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PubMed:1851861 JSONTXT

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PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 29-45 DiseaseOrPhenotypicFeature denotes immunodeficiency 0021094
T2 100-102 DiseaseOrPhenotypicFeature denotes GS 0005773
T3 187-189 DiseaseOrPhenotypicFeature denotes GS 0005773
T4 235-238 DiseaseOrPhenotypicFeature denotes can 0012833
T5 258-274 DiseaseOrPhenotypicFeature denotes immunodeficiency 0021094
T6 580-582 DiseaseOrPhenotypicFeature denotes GS 0005773
T7 629-631 DiseaseOrPhenotypicFeature denotes GS 0005773
T8 822-824 DiseaseOrPhenotypicFeature denotes GS 0005773
T9 1256-1258 DiseaseOrPhenotypicFeature denotes GS 0005773
T10 1260-1269 DiseaseOrPhenotypicFeature denotes infection 0005550
T11 1434-1436 DiseaseOrPhenotypicFeature denotes GS 0005773
T12 1438-1447 DiseaseOrPhenotypicFeature denotes infection 0005550

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 23-60 DNA denotes human immunodeficiency virus promoter
T2 115-142 cell_type denotes primary human T lymphocytes
T3 165-205 DNA denotes transactivating HHV-6(GS) gene fragments
T4 252-295 DNA denotes human immunodeficiency virus (HIV) promoter
T5 333-359 cell_type denotes HIV-infected human T cells
T6 400-412 DNA denotes HIV promoter
T7 481-508 cell_type denotes primary human T lymphocytes
T8 611-623 DNA denotes HIV promoter
T9 658-666 DNA denotes promoter
T10 698-705 cell_type denotes T cells
T11 738-750 DNA denotes HIV promoter
T12 768-786 cell_type denotes stimulated T cells
T13 816-843 DNA denotes HHV-6(GS) genomic fragments
T14 863-875 DNA denotes HIV promoter
T15 879-900 cell_line denotes cotransfected T cells
T16 904-921 DNA denotes 21.4-kb DNA clone
T17 923-929 DNA denotes pZVB70
T18 991-1004 DNA denotes DNA fragments
T19 1006-1012 DNA denotes pZVB10
T20 1026-1032 DNA denotes pZVH14
T21 1087-1093 DNA denotes pZVH14
T22 1109-1131 DNA denotes HIV promoter construct
T23 1161-1176 DNA denotes NF kappa B site
T24 1192-1219 DNA denotes mutated NF kappa B promoter
T25 1299-1305 DNA denotes pZVB70
T26 1309-1315 DNA denotes pZVB10
T27 1346-1362 DNA denotes NF kappa B sites
T28 1370-1382 DNA denotes HIV promoter
T29 1463-1475 DNA denotes HIV promoter
T30 1488-1509 cell_type denotes primary T lymphocytes
T31 1611-1635 cell_type denotes coinfected human T cells

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
1851861-8#22#32#gene4790 1200-1210 gene4790 denotes NF kappa B
1851861-8#78#80#diseaseC0017097 1256-1258 diseaseC0017097 denotes GS
22#32#gene479078#80#diseaseC0017097 1851861-8#22#32#gene4790 1851861-8#78#80#diseaseC0017097 associated_with NF kappa B,GS

