | denotes | sphingolipid |
| M_38 | 819-824 | hunflair:NA:Gene | denotes | YPC1p |
| M_39 | 213-219 | hunflair:NA:Species | denotes | fungal |
| M_40 | 1152-1165 | hunflair:NA:Chemical | denotes | phytoceramide |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 512-515 | http://identifiers.org/oryzabase.gene/23514 | denotes | spp |
| T2 | 526-528 | http://identifiers.org/oryzabase.gene/22146 | denotes | cv |
| T73258 | 512-515 | http://identifiers.org/ricegap/LOC_Os06g41990 | denotes | spp |
| T26797 | 526-528 | http://identifiers.org/ricegap/LOC_Os05g49940 | denotes | cv |
| T80292 | 512-515 | http://identifiers.org/rapdb.locus/Os06g0625400 | denotes | spp |
| T20007 | 526-528 | http://identifiers.org/rapdb.locus/Os05g0575000 | denotes | cv |
| M_0 | 499-511 | hunflair:NA:Species | denotes | Oryza sativa |
| M_1 | 637-648 | hunflair:NA:Gene | denotes | ceramidases |
| M_2 | 807-818 | hunflair:NA:Gene | denotes | ceramidases |
| M_3 | 1132-1140 | hunflair:NA:Chemical | denotes | ceramide |
| M_4 | 1326-1334 | hunflair:NA:Chemical | denotes | ceramide |
| M_5 | 91-104 | hunflair:NA:Chemical | denotes | Sphingolipids |
| M_6 | 767-785 | hunflair:NA:Gene | denotes | Deltaypc1Deltaydc1 |
| M_7 | 76-80 | hunflair:NA:Species | denotes | rice |
| M_8 | 493-497 | hunflair:NA:Species | denotes | rice |
| M_9 | 579-583 | hunflair:NA:Species | denotes | rice |
| M_10 | 829-834 | hunflair:NA:Gene | denotes | YDC1p |
| M_11 | 42-49 | hunflair:NA:Gene | denotes | OsCDase |
| M_12 | 596-603 | hunflair:NA:Gene | denotes | OsCDase |
| M_13 | 670-677 | hunflair:NA:Gene | denotes | OsCDase |
| M_14 | 868-875 | hunflair:NA:Gene | denotes | OsCDase |
| M_15 | 984-991 | hunflair:NA:Gene | denotes | OsCDase |
| M_16 | 1109-1116 | hunflair:NA:Gene | denotes | OsCDase |
| M_17 | 1219-1226 | hunflair:NA:Gene | denotes | OsCDase |
| M_18 | 1049-1055 | hunflair:NA:Chemical | denotes | Mn(2+) |
| M_19 | 1101-1107 | hunflair:NA:Chemical | denotes | Fe(2+) |
| M_20 | 1033-1039 | hunflair:NA:Chemical | denotes | Ca(2+) |
| M_21 | 269-276 | hunflair:NA:Species | denotes | animals |
| M_22 | 619-628 | hunflair:NA:Species | denotes | mammalian |
| M_23 | 1060-1066 | hunflair:NA:Chemical | denotes | Zn(2+) |
| M_24 | 53-63 | hunflair:NA:Gene | denotes | ceramidase |
| M_25 | 477-487 | hunflair:NA:Gene | denotes | ceramidase |
| M_26 | 584-594 | hunflair:NA:Gene | denotes | ceramidase |
| M_27 | 693-703 | hunflair:NA:Gene | denotes | ceramidase |
| M_28 | 517-529 | hunflair:NA:Species | denotes | Japonica cv. |
| M_29 | 281-286 | hunflair:NA:Species | denotes | yeast |
| M_30 | 738-743 | hunflair:NA:Species | denotes | yeast |
| M_31 | 801-806 | hunflair:NA:Species | denotes | yeast |
| M_32 | 1041-1047 | hunflair:NA:Chemical | denotes | Mg(2+) |
| M_33 | 629-648 | hunflair:NA:Gene | denotes | neutral ceramidases |
| M_34 | 160-186 | hunflair:NA:Chemical | denotes | long-chain sphingoid bases |
| M_35 | 224-229 | hunflair:NA:Species | denotes | plant |
| M_36 | 471-476 | hunflair:NA:Species | denotes | plant |
| M_37 | 329-341 | hunflair:NA:Chemical | denotes | sphingolipid |
| M_38 | 819-824 | hunflair:NA:Gene | denotes | YPC1p |
| M_39 | 213-219 | hunflair:NA:Species | denotes | fungal |
| M_40 | 1152-1165 | hunflair:NA:Chemical | denotes | phytoceramide |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 42-50 | gene | denotes | OsCDase, |
| T2 | 596-604 | gene | denotes | OsCDase) |
| T3 | 670-677 | gene | denotes | OsCDase |
| T4 | 1109-1116 | gene | denotes | OsCDase |
| T5 | 1219-1226 | gene | denotes | OsCDase |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-81 | Sentence | denotes | Molecular cloning and characterization of OsCDase, a ceramidase enzyme from rice. |
| T2 | 82-90 | Sentence | denotes | SUMMARY: |
| T3 | 91-236 | Sentence | denotes | Sphingolipids are a structurally diverse group of molecules based on long-chain sphingoid bases that are found in animal, fungal and plant cells. |
| T4 | 237-416 | Sentence | denotes | In contrast to the situation in animals and yeast, much less is known about the spectrum of sphingolipid species in plants and the roles they play in mediating cellular processes. |
| T5 | 417-516 | Sentence | denotes | Here, we report the cloning and characterization of a plant ceramidase from rice (Oryza sativa spp. |
| T6 | 517-529 | Sentence | denotes | Japonica cv. |
| T7 | 530-542 | Sentence | denotes | Nipponbare). |
| T8 | 543-649 | Sentence | denotes | Sequence analysis suggests that the rice ceramidase (OsCDase) is similar to mammalian neutral ceramidases. |
| T9 | 650-835 | Sentence | denotes | We demonstrate that OsCDase is a bona fide ceramidase by heterologous expression in the yeast double knockout mutant Deltaypc1Deltaydc1 that lacks the yeast ceramidases YPC1p and YDC1p. |
| T10 | 836-983 | Sentence | denotes | Biochemical characterization of OsCDase showed that it exhibited classical Michaelis-Menten kinetics, with optimum activity between pH 5.7 and 6.0. |
| T11 | 984-1108 | Sentence | denotes | OsCDase activity was enhanced in the presence of Ca(2+), Mg(2+), Mn(2+) and Zn(2+), but inhibited in the presence of Fe(2+). |
| T12 | 1109-1181 | Sentence | denotes | OsCDase appears to use ceramide instead of phytoceramide as a substrate. |
| T13 | 1182-1356 | Sentence | denotes | Subcellular localization showed that OsCDase is localized to the endoplasmic reticulum and Golgi, suggesting that these organelles are sites of ceramide metabolism in plants. |