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-206 Sentence denotes Transactivation of the human immunodeficiency virus promoter by human herpesvirus 6 (HHV-6) strains GS and Z-29 in primary human T lymphocytes and identification of transactivating HHV-6(GS) gene fragments.
S2 207-360 Sentence denotes Human herpesvirus 6 (HHV-6) can activate the human immunodeficiency virus (HIV) promoter and accelerate cytopathic effects in HIV-infected human T cells.
S3 361-547 Sentence denotes This study examines the regions of the HIV promoter required for HHV-6 transactivation in a heterogeneous population of primary human T lymphocytes with or without antigenic stimulation.
S4 548-624 Sentence denotes Two different strains of HHV-6, GS and Z29, transactivated the HIV promoter.
S5 625-787 Sentence denotes The GS strain transactivated the promoter in both stimulated and resting T cells, while the Z29 strain increased HIV promoter activity only in stimulated T cells.
S6 788-901 Sentence denotes Three DNA clones containing HHV-6(GS) genomic fragments transactivated the HIV promoter in cotransfected T cells.
S7 902-1065 Sentence denotes A 21.4-kb DNA clone, pZVB70, showed the highest transactivating ability, while two other DNA fragments, pZVB10 (6.2 kb) and pZVH14 (8.7 kb), showed lower activity.
S8 1066-1177 Sentence denotes One of these clones, pZVH14, activated the HIV promoter construct containing a mutation in the NF kappa B site.
S9 1178-1316 Sentence denotes However, this mutated NF kappa B promoter was not transactivated during HHV-6(GS) infection or after cotransfection with pZVB70 or pZVB10.
S10 1317-1448 Sentence denotes These data indicate that the NF kappa B sites of the HIV promoter are essential for its transactivation during HHV-6(GS) infection.
S11 1449-1636 Sentence denotes By increasing HIV promoter activity in primary T lymphocytes, HHV-6 may consequently increase HIV replication, leading to an increase in the cytopathic effect on coinfected human T cells.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 19-60 NP denotes the human immunodeficiency virus promoter
C2 64-91 NP denotes human herpesvirus 6 (HHV-6)
C3 100-102 NP denotes GS
C4 107-111 NP denotes Z-29
C5 115-142 NP denotes primary human T lymphocytes
C6 181-190 NP denotes HHV-6(GS)
C7 207-234 NP denotes Human herpesvirus 6 (HHV-6)
C8 248-295 NP denotes the human immunodeficiency virus (HIV) promoter
C9 346-359 NP denotes human T cells
C10 396-412 NP denotes the HIV promoter
C11 426-431 NP denotes HHV-6
C12 481-508 NP denotes primary human T lymphocytes
C13 573-578 NP denotes HHV-6
C14 580-582 NP denotes GS
C15 587-590 NP denotes Z29
C16 607-623 NP denotes the HIV promoter
C17 625-638 NP denotes The GS strain
C18 654-666 NP denotes the promoter
C19 713-727 NP denotes the Z29 strain
C21 738-750 NP denotes HIV promoter
C20 738-759 NP denotes HIV promoter activity
C22 816-825 NP denotes HHV-6(GS)
C23 859-875 NP denotes the HIV promoter
C24 902-921 NP denotes A 21.4-kb DNA clone
C25 923-929 NP denotes pZVB70
C26 991-1004 NP denotes DNA fragments
C28 1006-1021 NP denotes pZVB10 (6.2 kb)
C27 1006-1041 NP denotes pZVB10 (6.2 kb) and pZVH14 (8.7 kb)
C29 1105-1121 NP denotes the HIV promoter
C30 1157-1176 NP denotes the NF kappa B site
C31 1250-1259 NP denotes HHV-6(GS)
C32 1299-1305 NP denotes pZVB70
C33 1309-1315 NP denotes pZVB10
C34 1342-1362 NP denotes the NF kappa B sites
C35 1366-1382 NP denotes the HIV promoter
C36 1401-1404 NP denotes its
C37 1428-1437 NP denotes HHV-6(GS)
C39 1463-1475 NP denotes HIV promoter
C38 1463-1484 NP denotes HIV promoter activity
C40 1488-1509 NP denotes primary T lymphocytes
C41 1511-1516 NP denotes HHV-6
R1 C6 C2 coref-other HHV-6(GS),human herpesvirus 6 (HHV-6)
R2 C7 C2 coref-ident Human herpesvirus 6 (HHV-6),human herpesvirus 6 (HHV-6)
R3 C8 C1 coref-ident the human immunodeficiency virus (HIV) promoter,the human immunodeficiency virus promoter
R4 C9 C5 coref-other human T cells,primary human T lymphocytes
R5 C10 C8 coref-ident the HIV promoter,the human immunodeficiency virus (HIV) promoter
R6 C11 C7 coref-ident HHV-6,Human herpesvirus 6 (HHV-6)
R7 C12 C5 coref-ident primary human T lymphocytes,primary human T lymphocytes
R8 C13 C11 coref-ident HHV-6,HHV-6
R9 C14 C3 coref-ident GS,GS
R10 C15 C4 coref-ident Z29,Z-29
R11 C16 C10 coref-ident the HIV promoter,the HIV promoter
R12 C17 C14 coref-other The GS strain,GS
R13 C18 C16 coref-ident the promoter,the HIV promoter
R14 C19 C15 coref-other the Z29 strain,Z29
R15 C21 C18 coref-ident HIV promoter,the promoter
R16 C22 C6 coref-ident HHV-6(GS),HHV-6(GS)
R17 C23 C21 coref-ident the HIV promoter,HIV promoter
R18 C24 C25 coref-appos A 21.4-kb DNA clone,pZVB70
R19 C26 C27 coref-appos DNA fragments,pZVB10 (6.2 kb) and pZVH14 (8.7 kb)
R20 C29 C23 coref-ident the HIV promoter,the HIV promoter
R21 C31 C22 coref-ident HHV-6(GS),HHV-6(GS)
R22 C32 C25 coref-ident pZVB70,pZVB70
R23 C33 C28 coref-ident pZVB10,pZVB10 (6.2 kb)
R24 C34 C30 coref-ident the NF kappa B sites,the NF kappa B site
R25 C35 C29 coref-ident the HIV promoter,the HIV promoter
R26 C36 C35 coref-pron its,the HIV promoter
R27 C37 C31 coref-ident HHV-6(GS),HHV-6(GS)
R28 C39 C35 coref-ident HIV promoter,the HIV promoter
R29 C38 C20 coref-ident HIV promoter activity,HIV promoter activity
R30 C40 C12 coref-ident primary T lymphocytes,primary human T lymphocytes
R31 C41 C13 coref-ident HHV-6,HHV-6

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 23-51 virus denotes human immunodeficiency virus
T2 64-83 virus denotes human herpesvirus 6
T3 85-90 virus denotes HHV-6
T4 115-130 cell_type denotes primary human T
T5 131-142 cell_type denotes lymphocytes
T6 165-186 virus denotes transactivating HHV-6
T7 207-226 virus denotes Human herpesvirus 6
T8 228-233 virus denotes HHV-6
T9 252-280 virus denotes human immunodeficiency virus
T10 333-359 cell_type denotes HIV-infected human T cells
T11 400-412 DNA_domain_or_region denotes HIV promoter
T12 426-431 virus denotes HHV-6
T13 481-508 cell_type denotes primary human T lymphocytes
T14 525-546 other_name denotes antigenic stimulation
T15 573-578 virus denotes HHV-6
T16 580-582 virus denotes GS
T17 587-590 virus denotes Z29
T18 611-623 DNA_domain_or_region denotes HIV promoter
T19 629-638 virus denotes GS strain
T20 658-666 DNA_domain_or_region denotes promoter
T21 698-705 cell_type denotes T cells
T22 717-727 virus denotes Z29 strain
T23 738-750 DNA_domain_or_region denotes HIV promoter
T24 768-786 cell_type denotes stimulated T cells
T25 816-843 DNA_molecule denotes HHV-6(GS) genomic fragments
T26 863-875 DNA_domain_or_region denotes HIV promoter
T27 879-900 cell_line denotes cotransfected T cells
T28 904-921 DNA_molecule denotes 21.4-kb DNA clone
T29 923-929 DNA_molecule denotes pZVB70
T30 950-973 other_name denotes transactivating ability
T31 991-1004 DNA_molecule denotes DNA fragments
T32 1006-1012 DNA_molecule denotes pZVB10
T33 1026-1032 DNA_molecule denotes pZVH14
T34 1087-1093 DNA_molecule denotes pZVH14
T35 1109-1121 DNA_domain_or_region denotes HIV promoter
T36 1161-1176 DNA_molecule denotes NF kappa B site
T37 1192-1219 DNA_domain_or_region denotes mutated NF kappa B promoter
T38 1250-1259 virus denotes HHV-6(GS)
T39 1299-1305 DNA_molecule denotes pZVB70
T40 1309-1315 DNA_molecule denotes pZVB10
T41 1346-1362 DNA_domain_or_region denotes NF kappa B sites
T42 1370-1382 DNA_domain_or_region denotes HIV promoter
T43 1405-1420 other_name denotes transactivation
T44 1428-1437 virus denotes HHV-6(GS)
T45 1463-1475 DNA_domain_or_region denotes HIV promoter
T46 1488-1509 cell_type denotes primary T lymphocytes
T47 1511-1516 virus denotes HHV-6
T48 1543-1558 other_name denotes HIV replication
T49 1611-1635 cell_type denotes coinfected human T cells